Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
CLIP3Q96DZ5 HMGN2P22-201ENST00000427588 175 ntBASIC0.76□□□□□ -2.29
CLIP3Q96DZ5 RNU6-542P-201ENST00000516405 103 ntBASIC0.76□□□□□ -2.29
CLIP3Q96DZ5 MIR4473-201ENST00000583731 91 ntBASIC0.76□□□□□ -2.29
CLIP3Q96DZ5 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.76□□□□□ -2.29
CLIP3Q96DZ5 MIR6866-201ENST00000638146 69 ntBASIC0.76□□□□□ -2.29
CLIP3Q96DZ5 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.76□□□□□ -2.29
CLIP3Q96DZ5 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.75□□□□□ -2.29
CLIP3Q96DZ5 MIR521-2-201ENST00000384818 87 ntBASIC0.75□□□□□ -2.29
CLIP3Q96DZ5 MIR548E-201ENST00000408287 88 ntBASIC0.75□□□□□ -2.29
CLIP3Q96DZ5 AL157398.1-201ENST00000452981 186 ntBASIC0.75□□□□□ -2.29
CLIP3Q96DZ5 RNU6-1089P-201ENST00000516473 104 ntBASIC0.75□□□□□ -2.29
CLIP3Q96DZ5 AC092634.7-201ENST00000621022 103 ntBASIC0.75□□□□□ -2.29
CLIP3Q96DZ5 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.74□□□□□ -2.29
CLIP3Q96DZ5 AC069271.1-201ENST00000445577 156 ntBASIC0.74□□□□□ -2.29
CLIP3Q96DZ5 MIR6835-201ENST00000621552 64 ntBASIC0.74□□□□□ -2.29
CLIP3Q96DZ5 SNORD118-201ENST00000363593 134 ntBASIC0.73□□□□□ -2.29
CLIP3Q96DZ5 AC021146.9-201ENST00000512503 156 ntBASIC0.73□□□□□ -2.29
CLIP3Q96DZ5 RNU6-351P-201ENST00000516097 100 ntBASIC0.73□□□□□ -2.29
CLIP3Q96DZ5 SNORA25.18-201ENST00000607153 114 ntBASIC0.73□□□□□ -2.29
CLIP3Q96DZ5 RNA5SP215-201ENST00000363440 122 ntBASIC0.72□□□□□ -2.29
CLIP3Q96DZ5 SNORA63.6-201ENST00000364921 119 ntBASIC0.72□□□□□ -2.29
CLIP3Q96DZ5 SNORA33.1-201ENST00000364957 130 ntBASIC0.72□□□□□ -2.29
CLIP3Q96DZ5 RNU6-1162P-201ENST00000384443 104 ntBASIC0.72□□□□□ -2.29
CLIP3Q96DZ5 RNA5SP299-201ENST00000391203 116 ntBASIC0.72□□□□□ -2.29
CLIP3Q96DZ5 SCARNA21.1-201ENST00000515996 128 ntBASIC0.72□□□□□ -2.29
CLIP3Q96DZ5 MIR5706-201ENST00000579841 80 ntBASIC0.72□□□□□ -2.29
CLIP3Q96DZ5 MIR4714-201ENST00000580728 77 ntBASIC0.72□□□□□ -2.29
CLIP3Q96DZ5 RNU6-499P-201ENST00000365615 107 ntBASIC0.71□□□□□ -2.3
CLIP3Q96DZ5 MIR598-201ENST00000384868 97 ntBASIC0.71□□□□□ -2.3
CLIP3Q96DZ5 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.71□□□□□ -2.3
CLIP3Q96DZ5 U2.7-201ENST00000619197 100 ntBASIC0.71□□□□□ -2.3
CLIP3Q96DZ5 RNU6-945P-201ENST00000383947 107 ntBASIC0.7□□□□□ -2.3
CLIP3Q96DZ5 SNORA15B-2-201ENST00000384058 135 ntBASIC0.7□□□□□ -2.3
CLIP3Q96DZ5 SNORA15B-1-201ENST00000384334 135 ntBASIC0.7□□□□□ -2.3
CLIP3Q96DZ5 MIR508-201ENST00000384857 115 ntBASIC0.7□□□□□ -2.3
CLIP3Q96DZ5 RNU4-54P-201ENST00000516428 129 ntBASIC0.7□□□□□ -2.3
CLIP3Q96DZ5 RNA5SP121-201ENST00000516537 101 ntBASIC0.7□□□□□ -2.3
CLIP3Q96DZ5 Y_RNA.125-201ENST00000363371 111 ntBASIC0.69□□□□□ -2.3
CLIP3Q96DZ5 SNORA25.5-201ENST00000363782 126 ntBASIC0.69□□□□□ -2.3
CLIP3Q96DZ5 RNU6-1232P-201ENST00000516299 86 ntBASIC0.69□□□□□ -2.3
CLIP3Q96DZ5 uc_338.10-201ENST00000621872 182 ntBASIC0.69□□□□□ -2.3
CLIP3Q96DZ5 RNA5SP192-201ENST00000364404 120 ntBASIC0.68□□□□□ -2.3
CLIP3Q96DZ5 RNU7-174P-201ENST00000516248 59 ntBASIC0.68□□□□□ -2.3
CLIP3Q96DZ5 MIR6755-201ENST00000619993 66 ntBASIC0.68□□□□□ -2.3
CLIP3Q96DZ5 MIR633-201ENST00000384821 98 ntBASIC0.67□□□□□ -2.3
CLIP3Q96DZ5 SNORA40.8-201ENST00000411034 126 ntBASIC0.67□□□□□ -2.3
CLIP3Q96DZ5 RNA5SP436-201ENST00000516020 115 ntBASIC0.67□□□□□ -2.3
CLIP3Q96DZ5 MIR518A1-201ENST00000385068 85 ntBASIC0.66□□□□□ -2.3
CLIP3Q96DZ5 AC090617.8-201ENST00000623339 167 ntBASIC0.66□□□□□ -2.3
CLIP3Q96DZ5 MIR516B1-201ENST00000385211 90 ntBASIC0.65□□□□□ -2.31
CLIP3Q96DZ5 AC079150.2-201ENST00000443733 78 ntBASIC0.65□□□□□ -2.31
CLIP3Q96DZ5 MIR548V-201ENST00000584165 80 ntBASIC0.65□□□□□ -2.31
CLIP3Q96DZ5 U4.4-201ENST00000620626 117 ntBASIC0.65□□□□□ -2.31
CLIP3Q96DZ5 PVT1_3.1-201ENST00000620853 95 ntBASIC0.65□□□□□ -2.31
CLIP3Q96DZ5 SNORA2A-201ENST00000383885 135 ntBASIC0.64□□□□□ -2.31
CLIP3Q96DZ5 MIR630-201ENST00000384957 97 ntBASIC0.64□□□□□ -2.31
CLIP3Q96DZ5 SNORA49-201ENST00000386157 136 ntBASIC0.64□□□□□ -2.31
CLIP3Q96DZ5 MIR501-201ENST00000390204 84 ntBASIC0.64□□□□□ -2.31
CLIP3Q96DZ5 SNORA75.1-201ENST00000391130 148 ntBASIC0.64□□□□□ -2.31
CLIP3Q96DZ5 AC244090.1-201ENST00000441884 93 ntBASIC0.64□□□□□ -2.31
CLIP3Q96DZ5 MIR20A-201ENST00000362279 71 ntBASIC0.63□□□□□ -2.31
CLIP3Q96DZ5 RNU6-698P-201ENST00000363523 107 ntBASIC0.63□□□□□ -2.31
CLIP3Q96DZ5 RNU6-34P-201ENST00000364874 107 ntBASIC0.63□□□□□ -2.31
CLIP3Q96DZ5 AC098934.3-201ENST00000430450 190 ntBASIC0.63□□□□□ -2.31
CLIP3Q96DZ5 RNU6-92P-201ENST00000605893 104 ntBASIC0.63□□□□□ -2.31
CLIP3Q96DZ5 SNORD60.1-201ENST00000362451 73 ntBASIC0.62□□□□□ -2.31
CLIP3Q96DZ5 RNU6-829P-201ENST00000363700 112 ntBASIC0.62□□□□□ -2.31
CLIP3Q96DZ5 RNU6-302P-201ENST00000365249 107 ntBASIC0.62□□□□□ -2.31
CLIP3Q96DZ5 Y_RNA.423-201ENST00000384057 113 ntBASIC0.62□□□□□ -2.31
CLIP3Q96DZ5 MIR517B-201ENST00000385102 67 ntBASIC0.62□□□□□ -2.31
CLIP3Q96DZ5 MTND4LP19-201ENST00000403051 166 ntBASIC0.62□□□□□ -2.31
CLIP3Q96DZ5 SNORD71-201ENST00000411292 86 ntBASIC0.62□□□□□ -2.31
CLIP3Q96DZ5 RNU6-848P-201ENST00000515948 107 ntBASIC0.62□□□□□ -2.31
CLIP3Q96DZ5 RNU6-617P-201ENST00000516147 107 ntBASIC0.62□□□□□ -2.31
CLIP3Q96DZ5 RNU6-473P-201ENST00000516164 107 ntBASIC0.62□□□□□ -2.31
CLIP3Q96DZ5 RNU6-1049P-201ENST00000516414 107 ntBASIC0.62□□□□□ -2.31
CLIP3Q96DZ5 RNU6-175P-201ENST00000516896 107 ntBASIC0.62□□□□□ -2.31
CLIP3Q96DZ5 MIR466-201ENST00000580653 84 ntBASIC0.62□□□□□ -2.31
CLIP3Q96DZ5 MIR4677-201ENST00000584153 80 ntBASIC0.62□□□□□ -2.31
CLIP3Q96DZ5 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.62□□□□□ -2.31
CLIP3Q96DZ5 RNU6-940P-201ENST00000363433 104 ntBASIC0.61□□□□□ -2.31
CLIP3Q96DZ5 MIR548C-201ENST00000384815 97 ntBASIC0.61□□□□□ -2.31
CLIP3Q96DZ5 RNU6-229P-201ENST00000516614 102 ntBASIC0.61□□□□□ -2.31
CLIP3Q96DZ5 RNU6-122P-201ENST00000516818 107 ntBASIC0.61□□□□□ -2.31
CLIP3Q96DZ5 CYP3A54P-201ENST00000566950 75 ntBASIC0.61□□□□□ -2.31
CLIP3Q96DZ5 uc_338.17-201ENST00000619633 179 ntBASIC0.61□□□□□ -2.31
CLIP3Q96DZ5 MIR6513-201ENST00000621188 64 ntBASIC0.61□□□□□ -2.31
CLIP3Q96DZ5 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.6□□□□□ -2.31
CLIP3Q96DZ5 RNA5SP347-201ENST00000362445 119 ntBASIC0.6□□□□□ -2.31
CLIP3Q96DZ5 RNU6-1079P-201ENST00000362861 110 ntBASIC0.6□□□□□ -2.31
CLIP3Q96DZ5 RNU6-337P-201ENST00000391243 106 ntBASIC0.6□□□□□ -2.31
CLIP3Q96DZ5 RNU7-188P-201ENST00000517063 64 ntBASIC0.6□□□□□ -2.31
CLIP3Q96DZ5 MIR548AD-201ENST00000584780 82 ntBASIC0.6□□□□□ -2.31
CLIP3Q96DZ5 U7.6-201ENST00000610841 64 ntBASIC0.6□□□□□ -2.31
CLIP3Q96DZ5 AC243829.6-201ENST00000612652 106 ntBASIC0.6□□□□□ -2.31
CLIP3Q96DZ5 U6.96-201ENST00000636425 70 ntBASIC0.6□□□□□ -2.31
CLIP3Q96DZ5 RNU6-446P-201ENST00000362827 106 ntBASIC0.59□□□□□ -2.31
CLIP3Q96DZ5 AC243829.3-201ENST00000622177 108 ntBASIC0.59□□□□□ -2.31
CLIP3Q96DZ5 SNORD114-29-201ENST00000364819 70 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 172.9 ms