Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 BX248123.2-201ENST00000606318 124 ntBASIC1.51□□□□□ -2.17
PCDHB3Q9Y5E6 MIR8070-201ENST00000616510 88 ntBASIC1.5□□□□□ -2.17
PCDHB3Q9Y5E6 MIR20A-201ENST00000362279 71 ntBASIC1.49□□□□□ -2.17
PCDHB3Q9Y5E6 SNORD114-24-201ENST00000365029 72 ntBASIC1.49□□□□□ -2.17
PCDHB3Q9Y5E6 Y_RNA.327-201ENST00000365201 102 ntBASIC1.49□□□□□ -2.17
PCDHB3Q9Y5E6 RNU6-246P-201ENST00000384702 107 ntBASIC1.49□□□□□ -2.17
PCDHB3Q9Y5E6 MIR548AG1-201ENST00000579932 66 ntBASIC1.49□□□□□ -2.17
PCDHB3Q9Y5E6 RNU6-810P-201ENST00000364001 107 ntBASIC1.48□□□□□ -2.17
PCDHB3Q9Y5E6 MIR320A-201ENST00000385302 82 ntBASIC1.48□□□□□ -2.17
PCDHB3Q9Y5E6 SNORA31.24-201ENST00000517232 57 ntBASIC1.48□□□□□ -2.17
PCDHB3Q9Y5E6 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
PCDHB3Q9Y5E6 SNORD1B-201ENST00000363091 84 ntBASIC1.47□□□□□ -2.17
PCDHB3Q9Y5E6 MIR548F3-201ENST00000408509 87 ntBASIC1.47□□□□□ -2.17
PCDHB3Q9Y5E6 RNU6-955P-201ENST00000410497 104 ntBASIC1.47□□□□□ -2.17
PCDHB3Q9Y5E6 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.47□□□□□ -2.17
PCDHB3Q9Y5E6 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.47□□□□□ -2.17
PCDHB3Q9Y5E6 RNU1-29P-201ENST00000606574 126 ntBASIC1.47□□□□□ -2.17
PCDHB3Q9Y5E6 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
PCDHB3Q9Y5E6 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.47□□□□□ -2.17
PCDHB3Q9Y5E6 MIR26B-201ENST00000362251 77 ntBASIC1.46□□□□□ -2.18
PCDHB3Q9Y5E6 RNU6-337P-201ENST00000391243 106 ntBASIC1.46□□□□□ -2.18
PCDHB3Q9Y5E6 RNU6-172P-201ENST00000411000 93 ntBASIC1.46□□□□□ -2.18
PCDHB3Q9Y5E6 MIR618-201ENST00000385287 98 ntBASIC1.45□□□□□ -2.18
PCDHB3Q9Y5E6 RNU1-124P-201ENST00000363861 145 ntBASIC1.44□□□□□ -2.18
PCDHB3Q9Y5E6 RNU7-154P-201ENST00000516194 62 ntBASIC1.44□□□□□ -2.18
PCDHB3Q9Y5E6 RNA5SP404-201ENST00000517118 132 ntBASIC1.44□□□□□ -2.18
PCDHB3Q9Y5E6 MIR5706-201ENST00000579841 80 ntBASIC1.44□□□□□ -2.18
PCDHB3Q9Y5E6 MIR1304-201ENST00000408243 91 ntBASIC1.43□□□□□ -2.18
PCDHB3Q9Y5E6 MIR4421-201ENST00000578133 69 ntBASIC1.43□□□□□ -2.18
PCDHB3Q9Y5E6 MIR6773-201ENST00000612812 74 ntBASIC1.43□□□□□ -2.18
PCDHB3Q9Y5E6 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
PCDHB3Q9Y5E6 SNORD115-25-201ENST00000362619 82 ntBASIC1.42□□□□□ -2.18
PCDHB3Q9Y5E6 Y_RNA.109-201ENST00000363215 102 ntBASIC1.42□□□□□ -2.18
PCDHB3Q9Y5E6 MIR1323-201ENST00000408090 73 ntBASIC1.42□□□□□ -2.18
PCDHB3Q9Y5E6 SNORD2-201ENST00000459163 69 ntBASIC1.42□□□□□ -2.18
PCDHB3Q9Y5E6 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.42□□□□□ -2.18
PCDHB3Q9Y5E6 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.42□□□□□ -2.18
PCDHB3Q9Y5E6 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
PCDHB3Q9Y5E6 RNU6-392P-201ENST00000364926 101 ntBASIC1.41□□□□□ -2.18
PCDHB3Q9Y5E6 SNORA49-201ENST00000386157 136 ntBASIC1.41□□□□□ -2.18
PCDHB3Q9Y5E6 RNA5SP222-201ENST00000411039 105 ntBASIC1.41□□□□□ -2.18
PCDHB3Q9Y5E6 Y_RNA.118-201ENST00000363300 101 ntBASIC1.4□□□□□ -2.19
PCDHB3Q9Y5E6 AL353770.2-201ENST00000620024 78 ntBASIC1.4□□□□□ -2.19
PCDHB3Q9Y5E6 AL354695.1-201ENST00000427935 228 ntBASIC1.39□□□□□ -2.19
PCDHB3Q9Y5E6 RNA5SP61-201ENST00000516453 100 ntBASIC1.39□□□□□ -2.19
PCDHB3Q9Y5E6 MIR4490-201ENST00000582647 84 ntBASIC1.39□□□□□ -2.19
PCDHB3Q9Y5E6 MIR7974-201ENST00000615835 79 ntBASIC1.39□□□□□ -2.19
PCDHB3Q9Y5E6 Y_RNA.224-201ENST00000364308 111 ntBASIC1.38□□□□□ -2.19
PCDHB3Q9Y5E6 SNORD114-29-201ENST00000364819 70 ntBASIC1.38□□□□□ -2.19
PCDHB3Q9Y5E6 AC069271.1-201ENST00000445577 156 ntBASIC1.38□□□□□ -2.19
PCDHB3Q9Y5E6 MIR6078-201ENST00000611069 100 ntBASIC1.38□□□□□ -2.19
PCDHB3Q9Y5E6 MIR429-201ENST00000362106 83 ntBASIC1.37□□□□□ -2.19
PCDHB3Q9Y5E6 RNU6-838P-201ENST00000363399 108 ntBASIC1.37□□□□□ -2.19
PCDHB3Q9Y5E6 Y_RNA.355-201ENST00000365462 98 ntBASIC1.37□□□□□ -2.19
PCDHB3Q9Y5E6 RNA5SP470-201ENST00000516463 106 ntBASIC1.37□□□□□ -2.19
PCDHB3Q9Y5E6 MIR6504-201ENST00000613520 61 ntBASIC1.37□□□□□ -2.19
PCDHB3Q9Y5E6 MIR7111-201ENST00000619751 72 ntBASIC1.37□□□□□ -2.19
PCDHB3Q9Y5E6 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC1.36□□□□□ -2.19
PCDHB3Q9Y5E6 RNY1P8-201ENST00000383970 114 ntBASIC1.36□□□□□ -2.19
PCDHB3Q9Y5E6 RNU6-458P-201ENST00000384179 107 ntBASIC1.36□□□□□ -2.19
PCDHB3Q9Y5E6 RNU6-939P-201ENST00000384634 107 ntBASIC1.36□□□□□ -2.19
PCDHB3Q9Y5E6 MIR150-201ENST00000385048 84 ntBASIC1.36□□□□□ -2.19
PCDHB3Q9Y5E6 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.36□□□□□ -2.19
PCDHB3Q9Y5E6 RNU7-188P-201ENST00000517063 64 ntBASIC1.36□□□□□ -2.19
PCDHB3Q9Y5E6 U6.58-201ENST00000613107 107 ntBASIC1.36□□□□□ -2.19
PCDHB3Q9Y5E6 RNA5SP517-201ENST00000364724 117 ntBASIC1.35□□□□□ -2.19
PCDHB3Q9Y5E6 MIRLET7B-201ENST00000385140 83 ntBASIC1.35□□□□□ -2.19
PCDHB3Q9Y5E6 RNU6-419P-201ENST00000517030 63 ntBASIC1.35□□□□□ -2.19
PCDHB3Q9Y5E6 MIR545-201ENST00000385085 106 ntBASIC1.34□□□□□ -2.19
PCDHB3Q9Y5E6 RNU6-175P-201ENST00000516896 107 ntBASIC1.34□□□□□ -2.19
PCDHB3Q9Y5E6 AL353765.1-201ENST00000605514 183 ntBASIC1.34□□□□□ -2.19
PCDHB3Q9Y5E6 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC1.33□□□□□ -2.2
PCDHB3Q9Y5E6 MIR1276-201ENST00000408707 83 ntBASIC1.33□□□□□ -2.2
PCDHB3Q9Y5E6 snoU13.18-201ENST00000459483 104 ntBASIC1.33□□□□□ -2.2
PCDHB3Q9Y5E6 SNORA25.18-201ENST00000607153 114 ntBASIC1.33□□□□□ -2.2
PCDHB3Q9Y5E6 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.32□□□□□ -2.2
PCDHB3Q9Y5E6 U7.6-201ENST00000610841 64 ntBASIC1.31□□□□□ -2.2
PCDHB3Q9Y5E6 RNU6-502P-201ENST00000362419 108 ntBASIC1.3□□□□□ -2.2
PCDHB3Q9Y5E6 SNORA2A-201ENST00000383885 135 ntBASIC1.3□□□□□ -2.2
PCDHB3Q9Y5E6 SNORA36.2-201ENST00000384004 127 ntBASIC1.3□□□□□ -2.2
PCDHB3Q9Y5E6 ACA64.5-201ENST00000516207 127 ntBASIC1.3□□□□□ -2.2
PCDHB3Q9Y5E6 MIR4452-201ENST00000583004 71 ntBASIC1.3□□□□□ -2.2
PCDHB3Q9Y5E6 RNU6-782P-201ENST00000516852 104 ntBASIC1.29□□□□□ -2.2
PCDHB3Q9Y5E6 AC068338.1-201ENST00000565567 176 ntBASIC1.29□□□□□ -2.2
PCDHB3Q9Y5E6 MIR579-201ENST00000385221 98 ntBASIC1.28□□□□□ -2.2
PCDHB3Q9Y5E6 RNA5SP220-201ENST00000516298 104 ntBASIC1.28□□□□□ -2.2
PCDHB3Q9Y5E6 RNU6-1232P-201ENST00000516299 86 ntBASIC1.28□□□□□ -2.2
PCDHB3Q9Y5E6 RNU6-229P-201ENST00000516614 102 ntBASIC1.28□□□□□ -2.2
PCDHB3Q9Y5E6 RNA5SP102-201ENST00000516865 106 ntBASIC1.28□□□□□ -2.2
PCDHB3Q9Y5E6 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC1.28□□□□□ -2.2
PCDHB3Q9Y5E6 RNU6-247P-201ENST00000362636 107 ntBASIC1.27□□□□□ -2.21
PCDHB3Q9Y5E6 SNORD118-201ENST00000363593 134 ntBASIC1.27□□□□□ -2.21
PCDHB3Q9Y5E6 RNU6-1036P-201ENST00000383959 104 ntBASIC1.27□□□□□ -2.21
PCDHB3Q9Y5E6 RNU6-42P-201ENST00000384165 107 ntBASIC1.27□□□□□ -2.21
PCDHB3Q9Y5E6 MIR140-201ENST00000385282 100 ntBASIC1.27□□□□□ -2.21
PCDHB3Q9Y5E6 MIR3660-201ENST00000584845 100 ntBASIC1.27□□□□□ -2.21
PCDHB3Q9Y5E6 RNU6-924P-201ENST00000362926 108 ntBASIC1.26□□□□□ -2.21
PCDHB3Q9Y5E6 RNU6-598P-201ENST00000364017 105 ntBASIC1.26□□□□□ -2.21
PCDHB3Q9Y5E6 MIR4677-201ENST00000584153 80 ntBASIC1.26□□□□□ -2.21
PCDHB3Q9Y5E6 Y_RNA.423-201ENST00000384057 113 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms