Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 MIR103A1-201ENST00000362165 78 ntBASIC0.38□□□□□ -2.35
HOXD9P28356 MIR7-2-201ENST00000384970 110 ntBASIC0.38□□□□□ -2.35
HOXD9P28356 RNU7-129P-201ENST00000516128 62 ntBASIC0.38□□□□□ -2.35
HOXD9P28356 MIR3134-201ENST00000579433 74 ntBASIC0.38□□□□□ -2.35
HOXD9P28356 MIR6779-201ENST00000617283 64 ntBASIC0.38□□□□□ -2.35
HOXD9P28356 RNU6-411P-201ENST00000384451 107 ntBASIC0.37□□□□□ -2.35
HOXD9P28356 RNU6-70P-201ENST00000516438 60 ntBASIC0.37□□□□□ -2.35
HOXD9P28356 SNORA40.17-201ENST00000517256 115 ntBASIC0.37□□□□□ -2.35
HOXD9P28356 MIR3657-201ENST00000584818 117 ntBASIC0.37□□□□□ -2.35
HOXD9P28356 SNORA2.1-201ENST00000363089 137 ntBASIC0.36□□□□□ -2.35
HOXD9P28356 MIR203A-201ENST00000384836 110 ntBASIC0.36□□□□□ -2.35
HOXD9P28356 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.36□□□□□ -2.35
HOXD9P28356 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.35□□□□□ -2.35
HOXD9P28356 SNORA9.1-201ENST00000362412 131 ntBASIC0.35□□□□□ -2.35
HOXD9P28356 SNORA50A-201ENST00000384225 134 ntBASIC0.35□□□□□ -2.35
HOXD9P28356 MIR193B-201ENST00000384907 83 ntBASIC0.35□□□□□ -2.35
HOXD9P28356 AC244090.1-201ENST00000441884 93 ntBASIC0.35□□□□□ -2.35
HOXD9P28356 RNU6-523P-201ENST00000516304 54 ntBASIC0.35□□□□□ -2.35
HOXD9P28356 MIR20A-201ENST00000362279 71 ntBASIC0.34□□□□□ -2.36
HOXD9P28356 RNU6-990P-201ENST00000364385 104 ntBASIC0.34□□□□□ -2.36
HOXD9P28356 Y_RNA.250-201ENST00000364542 110 ntBASIC0.34□□□□□ -2.36
HOXD9P28356 RNU6-1327P-201ENST00000365302 105 ntBASIC0.34□□□□□ -2.36
HOXD9P28356 RNU6-1296P-201ENST00000383879 107 ntBASIC0.34□□□□□ -2.36
HOXD9P28356 MIR516B1-201ENST00000385211 90 ntBASIC0.34□□□□□ -2.36
HOXD9P28356 RNU6-687P-201ENST00000516443 89 ntBASIC0.34□□□□□ -2.36
HOXD9P28356 MIR664A-201ENST00000626086 82 ntBASIC0.34□□□□□ -2.36
HOXD9P28356 Y_RNA.205-201ENST00000364128 113 ntBASIC0.33□□□□□ -2.36
HOXD9P28356 SNORD114-29-201ENST00000364819 70 ntBASIC0.33□□□□□ -2.36
HOXD9P28356 RNU6-815P-201ENST00000384080 113 ntBASIC0.33□□□□□ -2.36
HOXD9P28356 Y_RNA.545-201ENST00000384652 105 ntBASIC0.33□□□□□ -2.36
HOXD9P28356 MIR106A-201ENST00000384870 81 ntBASIC0.33□□□□□ -2.36
HOXD9P28356 AC069113.3-201ENST00000521019 150 ntBASIC0.33□□□□□ -2.36
HOXD9P28356 MIR3925-201ENST00000584674 77 ntBASIC0.33□□□□□ -2.36
HOXD9P28356 MIR499B-201ENST00000636498 73 ntBASIC0.33□□□□□ -2.36
HOXD9P28356 SNORD45.1-201ENST00000363181 77 ntBASIC0.32□□□□□ -2.36
HOXD9P28356 RNU6-1241P-201ENST00000384536 107 ntBASIC0.32□□□□□ -2.36
HOXD9P28356 RNU6-587P-201ENST00000391282 106 ntBASIC0.32□□□□□ -2.36
HOXD9P28356 MIR876-201ENST00000401147 81 ntBASIC0.32□□□□□ -2.36
HOXD9P28356 MIR548E-201ENST00000408287 88 ntBASIC0.32□□□□□ -2.36
HOXD9P28356 snoU13.13-201ENST00000458842 104 ntBASIC0.32□□□□□ -2.36
HOXD9P28356 AC108740.1-201ENST00000498629 225 ntBASIC0.32□□□□□ -2.36
HOXD9P28356 RNA5SP134-201ENST00000516492 96 ntBASIC0.32□□□□□ -2.36
HOXD9P28356 RNA5SP147-201ENST00000516493 109 ntBASIC0.32□□□□□ -2.36
HOXD9P28356 MIR8053-201ENST00000613344 75 ntBASIC0.32□□□□□ -2.36
HOXD9P28356 RNA5SP62-201ENST00000363457 110 ntBASIC0.31□□□□□ -2.36
HOXD9P28356 RNA5SP325-201ENST00000363756 130 ntBASIC0.31□□□□□ -2.36
HOXD9P28356 MIR582-201ENST00000365731 98 ntBASIC0.31□□□□□ -2.36
HOXD9P28356 AC073261.1-201ENST00000429409 121 ntBASIC0.31□□□□□ -2.36
HOXD9P28356 Y_RNA.633-201ENST00000459107 95 ntBASIC0.31□□□□□ -2.36
HOXD9P28356 RNU6-782P-201ENST00000516852 104 ntBASIC0.31□□□□□ -2.36
HOXD9P28356 MIR1273G-201ENST00000577677 100 ntBASIC0.31□□□□□ -2.36
HOXD9P28356 AC084368.1-201ENST00000620935 65 ntBASIC0.31□□□□□ -2.36
HOXD9P28356 SNORD2-201ENST00000459163 69 ntBASIC0.3□□□□□ -2.36
HOXD9P28356 RNU7-188P-201ENST00000517063 64 ntBASIC0.3□□□□□ -2.36
HOXD9P28356 RNU6-1015P-201ENST00000517121 99 ntBASIC0.3□□□□□ -2.36
HOXD9P28356 MIR6739-201ENST00000622461 75 ntBASIC0.3□□□□□ -2.36
HOXD9P28356 SNORD115-22-201ENST00000364456 82 ntBASIC0.29□□□□□ -2.36
HOXD9P28356 SNORA63.6-201ENST00000364921 119 ntBASIC0.29□□□□□ -2.36
HOXD9P28356 MIR643-201ENST00000385267 97 ntBASIC0.29□□□□□ -2.36
HOXD9P28356 RNU6-127P-201ENST00000390897 107 ntBASIC0.29□□□□□ -2.36
HOXD9P28356 RNU6-175P-201ENST00000516896 107 ntBASIC0.29□□□□□ -2.36
HOXD9P28356 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.29□□□□□ -2.36
HOXD9P28356 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.29□□□□□ -2.36
HOXD9P28356 SNORA75.1-201ENST00000391130 148 ntBASIC0.28□□□□□ -2.36
HOXD9P28356 RNU6-634P-201ENST00000459134 106 ntBASIC0.28□□□□□ -2.36
HOXD9P28356 MIR4315-1-201ENST00000636800 73 ntBASIC0.28□□□□□ -2.36
HOXD9P28356 MIR4315-2-201ENST00000640925 73 ntBASIC0.28□□□□□ -2.36
HOXD9P28356 SNORA15B-2-201ENST00000384058 135 ntBASIC0.27□□□□□ -2.37
HOXD9P28356 SNORA15B-1-201ENST00000384334 135 ntBASIC0.27□□□□□ -2.37
HOXD9P28356 Y_RNA.565-201ENST00000384719 101 ntBASIC0.27□□□□□ -2.37
HOXD9P28356 MIR154-201ENST00000385243 84 ntBASIC0.27□□□□□ -2.37
HOXD9P28356 RNU6-604P-201ENST00000390917 100 ntBASIC0.27□□□□□ -2.37
HOXD9P28356 AC021146.9-201ENST00000512503 156 ntBASIC0.26□□□□□ -2.37
HOXD9P28356 SCARNA11.2-201ENST00000517183 154 ntBASIC0.26□□□□□ -2.37
HOXD9P28356 RN7SL660P-201ENST00000614852 299 ntBASIC0.26□□□□□ -2.37
HOXD9P28356 MIR330-201ENST00000362196 94 ntBASIC0.25□□□□□ -2.37
HOXD9P28356 SNORD113.1-201ENST00000363280 73 ntBASIC0.25□□□□□ -2.37
HOXD9P28356 SNORD115-31-201ENST00000365318 82 ntBASIC0.25□□□□□ -2.37
HOXD9P28356 MIR521-2-201ENST00000384818 87 ntBASIC0.25□□□□□ -2.37
HOXD9P28356 RNU6-1162P-201ENST00000384443 104 ntBASIC0.24□□□□□ -2.37
HOXD9P28356 SNORD45A-201ENST00000384512 84 ntBASIC0.24□□□□□ -2.37
HOXD9P28356 RNU6-871P-201ENST00000516122 100 ntBASIC0.24□□□□□ -2.37
HOXD9P28356 MIR4743-201ENST00000584576 69 ntBASIC0.24□□□□□ -2.37
HOXD9P28356 MIR924-201ENST00000638017 53 ntBASIC0.24□□□□□ -2.37
HOXD9P28356 SNORA49-201ENST00000386157 136 ntBASIC0.23□□□□□ -2.37
HOXD9P28356 MIR548H2-201ENST00000408874 88 ntBASIC0.23□□□□□ -2.37
HOXD9P28356 RNU6-656P-201ENST00000516785 107 ntBASIC0.23□□□□□ -2.37
HOXD9P28356 RNU6-881P-201ENST00000516813 102 ntBASIC0.23□□□□□ -2.37
HOXD9P28356 RNA5SP330-201ENST00000517096 96 ntBASIC0.23□□□□□ -2.37
HOXD9P28356 MIR4514-201ENST00000581410 57 ntBASIC0.23□□□□□ -2.37
HOXD9P28356 SNORA42.1-201ENST00000363515 137 ntBASIC0.22□□□□□ -2.37
HOXD9P28356 RNU6-645P-201ENST00000364649 106 ntBASIC0.22□□□□□ -2.37
HOXD9P28356 MIR892B-201ENST00000401279 77 ntBASIC0.22□□□□□ -2.37
HOXD9P28356 MIR8087-201ENST00000612745 78 ntBASIC0.22□□□□□ -2.37
HOXD9P28356 RNU6-540P-201ENST00000384622 101 ntBASIC0.21□□□□□ -2.38
HOXD9P28356 MIR548C-201ENST00000384815 97 ntBASIC0.21□□□□□ -2.38
HOXD9P28356 RNU6-982P-201ENST00000516216 102 ntBASIC0.21□□□□□ -2.38
HOXD9P28356 RNU6-180P-201ENST00000516697 61 ntBASIC0.21□□□□□ -2.38
HOXD9P28356 AC023932.2-201ENST00000603176 175 ntBASIC0.21□□□□□ -2.38
HOXD9P28356 RNU6-1216P-201ENST00000362590 107 ntBASIC0.2□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 165 ms