Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Trav16d-dv11A0A075B617 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav16d-dv11A0A075B617 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav16d-dv11A0A075B617 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC11.79□□□□□ -0.52
Trav16d-dv11A0A075B617 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav16d-dv11A0A075B617 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav16d-dv11A0A075B617 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav16d-dv11A0A075B617 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav16d-dv11A0A075B617 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Trav16d-dv11A0A075B617 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC11.79□□□□□ -0.52
Trav16d-dv11A0A075B617 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC11.78□□□□□ -0.52
Trav16d-dv11A0A075B617 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav16d-dv11A0A075B617 Gm10584-201ENSMUST00000207036 2628 ntBASIC11.78□□□□□ -0.52
Trav16d-dv11A0A075B617 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Trav16d-dv11A0A075B617 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav16d-dv11A0A075B617 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav16d-dv11A0A075B617 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Trav16d-dv11A0A075B617 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC11.78□□□□□ -0.52
Trav16d-dv11A0A075B617 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trav16d-dv11A0A075B617 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Trav16d-dv11A0A075B617 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav16d-dv11A0A075B617 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav16d-dv11A0A075B617 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav16d-dv11A0A075B617 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav16d-dv11A0A075B617 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC11.78□□□□□ -0.52
Trav16d-dv11A0A075B617 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav16d-dv11A0A075B617 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav16d-dv11A0A075B617 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Trav16d-dv11A0A075B617 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav16d-dv11A0A075B617 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Trav16d-dv11A0A075B617 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
Trav16d-dv11A0A075B617 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trav16d-dv11A0A075B617 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trav16d-dv11A0A075B617 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Trav16d-dv11A0A075B617 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trav16d-dv11A0A075B617 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC11.77□□□□□ -0.52
Trav16d-dv11A0A075B617 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Trav16d-dv11A0A075B617 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC11.77□□□□□ -0.52
Trav16d-dv11A0A075B617 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Trav16d-dv11A0A075B617 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
Trav16d-dv11A0A075B617 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trav16d-dv11A0A075B617 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trav16d-dv11A0A075B617 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Trav16d-dv11A0A075B617 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Gm12382-201ENSMUST00000122005 922 ntBASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Gm18025-201ENSMUST00000221733 862 ntBASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav16d-dv11A0A075B617 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Gm38058-201ENSMUST00000194323 4368 ntBASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav16d-dv11A0A075B617 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC11.75□□□□□ -0.53
Trav16d-dv11A0A075B617 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Trav16d-dv11A0A075B617 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav16d-dv11A0A075B617 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav16d-dv11A0A075B617 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav16d-dv11A0A075B617 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav16d-dv11A0A075B617 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav16d-dv11A0A075B617 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 59.9 ms