Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.2□□□□□ -2.22
MSX1P28360 RNA5SP61-201ENST00000516453 100 ntBASIC1.2□□□□□ -2.22
MSX1P28360 AL353765.1-201ENST00000605514 183 ntBASIC1.2□□□□□ -2.22
MSX1P28360 MIR96-201ENST00000362288 78 ntBASIC1.19□□□□□ -2.22
MSX1P28360 SNORD114-27-201ENST00000363766 70 ntBASIC1.19□□□□□ -2.22
MSX1P28360 MIR4752-201ENST00000579672 72 ntBASIC1.19□□□□□ -2.22
MSX1P28360 SNORD114-26-201ENST00000363543 72 ntBASIC1.18□□□□□ -2.22
MSX1P28360 Y_RNA.540-201ENST00000384638 111 ntBASIC1.18□□□□□ -2.22
MSX1P28360 MIR3660-201ENST00000584845 100 ntBASIC1.18□□□□□ -2.22
MSX1P28360 HMGN2P22-201ENST00000427588 175 ntBASIC1.17□□□□□ -2.22
MSX1P28360 MIR5706-201ENST00000579841 80 ntBASIC1.17□□□□□ -2.22
MSX1P28360 U6.96-201ENST00000636425 70 ntBASIC1.17□□□□□ -2.22
MSX1P28360 RPS29P1-201ENST00000465274 159 ntBASIC1.16□□□□□ -2.22
MSX1P28360 CYP3A54P-201ENST00000566950 75 ntBASIC1.16□□□□□ -2.22
MSX1P28360 AC022709.1-201ENST00000615967 87 ntBASIC1.16□□□□□ -2.22
MSX1P28360 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
MSX1P28360 MIR520E-201ENST00000384867 87 ntBASIC1.15□□□□□ -2.23
MSX1P28360 MIR516B1-201ENST00000385211 90 ntBASIC1.15□□□□□ -2.23
MSX1P28360 Y_RNA.722-201ENST00000517279 114 ntBASIC1.15□□□□□ -2.23
MSX1P28360 MIR20A-201ENST00000362279 71 ntBASIC1.14□□□□□ -2.23
MSX1P28360 Y_RNA.246-201ENST00000364495 108 ntBASIC1.14□□□□□ -2.23
MSX1P28360 RNA5SP517-201ENST00000364724 117 ntBASIC1.14□□□□□ -2.23
MSX1P28360 SNORD113-4-201ENST00000364802 75 ntBASIC1.14□□□□□ -2.23
MSX1P28360 AC244090.1-201ENST00000441884 93 ntBASIC1.14□□□□□ -2.23
MSX1P28360 RNU1-29P-201ENST00000606574 126 ntBASIC1.14□□□□□ -2.23
MSX1P28360 MIR7978-201ENST00000636158 59 ntBASIC1.14□□□□□ -2.23
MSX1P28360 SNORA36.2-201ENST00000384004 127 ntBASIC1.13□□□□□ -2.23
MSX1P28360 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.13□□□□□ -2.23
MSX1P28360 AC068338.1-201ENST00000565567 176 ntBASIC1.13□□□□□ -2.23
MSX1P28360 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.13□□□□□ -2.23
MSX1P28360 RNU1-93P-201ENST00000364704 169 ntBASIC1.12□□□□□ -2.23
MSX1P28360 RNY1P8-201ENST00000383970 114 ntBASIC1.12□□□□□ -2.23
MSX1P28360 RNU6-808P-201ENST00000391233 108 ntBASIC1.12□□□□□ -2.23
MSX1P28360 AL021921.1-201ENST00000442774 93 ntBASIC1.12□□□□□ -2.23
MSX1P28360 AC069271.1-201ENST00000445577 156 ntBASIC1.12□□□□□ -2.23
MSX1P28360 MIR4661-201ENST00000582720 75 ntBASIC1.12□□□□□ -2.23
MSX1P28360 AC243829.6-201ENST00000612652 106 ntBASIC1.12□□□□□ -2.23
MSX1P28360 Y_RNA.325-201ENST00000365171 122 ntBASIC1.11□□□□□ -2.23
MSX1P28360 MIR598-201ENST00000384868 97 ntBASIC1.11□□□□□ -2.23
MSX1P28360 PVT1_3.1-201ENST00000620853 95 ntBASIC1.11□□□□□ -2.23
MSX1P28360 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.1□□□□□ -2.23
MSX1P28360 Y_RNA.374-201ENST00000365606 101 ntBASIC1.1□□□□□ -2.23
MSX1P28360 RNU6-520P-201ENST00000384717 104 ntBASIC1.1□□□□□ -2.23
MSX1P28360 MIR140-201ENST00000385282 100 ntBASIC1.1□□□□□ -2.23
MSX1P28360 RNU6-1223P-201ENST00000517124 104 ntBASIC1.1□□□□□ -2.23
MSX1P28360 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
MSX1P28360 RNU6-936P-201ENST00000384005 107 ntBASIC1.09□□□□□ -2.23
MSX1P28360 U7.6-201ENST00000610841 64 ntBASIC1.09□□□□□ -2.23
MSX1P28360 SNORA41B-201ENST00000384785 128 ntBASIC1.08□□□□□ -2.24
MSX1P28360 MIR548J-201ENST00000408833 112 ntBASIC1.08□□□□□ -2.24
MSX1P28360 SNORD2-201ENST00000459163 69 ntBASIC1.08□□□□□ -2.24
MSX1P28360 MIR151B-201ENST00000584249 96 ntBASIC1.08□□□□□ -2.24
MSX1P28360 SNORA25.18-201ENST00000607153 114 ntBASIC1.08□□□□□ -2.24
MSX1P28360 AC090617.8-201ENST00000623339 167 ntBASIC1.08□□□□□ -2.24
MSX1P28360 SNORA9.1-201ENST00000362412 131 ntBASIC1.07□□□□□ -2.24
MSX1P28360 SNORD118-201ENST00000363593 134 ntBASIC1.07□□□□□ -2.24
MSX1P28360 SNORD114-29-201ENST00000364819 70 ntBASIC1.07□□□□□ -2.24
MSX1P28360 MIR6788-201ENST00000618842 66 ntBASIC1.07□□□□□ -2.24
MSX1P28360 AC243829.3-201ENST00000622177 108 ntBASIC1.07□□□□□ -2.24
MSX1P28360 SNORA2A-201ENST00000383885 135 ntBASIC1.06□□□□□ -2.24
MSX1P28360 RNU6-1246P-201ENST00000391064 107 ntBASIC1.06□□□□□ -2.24
MSX1P28360 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.06□□□□□ -2.24
MSX1P28360 RNU6-518P-201ENST00000516056 96 ntBASIC1.06□□□□□ -2.24
MSX1P28360 ACA64.5-201ENST00000516207 127 ntBASIC1.06□□□□□ -2.24
MSX1P28360 Y_RNA.74-201ENST00000362911 99 ntBASIC1.05□□□□□ -2.24
MSX1P28360 RNU6-1184P-201ENST00000384588 108 ntBASIC1.05□□□□□ -2.24
MSX1P28360 MIR1255B2-201ENST00000408618 67 ntBASIC1.05□□□□□ -2.24
MSX1P28360 SNORA40.8-201ENST00000411034 126 ntBASIC1.05□□□□□ -2.24
MSX1P28360 OR2A41P-201ENST00000473586 105 ntBASIC1.05□□□□□ -2.24
MSX1P28360 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
MSX1P28360 MIR608-201ENST00000384820 100 ntBASIC1.04□□□□□ -2.24
MSX1P28360 RNU7-119P-201ENST00000459279 63 ntBASIC1.04□□□□□ -2.24
MSX1P28360 RNU6-229P-201ENST00000516614 102 ntBASIC1.04□□□□□ -2.24
MSX1P28360 RNU6-1312P-201ENST00000362425 108 ntBASIC1.03□□□□□ -2.24
MSX1P28360 AC087343.1-201ENST00000477341 475 ntBASIC1.03□□□□□ -2.24
MSX1P28360 RNA5SP436-201ENST00000516020 115 ntBASIC1.03□□□□□ -2.24
MSX1P28360 MIR4295-201ENST00000585286 85 ntBASIC1.03□□□□□ -2.24
MSX1P28360 MIR6767-201ENST00000637302 66 ntBASIC1.03□□□□□ -2.24
MSX1P28360 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC1.02□□□□□ -2.25
MSX1P28360 MIR519A2-201ENST00000384990 87 ntBASIC1.02□□□□□ -2.25
MSX1P28360 SNORD71-201ENST00000411292 86 ntBASIC1.01□□□□□ -2.25
MSX1P28360 RNU7-188P-201ENST00000517063 64 ntBASIC1.01□□□□□ -2.25
MSX1P28360 Y_RNA.423-201ENST00000384057 113 ntBASIC1□□□□□ -2.25
MSX1P28360 SNORD116-16-201ENST00000384533 92 ntBASIC1□□□□□ -2.25
MSX1P28360 RNU6-337P-201ENST00000391243 106 ntBASIC1□□□□□ -2.25
MSX1P28360 MIR6773-201ENST00000612812 74 ntBASIC1□□□□□ -2.25
MSX1P28360 RNU6-848P-201ENST00000515948 107 ntBASIC0.99□□□□□ -2.25
MSX1P28360 RNU6-617P-201ENST00000516147 107 ntBASIC0.99□□□□□ -2.25
MSX1P28360 RNU6-473P-201ENST00000516164 107 ntBASIC0.99□□□□□ -2.25
MSX1P28360 RNU6-1232P-201ENST00000516299 86 ntBASIC0.99□□□□□ -2.25
MSX1P28360 RNU6-1049P-201ENST00000516414 107 ntBASIC0.99□□□□□ -2.25
MSX1P28360 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.99□□□□□ -2.25
MSX1P28360 Y_RNA.30-201ENST00000362572 97 ntBASIC0.98□□□□□ -2.25
MSX1P28360 Y_RNA.282-201ENST00000364793 102 ntBASIC0.98□□□□□ -2.25
MSX1P28360 MIR518A1-201ENST00000385068 85 ntBASIC0.98□□□□□ -2.25
MSX1P28360 SNORA49-201ENST00000386157 136 ntBASIC0.98□□□□□ -2.25
MSX1P28360 MIR1285-1-201ENST00000408593 84 ntBASIC0.98□□□□□ -2.25
MSX1P28360 RNU6-175P-201ENST00000516896 107 ntBASIC0.98□□□□□ -2.25
MSX1P28360 RNU6-231P-201ENST00000517122 103 ntBASIC0.98□□□□□ -2.25
MSX1P28360 MIR4677-201ENST00000584153 80 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 211.2 ms