Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 SNORD90-201ENST00000391145 111 ntBASIC-2.27□□□□□ -2.77
LIMS3P0CW19 RNA5SP272-201ENST00000516095 111 ntBASIC-2.27□□□□□ -2.77
LIMS3P0CW19 AL117187.1-201ENST00000555482 181 ntBASIC-2.27□□□□□ -2.77
LIMS3P0CW19 Y_RNA.272-201ENST00000364696 102 ntBASIC-2.28□□□□□ -2.77
LIMS3P0CW19 RNU6-732P-201ENST00000516033 103 ntBASIC-2.28□□□□□ -2.77
LIMS3P0CW19 RNU6-1023P-201ENST00000516137 106 ntBASIC-2.28□□□□□ -2.77
LIMS3P0CW19 FAS-AS1.1-201ENST00000615327 126 ntBASIC-2.28□□□□□ -2.77
LIMS3P0CW19 Y_RNA.778-201ENST00000620203 90 ntBASIC-2.28□□□□□ -2.77
LIMS3P0CW19 Y_RNA.95-201ENST00000363079 95 ntBASIC-2.29□□□□□ -2.78
LIMS3P0CW19 RNU6-704P-201ENST00000364162 103 ntBASIC-2.29□□□□□ -2.78
LIMS3P0CW19 RNU6-80P-201ENST00000384195 107 ntBASIC-2.29□□□□□ -2.78
LIMS3P0CW19 SNORA81.3-201ENST00000517283 198 ntBASIC-2.29□□□□□ -2.78
LIMS3P0CW19 MIR4490-201ENST00000582647 84 ntBASIC-2.29□□□□□ -2.78
LIMS3P0CW19 U7.2-201ENST00000607576 63 ntBASIC-2.29□□□□□ -2.78
LIMS3P0CW19 AC141273.2-201ENST00000618989 130 ntBASIC-2.29□□□□□ -2.78
LIMS3P0CW19 SNORD18.1-201ENST00000363807 70 ntBASIC-2.3□□□□□ -2.78
LIMS3P0CW19 SNORA20.1-201ENST00000364790 130 ntBASIC-2.3□□□□□ -2.78
LIMS3P0CW19 MIR519A2-201ENST00000384990 87 ntBASIC-2.3□□□□□ -2.78
LIMS3P0CW19 RNU6-1238P-201ENST00000517215 102 ntBASIC-2.3□□□□□ -2.78
LIMS3P0CW19 MIR3613-201ENST00000579844 87 ntBASIC-2.31□□□□□ -2.78
LIMS3P0CW19 Y_RNA.11-201ENST00000362375 109 ntBASIC-2.32□□□□□ -2.78
LIMS3P0CW19 SNORD58C-201ENST00000365223 64 ntBASIC-2.32□□□□□ -2.78
LIMS3P0CW19 AL078595.1-201ENST00000404458 226 ntBASIC-2.32□□□□□ -2.78
LIMS3P0CW19 RNU6-518P-201ENST00000516056 96 ntBASIC-2.32□□□□□ -2.78
LIMS3P0CW19 Y_RNA.668-201ENST00000516233 93 ntBASIC-2.32□□□□□ -2.78
LIMS3P0CW19 MIR4679-2-201ENST00000578358 77 ntBASIC-2.32□□□□□ -2.78
LIMS3P0CW19 Y_RNA.61-201ENST00000362835 102 ntBASIC-2.33□□□□□ -2.78
LIMS3P0CW19 Y_RNA.426-201ENST00000384068 113 ntBASIC-2.33□□□□□ -2.78
LIMS3P0CW19 MTND3P2-201ENST00000438452 342 ntBASIC-2.34□□□□□ -2.78
LIMS3P0CW19 AL021921.1-201ENST00000442774 93 ntBASIC-2.34□□□□□ -2.78
LIMS3P0CW19 RNU6-1061P-201ENST00000516530 99 ntBASIC-2.34□□□□□ -2.78
LIMS3P0CW19 Y_RNA.346-201ENST00000365385 112 ntBASIC-2.35□□□□□ -2.79
LIMS3P0CW19 Y_RNA.420-201ENST00000384043 110 ntBASIC-2.35□□□□□ -2.79
LIMS3P0CW19 Y_RNA.467-201ENST00000384297 102 ntBASIC-2.35□□□□□ -2.79
LIMS3P0CW19 RNU6-1160P-201ENST00000384546 104 ntBASIC-2.35□□□□□ -2.79
LIMS3P0CW19 Y_RNA.680-201ENST00000516441 93 ntBASIC-2.35□□□□□ -2.79
LIMS3P0CW19 U6.81-201ENST00000612550 106 ntBASIC-2.35□□□□□ -2.79
LIMS3P0CW19 MIR6739-201ENST00000622461 75 ntBASIC-2.35□□□□□ -2.79
LIMS3P0CW19 Y_RNA.223-201ENST00000364290 113 ntBASIC-2.36□□□□□ -2.79
LIMS3P0CW19 MIR1207-201ENST00000408249 87 ntBASIC-2.36□□□□□ -2.79
LIMS3P0CW19 Y_RNA.662-201ENST00000516028 97 ntBASIC-2.36□□□□□ -2.79
LIMS3P0CW19 Y_RNA.701-201ENST00000516812 110 ntBASIC-2.36□□□□□ -2.79
LIMS3P0CW19 MIR5683-201ENST00000636514 76 ntBASIC-2.36□□□□□ -2.79
LIMS3P0CW19 Y_RNA.563-201ENST00000384707 108 ntBASIC-2.37□□□□□ -2.79
LIMS3P0CW19 RNU6-1064P-201ENST00000410626 104 ntBASIC-2.37□□□□□ -2.79
LIMS3P0CW19 SNORA19.1-201ENST00000410656 129 ntBASIC-2.37□□□□□ -2.79
LIMS3P0CW19 AC062037.2-201ENST00000610137 73 ntBASIC-2.37□□□□□ -2.79
LIMS3P0CW19 AL035470.1-201ENST00000622571 220 ntBASIC-2.37□□□□□ -2.79
LIMS3P0CW19 Y_RNA.10-201ENST00000362371 110 ntBASIC-2.38□□□□□ -2.79
LIMS3P0CW19 RNU6-1227P-201ENST00000383981 107 ntBASIC-2.38□□□□□ -2.79
LIMS3P0CW19 Y_RNA.678-201ENST00000516408 96 ntBASIC-2.38□□□□□ -2.79
LIMS3P0CW19 MIR4723-201ENST00000585070 81 ntBASIC-2.38□□□□□ -2.79
LIMS3P0CW19 SNORD115-27-201ENST00000364430 82 ntBASIC-2.39□□□□□ -2.79
LIMS3P0CW19 MIR548X2-201ENST00000579776 100 ntBASIC-2.39□□□□□ -2.79
LIMS3P0CW19 DLEU2_3.2-201ENST00000612883 73 ntBASIC-2.39□□□□□ -2.79
LIMS3P0CW19 Y_RNA.145-201ENST00000363527 102 ntBASIC-2.4□□□□□ -2.79
LIMS3P0CW19 RNU6-880P-201ENST00000384526 107 ntBASIC-2.4□□□□□ -2.79
LIMS3P0CW19 MIR487B-201ENST00000385021 84 ntBASIC-2.4□□□□□ -2.79
LIMS3P0CW19 MIR1302-3-201ENST00000408128 138 ntBASIC-2.4□□□□□ -2.79
LIMS3P0CW19 RNU6-168P-201ENST00000516189 101 ntBASIC-2.41□□□□□ -2.8
LIMS3P0CW19 RNU6-752P-201ENST00000516376 102 ntBASIC-2.41□□□□□ -2.8
LIMS3P0CW19 RNU6-861P-201ENST00000516745 106 ntBASIC-2.41□□□□□ -2.8
LIMS3P0CW19 Y_RNA.225-201ENST00000364326 97 ntBASIC-2.42□□□□□ -2.8
LIMS3P0CW19 Y_RNA.580-201ENST00000391004 95 ntBASIC-2.42□□□□□ -2.8
LIMS3P0CW19 AC008737.2-201ENST00000599446 118 ntBASIC-2.42□□□□□ -2.8
LIMS3P0CW19 Y_RNA.29-201ENST00000362570 113 ntBASIC-2.43□□□□□ -2.8
LIMS3P0CW19 RNU7-88P-201ENST00000458752 63 ntBASIC-2.43□□□□□ -2.8
LIMS3P0CW19 U7.5-201ENST00000517224 61 ntBASIC-2.43□□□□□ -2.8
LIMS3P0CW19 MIR4777-201ENST00000583710 86 ntBASIC-2.43□□□□□ -2.8
LIMS3P0CW19 RNU6-228P-201ENST00000362700 106 ntBASIC-2.44□□□□□ -2.8
LIMS3P0CW19 Y_RNA.297-201ENST00000364950 91 ntBASIC-2.44□□□□□ -2.8
LIMS3P0CW19 RNU6-400P-201ENST00000391173 106 ntBASIC-2.44□□□□□ -2.8
LIMS3P0CW19 SNORD19-201ENST00000391191 68 ntBASIC-2.44□□□□□ -2.8
LIMS3P0CW19 AP002795.1-201ENST00000534879 84 ntBASIC-2.44□□□□□ -2.8
LIMS3P0CW19 MIR5009-201ENST00000578736 100 ntBASIC-2.44□□□□□ -2.8
LIMS3P0CW19 Y_RNA.144-201ENST00000363521 113 ntBASIC-2.45□□□□□ -2.8
LIMS3P0CW19 Y_RNA.459-201ENST00000384251 102 ntBASIC-2.45□□□□□ -2.8
LIMS3P0CW19 Y_RNA.606-201ENST00000410579 103 ntBASIC-2.45□□□□□ -2.8
LIMS3P0CW19 AC108019.1-201ENST00000512540 175 ntBASIC-2.45□□□□□ -2.8
LIMS3P0CW19 Y_RNA.188-201ENST00000363952 111 ntBASIC-2.46□□□□□ -2.8
LIMS3P0CW19 SNORD116-18-201ENST00000383961 92 ntBASIC-2.46□□□□□ -2.8
LIMS3P0CW19 MTCYBP9-201ENST00000431021 303 ntBASIC-2.46□□□□□ -2.8
LIMS3P0CW19 AC090616.4-201ENST00000448026 115 ntBASIC-2.46□□□□□ -2.8
LIMS3P0CW19 AL118496.2-201ENST00000448300 230 ntBASIC-2.46□□□□□ -2.8
LIMS3P0CW19 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-2.46□□□□□ -2.8
LIMS3P0CW19 RNU7-120P-201ENST00000459334 63 ntBASIC-2.46□□□□□ -2.8
LIMS3P0CW19 RNU6-682P-201ENST00000363843 106 ntBASIC-2.47□□□□□ -2.8
LIMS3P0CW19 MIR4796-201ENST00000580742 81 ntBASIC-2.47□□□□□ -2.8
LIMS3P0CW19 Y_RNA.502-201ENST00000384478 113 ntBASIC-2.48□□□□□ -2.81
LIMS3P0CW19 RNU6-246P-201ENST00000384702 107 ntBASIC-2.48□□□□□ -2.81
LIMS3P0CW19 MIR606-201ENST00000384851 96 ntBASIC-2.48□□□□□ -2.81
LIMS3P0CW19 RNU6-119P-201ENST00000364882 107 ntBASIC-2.49□□□□□ -2.81
LIMS3P0CW19 RNU6-1113P-201ENST00000384348 107 ntBASIC-2.49□□□□□ -2.81
LIMS3P0CW19 RNU6-972P-201ENST00000391208 107 ntBASIC-2.49□□□□□ -2.81
LIMS3P0CW19 RPL35AP4-201ENST00000412007 102 ntBASIC-2.49□□□□□ -2.81
LIMS3P0CW19 RNU6-795P-201ENST00000516323 103 ntBASIC-2.49□□□□□ -2.81
LIMS3P0CW19 Y_RNA.705-201ENST00000516862 110 ntBASIC-2.49□□□□□ -2.81
LIMS3P0CW19 RNU6-774P-201ENST00000363238 107 ntBASIC-2.5□□□□□ -2.81
LIMS3P0CW19 SNORD58A-201ENST00000383875 65 ntBASIC-2.5□□□□□ -2.81
LIMS3P0CW19 Y_RNA.630-201ENST00000411370 108 ntBASIC-2.5□□□□□ -2.81
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms