Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RNU2-51P-201ENST00000410708 197 ntBASIC-0.74□□□□□ -2.53
CPSF3Q9UKF6 RPS29P8-201ENST00000445109 171 ntBASIC-0.74□□□□□ -2.53
CPSF3Q9UKF6 AC021146.9-201ENST00000512503 156 ntBASIC-0.74□□□□□ -2.53
CPSF3Q9UKF6 MIR6851-201ENST00000617060 67 ntBASIC-0.74□□□□□ -2.53
CPSF3Q9UKF6 AL391099.1-201ENST00000624635 187 ntBASIC-0.74□□□□□ -2.53
CPSF3Q9UKF6 RNA5SP368-201ENST00000364298 116 ntBASIC-0.75□□□□□ -2.53
CPSF3Q9UKF6 RNU6-337P-201ENST00000391243 106 ntBASIC-0.75□□□□□ -2.53
CPSF3Q9UKF6 MIR1236-201ENST00000408340 102 ntBASIC-0.75□□□□□ -2.53
CPSF3Q9UKF6 SNORD38.3-201ENST00000516599 73 ntBASIC-0.75□□□□□ -2.53
CPSF3Q9UKF6 RNU6-158P-201ENST00000517104 100 ntBASIC-0.75□□□□□ -2.53
CPSF3Q9UKF6 MIR4773-1-201ENST00000637203 78 ntBASIC-0.75□□□□□ -2.53
CPSF3Q9UKF6 Y_RNA.273-201ENST00000364703 102 ntBASIC-0.76□□□□□ -2.53
CPSF3Q9UKF6 Y_RNA.290-201ENST00000364879 114 ntBASIC-0.76□□□□□ -2.53
CPSF3Q9UKF6 MTATP8P2-201ENST00000435212 202 ntBASIC-0.76□□□□□ -2.53
CPSF3Q9UKF6 AC108676.2-201ENST00000605225 163 ntBASIC-0.76□□□□□ -2.53
CPSF3Q9UKF6 MIRLET7B-201ENST00000385140 83 ntBASIC-0.77□□□□□ -2.53
CPSF3Q9UKF6 SNORD75.1-201ENST00000408373 60 ntBASIC-0.77□□□□□ -2.53
CPSF3Q9UKF6 AL031737.1-201ENST00000450125 223 ntBASIC-0.77□□□□□ -2.53
CPSF3Q9UKF6 RNU7-153P-201ENST00000516455 62 ntBASIC-0.77□□□□□ -2.53
CPSF3Q9UKF6 MIR5704-201ENST00000584029 77 ntBASIC-0.77□□□□□ -2.53
CPSF3Q9UKF6 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.77□□□□□ -2.53
CPSF3Q9UKF6 MIR450A1-201ENST00000362262 91 ntBASIC-0.78□□□□□ -2.53
CPSF3Q9UKF6 RNY4P18-201ENST00000391107 89 ntBASIC-0.78□□□□□ -2.53
CPSF3Q9UKF6 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.78□□□□□ -2.53
CPSF3Q9UKF6 SNORD115-27-201ENST00000364430 82 ntBASIC-0.79□□□□□ -2.54
CPSF3Q9UKF6 RNU6-1039P-201ENST00000383931 107 ntBASIC-0.79□□□□□ -2.54
CPSF3Q9UKF6 U6.81-201ENST00000612550 106 ntBASIC-0.79□□□□□ -2.54
CPSF3Q9UKF6 RNU6-260P-201ENST00000384092 107 ntBASIC-0.8□□□□□ -2.54
CPSF3Q9UKF6 MIR204-201ENST00000385200 110 ntBASIC-0.8□□□□□ -2.54
CPSF3Q9UKF6 RNU6-592P-201ENST00000411333 103 ntBASIC-0.8□□□□□ -2.54
CPSF3Q9UKF6 SNORD114-14-201ENST00000362723 75 ntBASIC-0.81□□□□□ -2.54
CPSF3Q9UKF6 SNORD115-23-201ENST00000364461 82 ntBASIC-0.81□□□□□ -2.54
CPSF3Q9UKF6 MIR203A-201ENST00000384836 110 ntBASIC-0.81□□□□□ -2.54
CPSF3Q9UKF6 SNORA3B-201ENST00000391305 131 ntBASIC-0.81□□□□□ -2.54
CPSF3Q9UKF6 AL603908.1-201ENST00000406098 201 ntBASIC-0.81□□□□□ -2.54
CPSF3Q9UKF6 RNA5SP25-201ENST00000410815 110 ntBASIC-0.81□□□□□ -2.54
CPSF3Q9UKF6 MIR6509-201ENST00000614603 85 ntBASIC-0.81□□□□□ -2.54
CPSF3Q9UKF6 RNU6-1325P-201ENST00000364905 105 ntBASIC-0.82□□□□□ -2.54
CPSF3Q9UKF6 DLEU2_3.2-201ENST00000612883 73 ntBASIC-0.82□□□□□ -2.54
CPSF3Q9UKF6 snoR1.1-201ENST00000628177 80 ntBASIC-0.82□□□□□ -2.54
CPSF3Q9UKF6 U6.96-201ENST00000636425 70 ntBASIC-0.82□□□□□ -2.54
CPSF3Q9UKF6 RNU6-274P-201ENST00000459566 107 ntBASIC-0.83□□□□□ -2.54
CPSF3Q9UKF6 RNA5SP147-201ENST00000516493 109 ntBASIC-0.83□□□□□ -2.54
CPSF3Q9UKF6 MIR3657-201ENST00000584818 117 ntBASIC-0.83□□□□□ -2.54
CPSF3Q9UKF6 MIR6854-201ENST00000614935 69 ntBASIC-0.83□□□□□ -2.54
CPSF3Q9UKF6 MIR8068-201ENST00000618032 68 ntBASIC-0.83□□□□□ -2.54
CPSF3Q9UKF6 AC090617.8-201ENST00000623339 167 ntBASIC-0.83□□□□□ -2.54
CPSF3Q9UKF6 MIR2052-201ENST00000636055 55 ntBASIC-0.83□□□□□ -2.54
CPSF3Q9UKF6 MIR4436A-201ENST00000585278 85 ntBASIC-0.84□□□□□ -2.54
CPSF3Q9UKF6 MIR6086-201ENST00000638065 55 ntBASIC-0.84□□□□□ -2.54
CPSF3Q9UKF6 SNORA2.1-201ENST00000363089 137 ntBASIC-0.85□□□□□ -2.55
CPSF3Q9UKF6 MIR519C-201ENST00000385053 87 ntBASIC-0.85□□□□□ -2.55
CPSF3Q9UKF6 AL606753.1-201ENST00000427435 87 ntBASIC-0.85□□□□□ -2.55
CPSF3Q9UKF6 AL691482.2-201ENST00000457453 84 ntBASIC-0.85□□□□□ -2.55
CPSF3Q9UKF6 SNORD95.1-201ENST00000364099 68 ntBASIC-0.86□□□□□ -2.55
CPSF3Q9UKF6 SNORD114-15-201ENST00000364687 72 ntBASIC-0.86□□□□□ -2.55
CPSF3Q9UKF6 Y_RNA.606-201ENST00000410579 103 ntBASIC-0.86□□□□□ -2.55
CPSF3Q9UKF6 Y_RNA.629-201ENST00000411368 105 ntBASIC-0.86□□□□□ -2.55
CPSF3Q9UKF6 AP001318.4-201ENST00000616637 121 ntBASIC-0.86□□□□□ -2.55
CPSF3Q9UKF6 RNU6-755P-201ENST00000364400 103 ntBASIC-0.87□□□□□ -2.55
CPSF3Q9UKF6 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-0.87□□□□□ -2.55
CPSF3Q9UKF6 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.87□□□□□ -2.55
CPSF3Q9UKF6 AL450471.1-201ENST00000447509 127 ntBASIC-0.87□□□□□ -2.55
CPSF3Q9UKF6 SNORA13-201ENST00000458790 133 ntBASIC-0.87□□□□□ -2.55
CPSF3Q9UKF6 AC021146.6-201ENST00000514659 117 ntBASIC-0.87□□□□□ -2.55
CPSF3Q9UKF6 MIR4668-201ENST00000582284 70 ntBASIC-0.87□□□□□ -2.55
CPSF3Q9UKF6 MIR518B-201ENST00000385127 83 ntBASIC-0.88□□□□□ -2.55
CPSF3Q9UKF6 RNU4-63P-201ENST00000411313 118 ntBASIC-0.88□□□□□ -2.55
CPSF3Q9UKF6 snoU13.19-201ENST00000459148 104 ntBASIC-0.88□□□□□ -2.55
CPSF3Q9UKF6 YWHAEP3-201ENST00000582767 121 ntBASIC-0.88□□□□□ -2.55
CPSF3Q9UKF6 RNU6-208P-201ENST00000362431 107 ntBASIC-0.89□□□□□ -2.55
CPSF3Q9UKF6 RNU6-633P-201ENST00000362612 103 ntBASIC-0.89□□□□□ -2.55
CPSF3Q9UKF6 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.89□□□□□ -2.55
CPSF3Q9UKF6 SNORA33.1-201ENST00000364957 130 ntBASIC-0.89□□□□□ -2.55
CPSF3Q9UKF6 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.89□□□□□ -2.55
CPSF3Q9UKF6 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.89□□□□□ -2.55
CPSF3Q9UKF6 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.89□□□□□ -2.55
CPSF3Q9UKF6 SNORA40.13-201ENST00000516379 120 ntBASIC-0.89□□□□□ -2.55
CPSF3Q9UKF6 MIR3681-201ENST00000580089 72 ntBASIC-0.89□□□□□ -2.55
CPSF3Q9UKF6 MT-TQ-201ENST00000387372 72 ntBASIC-0.9□□□□□ -2.55
CPSF3Q9UKF6 SNORD22.1-201ENST00000516331 125 ntBASIC-0.9□□□□□ -2.55
CPSF3Q9UKF6 MIR3179-1-201ENST00000578940 84 ntBASIC-0.9□□□□□ -2.55
CPSF3Q9UKF6 MIR3179-2-201ENST00000579107 84 ntBASIC-0.9□□□□□ -2.55
CPSF3Q9UKF6 MIR3179-3-201ENST00000579566 84 ntBASIC-0.9□□□□□ -2.55
CPSF3Q9UKF6 MIR3179-4-201ENST00000617599 84 ntBASIC-0.9□□□□□ -2.55
CPSF3Q9UKF6 MALAT1.1-201ENST00000618249 95 ntBASIC-0.9□□□□□ -2.55
CPSF3Q9UKF6 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.91□□□□□ -2.56
CPSF3Q9UKF6 RNU6-721P-201ENST00000410155 105 ntBASIC-0.91□□□□□ -2.56
CPSF3Q9UKF6 RNU6-340P-201ENST00000364005 107 ntBASIC-0.92□□□□□ -2.56
CPSF3Q9UKF6 RNU6-905P-201ENST00000384434 107 ntBASIC-0.92□□□□□ -2.56
CPSF3Q9UKF6 SNORD77.2-201ENST00000391045 68 ntBASIC-0.92□□□□□ -2.56
CPSF3Q9UKF6 SNORA63.4-201ENST00000362763 126 ntBASIC-0.93□□□□□ -2.56
CPSF3Q9UKF6 RNU6-1290P-201ENST00000362957 109 ntBASIC-0.93□□□□□ -2.56
CPSF3Q9UKF6 Y_RNA.348-201ENST00000365403 103 ntBASIC-0.93□□□□□ -2.56
CPSF3Q9UKF6 Y_RNA.620-201ENST00000411009 88 ntBASIC-0.93□□□□□ -2.56
CPSF3Q9UKF6 RNU6-752P-201ENST00000516376 102 ntBASIC-0.93□□□□□ -2.56
CPSF3Q9UKF6 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.93□□□□□ -2.56
CPSF3Q9UKF6 SNORD115-37-201ENST00000363768 82 ntBASIC-0.94□□□□□ -2.56
CPSF3Q9UKF6 SNORD74.6-201ENST00000364796 70 ntBASIC-0.95□□□□□ -2.56
CPSF3Q9UKF6 RNU6-215P-201ENST00000365169 102 ntBASIC-0.95□□□□□ -2.56
Retrieved 100 of 98,524 protein–RNA pairs in 175.1 ms