Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 MIR8070-201ENST00000616510 88 ntBASIC0.77□□□□□ -2.29
UBE3DQ7Z6J8 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.76□□□□□ -2.29
UBE3DQ7Z6J8 SNORD114-2-201ENST00000363953 78 ntBASIC0.76□□□□□ -2.29
UBE3DQ7Z6J8 Y_RNA.164-201ENST00000363709 102 ntBASIC0.75□□□□□ -2.29
UBE3DQ7Z6J8 SNORD114-22-201ENST00000365423 72 ntBASIC0.75□□□□□ -2.29
UBE3DQ7Z6J8 MIR582-201ENST00000365731 98 ntBASIC0.75□□□□□ -2.29
UBE3DQ7Z6J8 AL157398.1-201ENST00000452981 186 ntBASIC0.75□□□□□ -2.29
UBE3DQ7Z6J8 MIR520E-201ENST00000384867 87 ntBASIC0.74□□□□□ -2.29
UBE3DQ7Z6J8 MIR146A-201ENST00000385201 99 ntBASIC0.74□□□□□ -2.29
UBE3DQ7Z6J8 AC110620.1-201ENST00000416042 228 ntBASIC0.74□□□□□ -2.29
UBE3DQ7Z6J8 MIR548AD-201ENST00000584780 82 ntBASIC0.73□□□□□ -2.29
UBE3DQ7Z6J8 AL109933.3-201ENST00000619095 188 ntBASIC0.73□□□□□ -2.29
UBE3DQ7Z6J8 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.72□□□□□ -2.29
UBE3DQ7Z6J8 Y_RNA.423-201ENST00000384057 113 ntBASIC0.72□□□□□ -2.29
UBE3DQ7Z6J8 snoU13.13-201ENST00000458842 104 ntBASIC0.72□□□□□ -2.29
UBE3DQ7Z6J8 MIR6504-201ENST00000613520 61 ntBASIC0.72□□□□□ -2.29
UBE3DQ7Z6J8 MIR6755-201ENST00000619993 66 ntBASIC0.72□□□□□ -2.29
UBE3DQ7Z6J8 SNORA33.1-201ENST00000364957 130 ntBASIC0.71□□□□□ -2.3
UBE3DQ7Z6J8 RNA5SP299-201ENST00000391203 116 ntBASIC0.71□□□□□ -2.3
UBE3DQ7Z6J8 SCARNA21.1-201ENST00000515996 128 ntBASIC0.71□□□□□ -2.3
UBE3DQ7Z6J8 MIR4677-201ENST00000584153 80 ntBASIC0.71□□□□□ -2.3
UBE3DQ7Z6J8 MIR516B1-201ENST00000385211 90 ntBASIC0.7□□□□□ -2.3
UBE3DQ7Z6J8 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
UBE3DQ7Z6J8 RNA5SP128-201ENST00000365305 116 ntBASIC0.69□□□□□ -2.3
UBE3DQ7Z6J8 RNU6-945P-201ENST00000383947 107 ntBASIC0.69□□□□□ -2.3
UBE3DQ7Z6J8 MIR501-201ENST00000390204 84 ntBASIC0.69□□□□□ -2.3
UBE3DQ7Z6J8 MIR760-201ENST00000390220 80 ntBASIC0.69□□□□□ -2.3
UBE3DQ7Z6J8 RNU4-54P-201ENST00000516428 129 ntBASIC0.69□□□□□ -2.3
UBE3DQ7Z6J8 U2.7-201ENST00000619197 100 ntBASIC0.69□□□□□ -2.3
UBE3DQ7Z6J8 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
UBE3DQ7Z6J8 AC243829.6-201ENST00000612652 106 ntBASIC0.68□□□□□ -2.3
UBE3DQ7Z6J8 MIR6866-201ENST00000638146 69 ntBASIC0.68□□□□□ -2.3
UBE3DQ7Z6J8 MIR517B-201ENST00000385102 67 ntBASIC0.67□□□□□ -2.3
UBE3DQ7Z6J8 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.67□□□□□ -2.3
UBE3DQ7Z6J8 RPS29P1-201ENST00000465274 159 ntBASIC0.67□□□□□ -2.3
UBE3DQ7Z6J8 CYP3A137P-201ENST00000562436 69 ntBASIC0.67□□□□□ -2.3
UBE3DQ7Z6J8 U6.96-201ENST00000636425 70 ntBASIC0.67□□□□□ -2.3
UBE3DQ7Z6J8 RNU6-698P-201ENST00000363523 107 ntBASIC0.66□□□□□ -2.3
UBE3DQ7Z6J8 SNORA25.5-201ENST00000363782 126 ntBASIC0.66□□□□□ -2.3
UBE3DQ7Z6J8 RNU6-34P-201ENST00000364874 107 ntBASIC0.66□□□□□ -2.3
UBE3DQ7Z6J8 RNU7-188P-201ENST00000517063 64 ntBASIC0.66□□□□□ -2.3
UBE3DQ7Z6J8 AC084368.1-201ENST00000620935 65 ntBASIC0.66□□□□□ -2.3
UBE3DQ7Z6J8 SNORD44.1-201ENST00000363202 61 ntBASIC0.65□□□□□ -2.31
UBE3DQ7Z6J8 RNU6-940P-201ENST00000363433 104 ntBASIC0.65□□□□□ -2.31
UBE3DQ7Z6J8 MIR9-2-201ENST00000384838 87 ntBASIC0.65□□□□□ -2.31
UBE3DQ7Z6J8 SNORD113-2-201ENST00000391082 72 ntBASIC0.65□□□□□ -2.31
UBE3DQ7Z6J8 MIR876-201ENST00000401147 81 ntBASIC0.65□□□□□ -2.31
UBE3DQ7Z6J8 RNU7-174P-201ENST00000516248 59 ntBASIC0.65□□□□□ -2.31
UBE3DQ7Z6J8 RNA5SP121-201ENST00000516537 101 ntBASIC0.65□□□□□ -2.31
UBE3DQ7Z6J8 MIR4452-201ENST00000583004 71 ntBASIC0.65□□□□□ -2.31
UBE3DQ7Z6J8 MIR6835-201ENST00000621552 64 ntBASIC0.65□□□□□ -2.31
UBE3DQ7Z6J8 MIR548C-201ENST00000384815 97 ntBASIC0.64□□□□□ -2.31
UBE3DQ7Z6J8 AL021921.1-201ENST00000442774 93 ntBASIC0.64□□□□□ -2.31
UBE3DQ7Z6J8 SNORA75.1-201ENST00000391130 148 ntBASIC0.63□□□□□ -2.31
UBE3DQ7Z6J8 RNU6-1232P-201ENST00000516299 86 ntBASIC0.63□□□□□ -2.31
UBE3DQ7Z6J8 RNU6-92P-201ENST00000605893 104 ntBASIC0.63□□□□□ -2.31
UBE3DQ7Z6J8 AC243829.3-201ENST00000622177 108 ntBASIC0.63□□□□□ -2.31
UBE3DQ7Z6J8 MIR508-201ENST00000384857 115 ntBASIC0.62□□□□□ -2.31
UBE3DQ7Z6J8 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.62□□□□□ -2.31
UBE3DQ7Z6J8 SNORA9.1-201ENST00000362412 131 ntBASIC0.61□□□□□ -2.31
UBE3DQ7Z6J8 MIR499A-201ENST00000384903 122 ntBASIC0.61□□□□□ -2.31
UBE3DQ7Z6J8 MIR548J-201ENST00000408833 112 ntBASIC0.61□□□□□ -2.31
UBE3DQ7Z6J8 RNU6-175P-201ENST00000516896 107 ntBASIC0.61□□□□□ -2.31
UBE3DQ7Z6J8 CYP3A54P-201ENST00000566950 75 ntBASIC0.61□□□□□ -2.31
UBE3DQ7Z6J8 MIR548V-201ENST00000584165 80 ntBASIC0.61□□□□□ -2.31
UBE3DQ7Z6J8 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.61□□□□□ -2.31
UBE3DQ7Z6J8 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.6□□□□□ -2.31
UBE3DQ7Z6J8 RNU6-499P-201ENST00000365615 107 ntBASIC0.59□□□□□ -2.31
UBE3DQ7Z6J8 MIR106A-201ENST00000384870 81 ntBASIC0.59□□□□□ -2.31
UBE3DQ7Z6J8 MIR6788-201ENST00000618842 66 ntBASIC0.59□□□□□ -2.31
UBE3DQ7Z6J8 SNORA49-201ENST00000386157 136 ntBASIC0.58□□□□□ -2.32
UBE3DQ7Z6J8 RNA5SP470-201ENST00000516463 106 ntBASIC0.58□□□□□ -2.32
UBE3DQ7Z6J8 RNU6-122P-201ENST00000516818 107 ntBASIC0.58□□□□□ -2.32
UBE3DQ7Z6J8 MIR4714-201ENST00000580728 77 ntBASIC0.58□□□□□ -2.32
UBE3DQ7Z6J8 MIR6773-201ENST00000612812 74 ntBASIC0.58□□□□□ -2.32
UBE3DQ7Z6J8 MIRLET7D-201ENST00000362263 87 ntBASIC0.57□□□□□ -2.32
UBE3DQ7Z6J8 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.57□□□□□ -2.32
UBE3DQ7Z6J8 MIR3925-201ENST00000584674 77 ntBASIC0.57□□□□□ -2.32
UBE3DQ7Z6J8 AC090625.1-201ENST00000357130 210 ntBASIC0.56□□□□□ -2.32
UBE3DQ7Z6J8 RNA5SP192-201ENST00000364404 120 ntBASIC0.56□□□□□ -2.32
UBE3DQ7Z6J8 MIR216A-201ENST00000385063 110 ntBASIC0.56□□□□□ -2.32
UBE3DQ7Z6J8 SNORA68.3-201ENST00000515906 83 ntBASIC0.56□□□□□ -2.32
UBE3DQ7Z6J8 RNU7-129P-201ENST00000516128 62 ntBASIC0.56□□□□□ -2.32
UBE3DQ7Z6J8 RNU7-154P-201ENST00000516194 62 ntBASIC0.56□□□□□ -2.32
UBE3DQ7Z6J8 RNU6-782P-201ENST00000516852 104 ntBASIC0.56□□□□□ -2.32
UBE3DQ7Z6J8 SNORD115-25-201ENST00000362619 82 ntBASIC0.55□□□□□ -2.32
UBE3DQ7Z6J8 RNA5SP499-201ENST00000363982 119 ntBASIC0.55□□□□□ -2.32
UBE3DQ7Z6J8 Y_RNA.246-201ENST00000364495 108 ntBASIC0.55□□□□□ -2.32
UBE3DQ7Z6J8 RNU6-1036P-201ENST00000383959 104 ntBASIC0.55□□□□□ -2.32
UBE3DQ7Z6J8 MIR630-201ENST00000384957 97 ntBASIC0.55□□□□□ -2.32
UBE3DQ7Z6J8 Y_RNA.676-201ENST00000516393 96 ntBASIC0.55□□□□□ -2.32
UBE3DQ7Z6J8 uc_338.17-201ENST00000619633 179 ntBASIC0.55□□□□□ -2.32
UBE3DQ7Z6J8 U4.4-201ENST00000620626 117 ntBASIC0.55□□□□□ -2.32
UBE3DQ7Z6J8 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.54□□□□□ -2.32
UBE3DQ7Z6J8 MIR5000-201ENST00000577717 103 ntBASIC0.54□□□□□ -2.32
UBE3DQ7Z6J8 MIR499B-201ENST00000636498 73 ntBASIC0.54□□□□□ -2.32
UBE3DQ7Z6J8 MIRLET7B-201ENST00000385140 83 ntBASIC0.53□□□□□ -2.32
UBE3DQ7Z6J8 RNU6-337P-201ENST00000391243 106 ntBASIC0.53□□□□□ -2.32
UBE3DQ7Z6J8 MIR1255B2-201ENST00000408618 67 ntBASIC0.53□□□□□ -2.32
UBE3DQ7Z6J8 RNU6-518P-201ENST00000516056 96 ntBASIC0.53□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 212.7 ms