Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
COL3A1P02461 MIR618-201ENST00000385287 98 ntBASIC0.81□□□□□ -2.28
COL3A1P02461 MIR1197-201ENST00000408818 88 ntBASIC0.81□□□□□ -2.28
COL3A1P02461 OR2A41P-201ENST00000473586 105 ntBASIC0.81□□□□□ -2.28
COL3A1P02461 RNU5B-6P-201ENST00000516765 68 ntBASIC0.81□□□□□ -2.28
COL3A1P02461 MIR6739-201ENST00000622461 75 ntBASIC0.81□□□□□ -2.28
COL3A1P02461 RNA5SP215-201ENST00000363440 122 ntBASIC0.8□□□□□ -2.28
COL3A1P02461 RNU6-1162P-201ENST00000384443 104 ntBASIC0.8□□□□□ -2.28
COL3A1P02461 RNA5SP255-201ENST00000516370 107 ntBASIC0.8□□□□□ -2.28
COL3A1P02461 AC018659.1-201ENST00000551083 169 ntBASIC0.8□□□□□ -2.28
COL3A1P02461 MIR6828-201ENST00000636181 60 ntBASIC0.8□□□□□ -2.28
COL3A1P02461 RNA5SP347-201ENST00000362445 119 ntBASIC0.8□□□□□ -2.28
COL3A1P02461 RNU4-45P-201ENST00000365469 141 ntBASIC0.8□□□□□ -2.28
COL3A1P02461 Y_RNA.375-201ENST00000365625 101 ntBASIC0.8□□□□□ -2.28
COL3A1P02461 AC011195.1-201ENST00000578177 177 ntBASIC0.8□□□□□ -2.28
COL3A1P02461 AL162376.1-201ENST00000624117 175 ntBASIC0.8□□□□□ -2.28
COL3A1P02461 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.79□□□□□ -2.28
COL3A1P02461 RNU6-1335P-201ENST00000365426 107 ntBASIC0.79□□□□□ -2.28
COL3A1P02461 MTND4LP19-201ENST00000403051 166 ntBASIC0.79□□□□□ -2.28
COL3A1P02461 SNORD99-201ENST00000408612 74 ntBASIC0.79□□□□□ -2.28
COL3A1P02461 RNA5SP227-201ENST00000516184 113 ntBASIC0.79□□□□□ -2.28
COL3A1P02461 RNA5SP147-201ENST00000516493 109 ntBASIC0.79□□□□□ -2.28
COL3A1P02461 MIR18A-201ENST00000362310 71 ntBASIC0.78□□□□□ -2.28
COL3A1P02461 RNU6-990P-201ENST00000364385 104 ntBASIC0.77□□□□□ -2.29
COL3A1P02461 RNA5SP484-201ENST00000458857 111 ntBASIC0.77□□□□□ -2.29
COL3A1P02461 RNU6-1089P-201ENST00000516473 104 ntBASIC0.77□□□□□ -2.29
COL3A1P02461 RNU6-656P-201ENST00000516785 107 ntBASIC0.77□□□□□ -2.29
COL3A1P02461 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.77□□□□□ -2.29
COL3A1P02461 RNU6-669P-201ENST00000365575 107 ntBASIC0.76□□□□□ -2.29
COL3A1P02461 SNORA15B-2-201ENST00000384058 135 ntBASIC0.76□□□□□ -2.29
COL3A1P02461 SNORA15B-1-201ENST00000384334 135 ntBASIC0.76□□□□□ -2.29
COL3A1P02461 MIR521-2-201ENST00000384818 87 ntBASIC0.76□□□□□ -2.29
COL3A1P02461 RPL39P28-201ENST00000465655 155 ntBASIC0.76□□□□□ -2.29
COL3A1P02461 RNA5SP268-201ENST00000516828 124 ntBASIC0.76□□□□□ -2.29
COL3A1P02461 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.76□□□□□ -2.29
COL3A1P02461 AC092634.7-201ENST00000621022 103 ntBASIC0.76□□□□□ -2.29
COL3A1P02461 RNU6-940P-201ENST00000363433 104 ntBASIC0.75□□□□□ -2.29
COL3A1P02461 SNORA25.5-201ENST00000363782 126 ntBASIC0.75□□□□□ -2.29
COL3A1P02461 SNORD110-201ENST00000408189 75 ntBASIC0.75□□□□□ -2.29
COL3A1P02461 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.75□□□□□ -2.29
COL3A1P02461 Y_RNA.407-201ENST00000383986 113 ntBASIC0.74□□□□□ -2.29
COL3A1P02461 uc_338.10-201ENST00000621872 182 ntBASIC0.74□□□□□ -2.29
COL3A1P02461 SNORA36.1-201ENST00000363424 132 ntBASIC0.73□□□□□ -2.29
COL3A1P02461 RNU6-302P-201ENST00000365249 107 ntBASIC0.73□□□□□ -2.29
COL3A1P02461 RNU4-37P-201ENST00000410214 84 ntBASIC0.73□□□□□ -2.29
COL3A1P02461 AC006210.1-201ENST00000424882 111 ntBASIC0.73□□□□□ -2.29
COL3A1P02461 SCARNA17.3-201ENST00000516381 125 ntBASIC0.73□□□□□ -2.29
COL3A1P02461 SNORA40.17-201ENST00000517256 115 ntBASIC0.73□□□□□ -2.29
COL3A1P02461 AC243829.3-201ENST00000622177 108 ntBASIC0.73□□□□□ -2.29
COL3A1P02461 RNU6-987P-201ENST00000384759 104 ntBASIC0.73□□□□□ -2.29
COL3A1P02461 RNA5SP299-201ENST00000391203 116 ntBASIC0.73□□□□□ -2.29
COL3A1P02461 RNA5SP222-201ENST00000411039 105 ntBASIC0.73□□□□□ -2.29
COL3A1P02461 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.73□□□□□ -2.29
COL3A1P02461 RNA5SP94-201ENST00000516917 108 ntBASIC0.73□□□□□ -2.29
COL3A1P02461 MIR652-201ENST00000385278 98 ntBASIC0.72□□□□□ -2.29
COL3A1P02461 snoU13.13-201ENST00000458842 104 ntBASIC0.72□□□□□ -2.29
COL3A1P02461 RNA5SP192-201ENST00000364404 120 ntBASIC0.71□□□□□ -2.3
COL3A1P02461 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.71□□□□□ -2.3
COL3A1P02461 RNA5SP331-201ENST00000364986 107 ntBASIC0.7□□□□□ -2.3
COL3A1P02461 RNU6-614P-201ENST00000384369 107 ntBASIC0.7□□□□□ -2.3
COL3A1P02461 MIR548C-201ENST00000384815 97 ntBASIC0.7□□□□□ -2.3
COL3A1P02461 MIR92A1-201ENST00000385233 78 ntBASIC0.7□□□□□ -2.3
COL3A1P02461 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.7□□□□□ -2.3
COL3A1P02461 Y_RNA.633-201ENST00000459107 95 ntBASIC0.7□□□□□ -2.3
COL3A1P02461 AC021146.9-201ENST00000512503 156 ntBASIC0.7□□□□□ -2.3
COL3A1P02461 SCARNA21.1-201ENST00000515996 128 ntBASIC0.7□□□□□ -2.3
COL3A1P02461 MIR466-201ENST00000580653 84 ntBASIC0.7□□□□□ -2.3
COL3A1P02461 MIR4661-201ENST00000582720 75 ntBASIC0.7□□□□□ -2.3
COL3A1P02461 AL353765.1-201ENST00000605514 183 ntBASIC0.7□□□□□ -2.3
COL3A1P02461 U6.59-201ENST00000615686 107 ntBASIC0.7□□□□□ -2.3
COL3A1P02461 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.69□□□□□ -2.3
COL3A1P02461 AL157398.1-201ENST00000452981 186 ntBASIC0.69□□□□□ -2.3
COL3A1P02461 MIR5706-201ENST00000579841 80 ntBASIC0.69□□□□□ -2.3
COL3A1P02461 MIR7107-201ENST00000611489 80 ntBASIC0.69□□□□□ -2.3
COL3A1P02461 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
COL3A1P02461 MIR633-201ENST00000384821 98 ntBASIC0.68□□□□□ -2.3
COL3A1P02461 MIR4473-201ENST00000583731 91 ntBASIC0.68□□□□□ -2.3
COL3A1P02461 MIR548V-201ENST00000584165 80 ntBASIC0.68□□□□□ -2.3
COL3A1P02461 RNU6-92P-201ENST00000605893 104 ntBASIC0.68□□□□□ -2.3
COL3A1P02461 SNORA63.6-201ENST00000364921 119 ntBASIC0.67□□□□□ -2.3
COL3A1P02461 MIR517B-201ENST00000385102 67 ntBASIC0.67□□□□□ -2.3
COL3A1P02461 SNORA36.2-201ENST00000384004 127 ntBASIC0.67□□□□□ -2.3
COL3A1P02461 MIR630-201ENST00000384957 97 ntBASIC0.67□□□□□ -2.3
COL3A1P02461 SNORD113-2-201ENST00000391082 72 ntBASIC0.67□□□□□ -2.3
COL3A1P02461 MIR20A-201ENST00000362279 71 ntBASIC0.66□□□□□ -2.3
COL3A1P02461 Y_RNA.125-201ENST00000363371 111 ntBASIC0.66□□□□□ -2.3
COL3A1P02461 RNU6-698P-201ENST00000363523 107 ntBASIC0.66□□□□□ -2.3
COL3A1P02461 RNU6-34P-201ENST00000364874 107 ntBASIC0.66□□□□□ -2.3
COL3A1P02461 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.66□□□□□ -2.3
COL3A1P02461 SNORD2-201ENST00000459163 69 ntBASIC0.66□□□□□ -2.3
COL3A1P02461 RNA5SP285-201ENST00000516619 119 ntBASIC0.66□□□□□ -2.3
COL3A1P02461 MIR548AE1-201ENST00000583292 70 ntBASIC0.66□□□□□ -2.3
COL3A1P02461 SNORA33.1-201ENST00000364957 130 ntBASIC0.65□□□□□ -2.31
COL3A1P02461 AC079150.2-201ENST00000443733 78 ntBASIC0.65□□□□□ -2.31
COL3A1P02461 MIR3938-201ENST00000582157 103 ntBASIC0.65□□□□□ -2.31
COL3A1P02461 U7.6-201ENST00000610841 64 ntBASIC0.65□□□□□ -2.31
COL3A1P02461 SNORA70.25-201ENST00000612741 95 ntBASIC0.65□□□□□ -2.31
COL3A1P02461 U2.7-201ENST00000619197 100 ntBASIC0.65□□□□□ -2.31
COL3A1P02461 RNA5SP517-201ENST00000364724 117 ntBASIC0.64□□□□□ -2.31
COL3A1P02461 SNORA2A-201ENST00000383885 135 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 236.6 ms