Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Nr1i3O35627 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Nr1i3O35627 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Nr1i3O35627 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Nr1i3O35627 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Nr1i3O35627 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
Nr1i3O35627 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Nr1i3O35627 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Nr1i3O35627 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Nr1i3O35627 Zkscan3-208ENSMUST00000224820 5398 ntBASIC17.17■□□□□ 0.34
Nr1i3O35627 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Nr1i3O35627 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Nr1i3O35627 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Nr1i3O35627 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC17.17■□□□□ 0.34
Nr1i3O35627 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Nr1i3O35627 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Nr1i3O35627 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Nr1i3O35627 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
Nr1i3O35627 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Nr1i3O35627 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Nr1i3O35627 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Nr1i3O35627 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Nr1i3O35627 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nr1i3O35627 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Nr1i3O35627 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nr1i3O35627 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Nr1i3O35627 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
Nr1i3O35627 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Nr1i3O35627 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Nr1i3O35627 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nr1i3O35627 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Nr1i3O35627 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC17.16■□□□□ 0.34
Nr1i3O35627 Gm6257-201ENSMUST00000163864 910 ntBASIC17.16■□□□□ 0.34
Nr1i3O35627 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nr1i3O35627 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC17.16■□□□□ 0.34
Nr1i3O35627 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Nr1i3O35627 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Nr1i3O35627 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nr1i3O35627 Gm9987-201ENSMUST00000069768 567 ntBASIC17.16■□□□□ 0.34
Nr1i3O35627 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nr1i3O35627 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nr1i3O35627 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nr1i3O35627 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nr1i3O35627 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nr1i3O35627 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Nr1i3O35627 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
Nr1i3O35627 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC17.15■□□□□ 0.34
Nr1i3O35627 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
Nr1i3O35627 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1i3O35627 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Nr1i3O35627 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Nr1i3O35627 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nr1i3O35627 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC17.14■□□□□ 0.33
Nr1i3O35627 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nr1i3O35627 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Nr1i3O35627 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC17.14■□□□□ 0.33
Nr1i3O35627 Gm5587-201ENSMUST00000206270 674 ntBASIC17.14■□□□□ 0.33
Nr1i3O35627 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Nr1i3O35627 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nr1i3O35627 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Nr1i3O35627 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Nr1i3O35627 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Nr1i3O35627 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nr1i3O35627 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nr1i3O35627 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Nr1i3O35627 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1i3O35627 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1i3O35627 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1i3O35627 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC17.13■□□□□ 0.33
Nr1i3O35627 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC17.13■□□□□ 0.33
Nr1i3O35627 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1i3O35627 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1i3O35627 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1i3O35627 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1i3O35627 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1i3O35627 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1i3O35627 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1i3O35627 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms