Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MIR582-201ENST00000365731 98 ntBASIC0.81□□□□□ -2.28
USP39Q53GS9 Y_RNA.407-201ENST00000383986 113 ntBASIC0.81□□□□□ -2.28
USP39Q53GS9 MIR521-2-201ENST00000384818 87 ntBASIC0.81□□□□□ -2.28
USP39Q53GS9 AC006210.1-201ENST00000424882 111 ntBASIC0.81□□□□□ -2.28
USP39Q53GS9 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.81□□□□□ -2.28
USP39Q53GS9 SCARNA17.3-201ENST00000516381 125 ntBASIC0.81□□□□□ -2.28
USP39Q53GS9 MIR4473-201ENST00000583731 91 ntBASIC0.81□□□□□ -2.28
USP39Q53GS9 AC092634.7-201ENST00000621022 103 ntBASIC0.81□□□□□ -2.28
USP39Q53GS9 MIR6513-201ENST00000621188 64 ntBASIC0.81□□□□□ -2.28
USP39Q53GS9 MIR6835-201ENST00000621552 64 ntBASIC0.81□□□□□ -2.28
USP39Q53GS9 RNU6-351P-201ENST00000516097 100 ntBASIC0.8□□□□□ -2.28
USP39Q53GS9 RNU6-1089P-201ENST00000516473 104 ntBASIC0.8□□□□□ -2.28
USP39Q53GS9 MIR6866-201ENST00000638146 69 ntBASIC0.8□□□□□ -2.28
USP39Q53GS9 RNU6-499P-201ENST00000365615 107 ntBASIC0.79□□□□□ -2.28
USP39Q53GS9 MIR193B-201ENST00000384907 83 ntBASIC0.79□□□□□ -2.28
USP39Q53GS9 RNA5SP299-201ENST00000391203 116 ntBASIC0.79□□□□□ -2.28
USP39Q53GS9 MIR548E-201ENST00000408287 88 ntBASIC0.79□□□□□ -2.28
USP39Q53GS9 HMGN2P22-201ENST00000427588 175 ntBASIC0.79□□□□□ -2.28
USP39Q53GS9 AL157398.1-201ENST00000452981 186 ntBASIC0.79□□□□□ -2.28
USP39Q53GS9 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.79□□□□□ -2.28
USP39Q53GS9 RNA5SP215-201ENST00000363440 122 ntBASIC0.78□□□□□ -2.28
USP39Q53GS9 MIR146A-201ENST00000385201 99 ntBASIC0.78□□□□□ -2.28
USP39Q53GS9 AC021146.9-201ENST00000512503 156 ntBASIC0.78□□□□□ -2.28
USP39Q53GS9 RNU6-1162P-201ENST00000384443 104 ntBASIC0.77□□□□□ -2.29
USP39Q53GS9 MIR508-201ENST00000384857 115 ntBASIC0.77□□□□□ -2.29
USP39Q53GS9 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.77□□□□□ -2.29
USP39Q53GS9 AC069271.1-201ENST00000445577 156 ntBASIC0.77□□□□□ -2.29
USP39Q53GS9 SCARNA21.1-201ENST00000515996 128 ntBASIC0.77□□□□□ -2.29
USP39Q53GS9 MIR1273G-201ENST00000577677 100 ntBASIC0.77□□□□□ -2.29
USP39Q53GS9 AL590095.2-201ENST00000604136 117 ntBASIC0.77□□□□□ -2.29
USP39Q53GS9 SNORA25.5-201ENST00000363782 126 ntBASIC0.76□□□□□ -2.29
USP39Q53GS9 SNORA63.6-201ENST00000364921 119 ntBASIC0.76□□□□□ -2.29
USP39Q53GS9 SNORA33.1-201ENST00000364957 130 ntBASIC0.76□□□□□ -2.29
USP39Q53GS9 MIR140-201ENST00000385282 100 ntBASIC0.76□□□□□ -2.29
USP39Q53GS9 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.76□□□□□ -2.29
USP39Q53GS9 SNORD118-201ENST00000363593 134 ntBASIC0.75□□□□□ -2.29
USP39Q53GS9 RNA5SP192-201ENST00000364404 120 ntBASIC0.75□□□□□ -2.29
USP39Q53GS9 SNORA36.2-201ENST00000384004 127 ntBASIC0.75□□□□□ -2.29
USP39Q53GS9 MIR936-201ENST00000401264 98 ntBASIC0.75□□□□□ -2.29
USP39Q53GS9 SNORA25.18-201ENST00000607153 114 ntBASIC0.75□□□□□ -2.29
USP39Q53GS9 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.75□□□□□ -2.29
USP39Q53GS9 SNORD114-23-201ENST00000363536 72 ntBASIC0.74□□□□□ -2.29
USP39Q53GS9 SNORA15B-2-201ENST00000384058 135 ntBASIC0.74□□□□□ -2.29
USP39Q53GS9 SNORA15B-1-201ENST00000384334 135 ntBASIC0.74□□□□□ -2.29
USP39Q53GS9 MIR633-201ENST00000384821 98 ntBASIC0.74□□□□□ -2.29
USP39Q53GS9 MIR5706-201ENST00000579841 80 ntBASIC0.74□□□□□ -2.29
USP39Q53GS9 U2.7-201ENST00000619197 100 ntBASIC0.74□□□□□ -2.29
USP39Q53GS9 Y_RNA.125-201ENST00000363371 111 ntBASIC0.73□□□□□ -2.29
USP39Q53GS9 RNU6-110P-201ENST00000384508 104 ntBASIC0.73□□□□□ -2.29
USP39Q53GS9 uc_338.10-201ENST00000621872 182 ntBASIC0.73□□□□□ -2.29
USP39Q53GS9 AC010487.4-201ENST00000637027 61 ntBASIC0.73□□□□□ -2.29
USP39Q53GS9 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.72□□□□□ -2.29
USP39Q53GS9 RNU7-174P-201ENST00000516248 59 ntBASIC0.72□□□□□ -2.29
USP39Q53GS9 RNU6-1232P-201ENST00000516299 86 ntBASIC0.72□□□□□ -2.29
USP39Q53GS9 RNA5SP347-201ENST00000362445 119 ntBASIC0.71□□□□□ -2.3
USP39Q53GS9 MTND4LP19-201ENST00000403051 166 ntBASIC0.71□□□□□ -2.3
USP39Q53GS9 AC079150.2-201ENST00000443733 78 ntBASIC0.71□□□□□ -2.3
USP39Q53GS9 RNU4-54P-201ENST00000516428 129 ntBASIC0.71□□□□□ -2.3
USP39Q53GS9 MIR548V-201ENST00000584165 80 ntBASIC0.71□□□□□ -2.3
USP39Q53GS9 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.7□□□□□ -2.3
USP39Q53GS9 MIR630-201ENST00000384957 97 ntBASIC0.7□□□□□ -2.3
USP39Q53GS9 SNORA75.1-201ENST00000391130 148 ntBASIC0.7□□□□□ -2.3
USP39Q53GS9 SNORA40.8-201ENST00000411034 126 ntBASIC0.7□□□□□ -2.3
USP39Q53GS9 MIR6755-201ENST00000619993 66 ntBASIC0.7□□□□□ -2.3
USP39Q53GS9 Y_RNA.374-201ENST00000365606 101 ntBASIC0.69□□□□□ -2.3
USP39Q53GS9 MIR516B1-201ENST00000385211 90 ntBASIC0.69□□□□□ -2.3
USP39Q53GS9 MIR466-201ENST00000580653 84 ntBASIC0.69□□□□□ -2.3
USP39Q53GS9 U4.4-201ENST00000620626 117 ntBASIC0.69□□□□□ -2.3
USP39Q53GS9 AC090617.8-201ENST00000623339 167 ntBASIC0.69□□□□□ -2.3
USP39Q53GS9 MIR924-201ENST00000638017 53 ntBASIC0.69□□□□□ -2.3
USP39Q53GS9 MIR518A1-201ENST00000385068 85 ntBASIC0.68□□□□□ -2.3
USP39Q53GS9 AC244090.1-201ENST00000441884 93 ntBASIC0.68□□□□□ -2.3
USP39Q53GS9 RNU6-92P-201ENST00000605893 104 ntBASIC0.68□□□□□ -2.3
USP39Q53GS9 RNU6-1079P-201ENST00000362861 110 ntBASIC0.67□□□□□ -2.3
USP39Q53GS9 RNU6-940P-201ENST00000363433 104 ntBASIC0.67□□□□□ -2.3
USP39Q53GS9 RNU6-698P-201ENST00000363523 107 ntBASIC0.67□□□□□ -2.3
USP39Q53GS9 RNU6-829P-201ENST00000363700 112 ntBASIC0.67□□□□□ -2.3
USP39Q53GS9 RNU6-34P-201ENST00000364874 107 ntBASIC0.67□□□□□ -2.3
USP39Q53GS9 RNU6-302P-201ENST00000365249 107 ntBASIC0.67□□□□□ -2.3
USP39Q53GS9 MIR548C-201ENST00000384815 97 ntBASIC0.67□□□□□ -2.3
USP39Q53GS9 MIR517B-201ENST00000385102 67 ntBASIC0.67□□□□□ -2.3
USP39Q53GS9 RNU6-122P-201ENST00000516818 107 ntBASIC0.67□□□□□ -2.3
USP39Q53GS9 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.67□□□□□ -2.3
USP39Q53GS9 MIR20A-201ENST00000362279 71 ntBASIC0.66□□□□□ -2.3
USP39Q53GS9 RNA5SP457-201ENST00000363657 124 ntBASIC0.66□□□□□ -2.3
USP39Q53GS9 SNORA2A-201ENST00000383885 135 ntBASIC0.66□□□□□ -2.3
USP39Q53GS9 Y_RNA.423-201ENST00000384057 113 ntBASIC0.66□□□□□ -2.3
USP39Q53GS9 SNORA49-201ENST00000386157 136 ntBASIC0.66□□□□□ -2.3
USP39Q53GS9 RNU6-229P-201ENST00000516614 102 ntBASIC0.66□□□□□ -2.3
USP39Q53GS9 MIR4711-201ENST00000578274 70 ntBASIC0.66□□□□□ -2.3
USP39Q53GS9 SNORD60.1-201ENST00000362451 73 ntBASIC0.65□□□□□ -2.31
USP39Q53GS9 RNU6-446P-201ENST00000362827 106 ntBASIC0.65□□□□□ -2.31
USP39Q53GS9 RNU6-987P-201ENST00000384759 104 ntBASIC0.65□□□□□ -2.31
USP39Q53GS9 MIR501-201ENST00000390204 84 ntBASIC0.65□□□□□ -2.31
USP39Q53GS9 RNU4-37P-201ENST00000410214 84 ntBASIC0.65□□□□□ -2.31
USP39Q53GS9 AC098934.3-201ENST00000430450 190 ntBASIC0.65□□□□□ -2.31
USP39Q53GS9 RNU6-175P-201ENST00000516896 107 ntBASIC0.65□□□□□ -2.31
USP39Q53GS9 CYP3A54P-201ENST00000566950 75 ntBASIC0.65□□□□□ -2.31
USP39Q53GS9 RNA5SP193-201ENST00000410353 107 ntBASIC0.64□□□□□ -2.31
USP39Q53GS9 RNU7-188P-201ENST00000517063 64 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 197.9 ms