Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Nkx3-1P97436 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Nkx3-1P97436 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Nkx3-1P97436 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Nkx3-1P97436 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Nkx3-1P97436 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Gm16401-202ENSMUST00000197463 2074 ntBASIC13.76□□□□□ -0.21
Nkx3-1P97436 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Gm14494-201ENSMUST00000118786 435 ntBASIC13.76□□□□□ -0.21
Nkx3-1P97436 Gm9727-201ENSMUST00000161387 555 ntBASIC13.76□□□□□ -0.21
Nkx3-1P97436 Gm6736-201ENSMUST00000166583 948 ntBASIC13.76□□□□□ -0.21
Nkx3-1P97436 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Nkx3-1P97436 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Nkx3-1P97436 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC13.75□□□□□ -0.21
Nkx3-1P97436 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC13.75□□□□□ -0.21
Nkx3-1P97436 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Nkx3-1P97436 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Nkx3-1P97436 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gm4609-201ENSMUST00000106443 1002 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gm5138-201ENSMUST00000113842 1002 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gm15191-201ENSMUST00000117933 1000 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gm12182-201ENSMUST00000118655 1008 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gm13882-201ENSMUST00000120886 1002 ntBASIC13.74□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 10.8 ms