Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdx1P18111 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Cdx1P18111 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC12.94□□□□□ -0.34
Cdx1P18111 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdx1P18111 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdx1P18111 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdx1P18111 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdx1P18111 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdx1P18111 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdx1P18111 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdx1P18111 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Cdx1P18111 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cdx1P18111 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdx1P18111 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Cdx1P18111 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdx1P18111 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC12.93□□□□□ -0.34
Cdx1P18111 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
Cdx1P18111 Gm12382-201ENSMUST00000122005 922 ntBASIC12.93□□□□□ -0.34
Cdx1P18111 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC12.93□□□□□ -0.34
Cdx1P18111 Gm37292-201ENSMUST00000192062 758 ntBASIC12.93□□□□□ -0.34
Cdx1P18111 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdx1P18111 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Cdx1P18111 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdx1P18111 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdx1P18111 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC12.93□□□□□ -0.34
Cdx1P18111 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdx1P18111 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Cdx1P18111 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Cdx1P18111 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdx1P18111 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdx1P18111 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Cdx1P18111 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdx1P18111 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Cdx1P18111 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cdx1P18111 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Cdx1P18111 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdx1P18111 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdx1P18111 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Cdx1P18111 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdx1P18111 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdx1P18111 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
Cdx1P18111 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdx1P18111 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdx1P18111 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Cdx1P18111 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdx1P18111 Gm8668-201ENSMUST00000120559 1447 ntBASIC12.92□□□□□ -0.34
Cdx1P18111 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC12.92□□□□□ -0.34
Cdx1P18111 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC12.92□□□□□ -0.34
Cdx1P18111 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Cdx1P18111 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC12.92□□□□□ -0.34
Cdx1P18111 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC12.92□□□□□ -0.34
Cdx1P18111 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdx1P18111 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
Cdx1P18111 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Cdx1P18111 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC12.92□□□□□ -0.34
Cdx1P18111 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC12.92□□□□□ -0.34
Cdx1P18111 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdx1P18111 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdx1P18111 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Cdx1P18111 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Cdx1P18111 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC12.91□□□□□ -0.34
Cdx1P18111 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC12.91□□□□□ -0.34
Cdx1P18111 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC12.91□□□□□ -0.34
Cdx1P18111 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC12.91□□□□□ -0.34
Cdx1P18111 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Gm11960-202ENSMUST00000181063 2858 ntBASIC12.91□□□□□ -0.34
Cdx1P18111 Gm7712-202ENSMUST00000222331 1510 ntBASIC12.91□□□□□ -0.34
Cdx1P18111 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC12.91□□□□□ -0.34
Cdx1P18111 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC12.91□□□□□ -0.34
Cdx1P18111 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC12.91□□□□□ -0.34
Cdx1P18111 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC12.91□□□□□ -0.34
Cdx1P18111 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cdx1P18111 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Cdx1P18111 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Cdx1P18111 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC12.9□□□□□ -0.34
Cdx1P18111 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Cdx1P18111 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms