Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 Y_RNA.580-201ENST00000391004 95 ntBASIC-0.96□□□□□ -2.56
LMX1AQ8TE12 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.96□□□□□ -2.56
LMX1AQ8TE12 RNU6-519P-201ENST00000410590 108 ntBASIC-0.96□□□□□ -2.56
LMX1AQ8TE12 RNU7-120P-201ENST00000459334 63 ntBASIC-0.96□□□□□ -2.56
LMX1AQ8TE12 RNU6-732P-201ENST00000516033 103 ntBASIC-0.96□□□□□ -2.56
LMX1AQ8TE12 RNU6-518P-201ENST00000516056 96 ntBASIC-0.96□□□□□ -2.56
LMX1AQ8TE12 RNU6-426P-201ENST00000516464 97 ntBASIC-0.96□□□□□ -2.56
LMX1AQ8TE12 U7.2-201ENST00000607576 63 ntBASIC-0.96□□□□□ -2.56
LMX1AQ8TE12 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.96□□□□□ -2.56
LMX1AQ8TE12 RNU6-226P-201ENST00000363778 107 ntBASIC-0.97□□□□□ -2.56
LMX1AQ8TE12 RNU6-80P-201ENST00000384195 107 ntBASIC-0.97□□□□□ -2.56
LMX1AQ8TE12 MIR521-2-201ENST00000384818 87 ntBASIC-0.97□□□□□ -2.56
LMX1AQ8TE12 MIR527-201ENST00000385244 85 ntBASIC-0.97□□□□□ -2.56
LMX1AQ8TE12 RNU6-412P-201ENST00000516434 106 ntBASIC-0.97□□□□□ -2.56
LMX1AQ8TE12 RNU7-153P-201ENST00000516455 62 ntBASIC-0.97□□□□□ -2.56
LMX1AQ8TE12 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.97□□□□□ -2.56
LMX1AQ8TE12 U7.5-201ENST00000517224 61 ntBASIC-0.97□□□□□ -2.56
LMX1AQ8TE12 AC006254.2-201ENST00000603259 279 ntBASIC-0.97□□□□□ -2.56
LMX1AQ8TE12 Y_RNA.150-201ENST00000363562 102 ntBASIC-0.98□□□□□ -2.57
LMX1AQ8TE12 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.98□□□□□ -2.57
LMX1AQ8TE12 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.98□□□□□ -2.57
LMX1AQ8TE12 MIR587-201ENST00000384845 96 ntBASIC-0.98□□□□□ -2.57
LMX1AQ8TE12 MIR507-201ENST00000385234 94 ntBASIC-0.98□□□□□ -2.57
LMX1AQ8TE12 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.98□□□□□ -2.57
LMX1AQ8TE12 MTND4LP9-201ENST00000427694 174 ntBASIC-0.98□□□□□ -2.57
LMX1AQ8TE12 RNU7-154P-201ENST00000516194 62 ntBASIC-0.98□□□□□ -2.57
LMX1AQ8TE12 SNORD33.1-201ENST00000516213 88 ntBASIC-0.98□□□□□ -2.57
LMX1AQ8TE12 MIR4679-2-201ENST00000578358 77 ntBASIC-0.98□□□□□ -2.57
LMX1AQ8TE12 MIR548X2-201ENST00000579776 100 ntBASIC-0.98□□□□□ -2.57
LMX1AQ8TE12 MIR4503-201ENST00000582187 83 ntBASIC-0.98□□□□□ -2.57
LMX1AQ8TE12 MIR6129-201ENST00000616087 109 ntBASIC-0.98□□□□□ -2.57
LMX1AQ8TE12 MIR6502-201ENST00000617296 76 ntBASIC-0.98□□□□□ -2.57
LMX1AQ8TE12 Y_RNA.8-201ENST00000362353 102 ntBASIC-0.99□□□□□ -2.57
LMX1AQ8TE12 RNU6-924P-201ENST00000362926 108 ntBASIC-0.99□□□□□ -2.57
LMX1AQ8TE12 SNORD115-27-201ENST00000364430 82 ntBASIC-0.99□□□□□ -2.57
LMX1AQ8TE12 Y_RNA.309-201ENST00000365046 111 ntBASIC-0.99□□□□□ -2.57
LMX1AQ8TE12 RNU6-1113P-201ENST00000384348 107 ntBASIC-0.99□□□□□ -2.57
LMX1AQ8TE12 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.99□□□□□ -2.57
LMX1AQ8TE12 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-0.99□□□□□ -2.57
LMX1AQ8TE12 Y_RNA.662-201ENST00000516028 97 ntBASIC-0.99□□□□□ -2.57
LMX1AQ8TE12 RNU6-656P-201ENST00000516785 107 ntBASIC-0.99□□□□□ -2.57
LMX1AQ8TE12 MIR5009-201ENST00000578736 100 ntBASIC-0.99□□□□□ -2.57
LMX1AQ8TE12 MIR4520-1-201ENST00000582609 70 ntBASIC-0.99□□□□□ -2.57
LMX1AQ8TE12 MIR6739-201ENST00000622461 75 ntBASIC-0.99□□□□□ -2.57
LMX1AQ8TE12 SNORA63-201ENST00000363450 132 ntBASIC-1□□□□□ -2.57
LMX1AQ8TE12 RNA5SP192-201ENST00000364404 120 ntBASIC-1□□□□□ -2.57
LMX1AQ8TE12 SNORD45B-201ENST00000364617 72 ntBASIC-1□□□□□ -2.57
LMX1AQ8TE12 Y_RNA.488-201ENST00000384403 102 ntBASIC-1□□□□□ -2.57
LMX1AQ8TE12 MIR513C-201ENST00000401352 84 ntBASIC-1□□□□□ -2.57
LMX1AQ8TE12 AC090616.4-201ENST00000448026 115 ntBASIC-1□□□□□ -2.57
LMX1AQ8TE12 AL691482.2-201ENST00000457453 84 ntBASIC-1□□□□□ -2.57
LMX1AQ8TE12 MIR4439-201ENST00000583746 80 ntBASIC-1□□□□□ -2.57
LMX1AQ8TE12 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.01□□□□□ -2.57
LMX1AQ8TE12 SNORD58A-201ENST00000383875 65 ntBASIC-1.01□□□□□ -2.57
LMX1AQ8TE12 AL353691.2-201ENST00000443795 59 ntBASIC-1.01□□□□□ -2.57
LMX1AQ8TE12 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-1.01□□□□□ -2.57
LMX1AQ8TE12 MIR3144-201ENST00000579460 79 ntBASIC-1.01□□□□□ -2.57
LMX1AQ8TE12 MIR4796-201ENST00000580742 81 ntBASIC-1.01□□□□□ -2.57
LMX1AQ8TE12 U2.7-201ENST00000619197 100 ntBASIC-1.01□□□□□ -2.57
LMX1AQ8TE12 RNU6-478P-201ENST00000363904 110 ntBASIC-1.02□□□□□ -2.57
LMX1AQ8TE12 Y_RNA.400-201ENST00000383963 111 ntBASIC-1.02□□□□□ -2.57
LMX1AQ8TE12 MIR520D-201ENST00000385002 87 ntBASIC-1.02□□□□□ -2.57
LMX1AQ8TE12 RNU4-61P-201ENST00000411243 107 ntBASIC-1.02□□□□□ -2.57
LMX1AQ8TE12 MTATP6P29-201ENST00000415057 132 ntBASIC-1.02□□□□□ -2.57
LMX1AQ8TE12 Y_RNA.700-201ENST00000516806 100 ntBASIC-1.02□□□□□ -2.57
LMX1AQ8TE12 RNU6-706P-201ENST00000517229 104 ntBASIC-1.02□□□□□ -2.57
LMX1AQ8TE12 RNU6-537P-201ENST00000517277 103 ntBASIC-1.02□□□□□ -2.57
LMX1AQ8TE12 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.02□□□□□ -2.57
LMX1AQ8TE12 AL157777.2-201ENST00000258070 137 ntBASIC-1.03□□□□□ -2.57
LMX1AQ8TE12 RNU5F-1-201ENST00000362507 117 ntBASIC-1.03□□□□□ -2.57
LMX1AQ8TE12 RNU6-257P-201ENST00000410238 98 ntBASIC-1.03□□□□□ -2.57
LMX1AQ8TE12 Y_RNA.606-201ENST00000410579 103 ntBASIC-1.03□□□□□ -2.57
LMX1AQ8TE12 RNA5SP461-201ENST00000516451 104 ntBASIC-1.03□□□□□ -2.57
LMX1AQ8TE12 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-1.03□□□□□ -2.57
LMX1AQ8TE12 MIR5683-201ENST00000636514 76 ntBASIC-1.03□□□□□ -2.57
LMX1AQ8TE12 RNU6-164P-201ENST00000364604 103 ntBASIC-1.04□□□□□ -2.58
LMX1AQ8TE12 Y_RNA.452-201ENST00000384202 108 ntBASIC-1.04□□□□□ -2.58
LMX1AQ8TE12 RNU6-576P-201ENST00000390854 102 ntBASIC-1.04□□□□□ -2.58
LMX1AQ8TE12 Y_RNA.609-201ENST00000410669 89 ntBASIC-1.04□□□□□ -2.58
LMX1AQ8TE12 Y_RNA.649-201ENST00000459077 103 ntBASIC-1.04□□□□□ -2.58
LMX1AQ8TE12 RNU6-904P-201ENST00000516206 101 ntBASIC-1.04□□□□□ -2.58
LMX1AQ8TE12 MIR5591-201ENST00000578248 65 ntBASIC-1.04□□□□□ -2.58
LMX1AQ8TE12 AC004792.1-201ENST00000614523 137 ntBASIC-1.04□□□□□ -2.58
LMX1AQ8TE12 MIR3914-2-201ENST00000637339 95 ntBASIC-1.04□□□□□ -2.58
LMX1AQ8TE12 SNX3P1X-201ENST00000414887 175 ntBASIC-1.05□□□□□ -2.58
LMX1AQ8TE12 AL035461.1-201ENST00000421490 332 ntBASIC-1.05□□□□□ -2.58
LMX1AQ8TE12 RNU6-330P-201ENST00000363015 107 ntBASIC-1.06□□□□□ -2.58
LMX1AQ8TE12 Y_RNA.144-201ENST00000363521 113 ntBASIC-1.06□□□□□ -2.58
LMX1AQ8TE12 Y_RNA.190-201ENST00000363964 101 ntBASIC-1.06□□□□□ -2.58
LMX1AQ8TE12 RNU6-340P-201ENST00000364005 107 ntBASIC-1.06□□□□□ -2.58
LMX1AQ8TE12 RNU6-200P-201ENST00000364743 107 ntBASIC-1.06□□□□□ -2.58
LMX1AQ8TE12 Y_RNA.346-201ENST00000365385 112 ntBASIC-1.06□□□□□ -2.58
LMX1AQ8TE12 RNU6-608P-201ENST00000383927 104 ntBASIC-1.06□□□□□ -2.58
LMX1AQ8TE12 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.06□□□□□ -2.58
LMX1AQ8TE12 MIR487B-201ENST00000385021 84 ntBASIC-1.06□□□□□ -2.58
LMX1AQ8TE12 RNA5SP86-201ENST00000390869 98 ntBASIC-1.06□□□□□ -2.58
LMX1AQ8TE12 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-1.06□□□□□ -2.58
LMX1AQ8TE12 HLA-S-202ENST00000425174 53 ntBASIC-1.06□□□□□ -2.58
LMX1AQ8TE12 RNU7-61P-201ENST00000515897 61 ntBASIC-1.06□□□□□ -2.58
LMX1AQ8TE12 RNU6-168P-201ENST00000516189 101 ntBASIC-1.06□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms