Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 U6.111-201ENST00000636093 83 ntBASIC1.1□□□□□ -2.23
ZKSCAN3Q9BRR0 MIR373-201ENST00000362273 69 ntBASIC1.09□□□□□ -2.23
ZKSCAN3Q9BRR0 MIR7-2-201ENST00000384970 110 ntBASIC1.09□□□□□ -2.23
ZKSCAN3Q9BRR0 SNORD113.1-201ENST00000363280 73 ntBASIC1.08□□□□□ -2.24
ZKSCAN3Q9BRR0 MIR203A-201ENST00000384836 110 ntBASIC1.08□□□□□ -2.24
ZKSCAN3Q9BRR0 MIR520E-201ENST00000384867 87 ntBASIC1.08□□□□□ -2.24
ZKSCAN3Q9BRR0 RNU6-260P-201ENST00000384092 107 ntBASIC1.07□□□□□ -2.24
ZKSCAN3Q9BRR0 MIR499A-201ENST00000384903 122 ntBASIC1.07□□□□□ -2.24
ZKSCAN3Q9BRR0 MIR1287-201ENST00000408492 90 ntBASIC1.07□□□□□ -2.24
ZKSCAN3Q9BRR0 RNU5B-6P-201ENST00000516765 68 ntBASIC1.07□□□□□ -2.24
ZKSCAN3Q9BRR0 MIR3657-201ENST00000584818 117 ntBASIC1.07□□□□□ -2.24
ZKSCAN3Q9BRR0 RNU6-1216P-201ENST00000362590 107 ntBASIC1.06□□□□□ -2.24
ZKSCAN3Q9BRR0 SNORA36.2-201ENST00000384004 127 ntBASIC1.06□□□□□ -2.24
ZKSCAN3Q9BRR0 AC006210.1-201ENST00000424882 111 ntBASIC1.06□□□□□ -2.24
ZKSCAN3Q9BRR0 AC103810.9-201ENST00000606688 112 ntBASIC1.06□□□□□ -2.24
ZKSCAN3Q9BRR0 RNU6-800P-201ENST00000384473 103 ntBASIC1.05□□□□□ -2.24
ZKSCAN3Q9BRR0 MIR608-201ENST00000384820 100 ntBASIC1.05□□□□□ -2.24
ZKSCAN3Q9BRR0 MIR532-201ENST00000385025 91 ntBASIC1.05□□□□□ -2.24
ZKSCAN3Q9BRR0 MIR140-201ENST00000385282 100 ntBASIC1.05□□□□□ -2.24
ZKSCAN3Q9BRR0 SNORA2.1-201ENST00000363089 137 ntBASIC1.04□□□□□ -2.24
ZKSCAN3Q9BRR0 RPS29P1-201ENST00000465274 159 ntBASIC1.04□□□□□ -2.24
ZKSCAN3Q9BRR0 AC018659.1-201ENST00000551083 169 ntBASIC1.04□□□□□ -2.24
ZKSCAN3Q9BRR0 MIR4452-201ENST00000583004 71 ntBASIC1.04□□□□□ -2.24
ZKSCAN3Q9BRR0 SNORD110-201ENST00000408189 75 ntBASIC1.03□□□□□ -2.24
ZKSCAN3Q9BRR0 AC125388.1-201ENST00000459631 156 ntBASIC1.03□□□□□ -2.24
ZKSCAN3Q9BRR0 RNY1P8-201ENST00000383970 114 ntBASIC1.02□□□□□ -2.25
ZKSCAN3Q9BRR0 Y_RNA.407-201ENST00000383986 113 ntBASIC1.02□□□□□ -2.25
ZKSCAN3Q9BRR0 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC1.02□□□□□ -2.25
ZKSCAN3Q9BRR0 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.02□□□□□ -2.25
ZKSCAN3Q9BRR0 Y_RNA.224-201ENST00000364308 111 ntBASIC1.01□□□□□ -2.25
ZKSCAN3Q9BRR0 RNA5SP517-201ENST00000364724 117 ntBASIC1.01□□□□□ -2.25
ZKSCAN3Q9BRR0 Y_RNA.386-201ENST00000383913 105 ntBASIC1.01□□□□□ -2.25
ZKSCAN3Q9BRR0 Y_RNA.443-201ENST00000384135 111 ntBASIC1.01□□□□□ -2.25
ZKSCAN3Q9BRR0 RNU6-630P-201ENST00000391258 106 ntBASIC1.01□□□□□ -2.25
ZKSCAN3Q9BRR0 MTND4LP1-201ENST00000446263 157 ntBASIC1.01□□□□□ -2.25
ZKSCAN3Q9BRR0 SNORA25.4-201ENST00000363666 124 ntBASIC1□□□□□ -2.25
ZKSCAN3Q9BRR0 RNU6-990P-201ENST00000364385 104 ntBASIC1□□□□□ -2.25
ZKSCAN3Q9BRR0 Y_RNA.340-201ENST00000365330 92 ntBASIC1□□□□□ -2.25
ZKSCAN3Q9BRR0 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1□□□□□ -2.25
ZKSCAN3Q9BRR0 AC092634.7-201ENST00000621022 103 ntBASIC1□□□□□ -2.25
ZKSCAN3Q9BRR0 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.99□□□□□ -2.25
ZKSCAN3Q9BRR0 Y_RNA.250-201ENST00000364542 110 ntBASIC0.99□□□□□ -2.25
ZKSCAN3Q9BRR0 RNU6-1187P-201ENST00000364771 110 ntBASIC0.99□□□□□ -2.25
ZKSCAN3Q9BRR0 SNORD116-24-201ENST00000384549 92 ntBASIC0.99□□□□□ -2.25
ZKSCAN3Q9BRR0 RNU6-982P-201ENST00000516216 102 ntBASIC0.99□□□□□ -2.25
ZKSCAN3Q9BRR0 AC005520.4-201ENST00000604337 90 ntBASIC0.99□□□□□ -2.25
ZKSCAN3Q9BRR0 RNU6-110P-201ENST00000384508 104 ntBASIC0.98□□□□□ -2.25
ZKSCAN3Q9BRR0 ACA64.5-201ENST00000516207 127 ntBASIC0.98□□□□□ -2.25
ZKSCAN3Q9BRR0 AC211469.2-201ENST00000605461 205 ntBASIC0.98□□□□□ -2.25
ZKSCAN3Q9BRR0 MIR6857-201ENST00000613267 93 ntBASIC0.98□□□□□ -2.25
ZKSCAN3Q9BRR0 SNORA40.17-201ENST00000517256 115 ntBASIC0.97□□□□□ -2.25
ZKSCAN3Q9BRR0 MIR5706-201ENST00000579841 80 ntBASIC0.97□□□□□ -2.25
ZKSCAN3Q9BRR0 MIR4473-201ENST00000583731 91 ntBASIC0.97□□□□□ -2.25
ZKSCAN3Q9BRR0 SNORA70.25-201ENST00000612741 95 ntBASIC0.97□□□□□ -2.25
ZKSCAN3Q9BRR0 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
ZKSCAN3Q9BRR0 SNORA40.8-201ENST00000411034 126 ntBASIC0.96□□□□□ -2.26
ZKSCAN3Q9BRR0 RPL39P28-201ENST00000465655 155 ntBASIC0.96□□□□□ -2.26
ZKSCAN3Q9BRR0 SCARNA17.3-201ENST00000516381 125 ntBASIC0.96□□□□□ -2.26
ZKSCAN3Q9BRR0 RNA5SP147-201ENST00000516493 109 ntBASIC0.96□□□□□ -2.26
ZKSCAN3Q9BRR0 MIR4752-201ENST00000579672 72 ntBASIC0.96□□□□□ -2.26
ZKSCAN3Q9BRR0 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.96□□□□□ -2.26
ZKSCAN3Q9BRR0 SNORD118-201ENST00000363593 134 ntBASIC0.95□□□□□ -2.26
ZKSCAN3Q9BRR0 RNU6-645P-201ENST00000364649 106 ntBASIC0.95□□□□□ -2.26
ZKSCAN3Q9BRR0 RNU6-471P-201ENST00000383944 106 ntBASIC0.95□□□□□ -2.26
ZKSCAN3Q9BRR0 SNORD71-201ENST00000411292 86 ntBASIC0.95□□□□□ -2.26
ZKSCAN3Q9BRR0 SNORA25.18-201ENST00000607153 114 ntBASIC0.95□□□□□ -2.26
ZKSCAN3Q9BRR0 SNORD114-2-201ENST00000363953 78 ntBASIC0.94□□□□□ -2.26
ZKSCAN3Q9BRR0 RNU6-668P-201ENST00000364180 107 ntBASIC0.94□□□□□ -2.26
ZKSCAN3Q9BRR0 MIR652-201ENST00000385278 98 ntBASIC0.94□□□□□ -2.26
ZKSCAN3Q9BRR0 MIR1265-201ENST00000408444 86 ntBASIC0.94□□□□□ -2.26
ZKSCAN3Q9BRR0 AC069271.1-201ENST00000445577 156 ntBASIC0.94□□□□□ -2.26
ZKSCAN3Q9BRR0 MIR548AE1-201ENST00000583292 70 ntBASIC0.94□□□□□ -2.26
ZKSCAN3Q9BRR0 MIR6739-201ENST00000622461 75 ntBASIC0.94□□□□□ -2.26
ZKSCAN3Q9BRR0 MIR548J-201ENST00000408833 112 ntBASIC0.93□□□□□ -2.26
ZKSCAN3Q9BRR0 RNU6-351P-201ENST00000516097 100 ntBASIC0.92□□□□□ -2.26
ZKSCAN3Q9BRR0 AL590095.2-201ENST00000604136 117 ntBASIC0.92□□□□□ -2.26
ZKSCAN3Q9BRR0 RNU1-29P-201ENST00000606574 126 ntBASIC0.92□□□□□ -2.26
ZKSCAN3Q9BRR0 uc_338.10-201ENST00000621872 182 ntBASIC0.92□□□□□ -2.26
ZKSCAN3Q9BRR0 Y_RNA.205-201ENST00000364128 113 ntBASIC0.91□□□□□ -2.26
ZKSCAN3Q9BRR0 RNU6-1162P-201ENST00000384443 104 ntBASIC0.91□□□□□ -2.26
ZKSCAN3Q9BRR0 AC021146.9-201ENST00000512503 156 ntBASIC0.91□□□□□ -2.26
ZKSCAN3Q9BRR0 PSMC1P5-201ENST00000512850 177 ntBASIC0.91□□□□□ -2.26
ZKSCAN3Q9BRR0 U7.6-201ENST00000610841 64 ntBASIC0.91□□□□□ -2.26
ZKSCAN3Q9BRR0 HMGN2P22-201ENST00000427588 175 ntBASIC0.9□□□□□ -2.27
ZKSCAN3Q9BRR0 CYP3A137P-201ENST00000562436 69 ntBASIC0.9□□□□□ -2.27
ZKSCAN3Q9BRR0 SNORA63.6-201ENST00000364921 119 ntBASIC0.89□□□□□ -2.27
ZKSCAN3Q9BRR0 MIR518A1-201ENST00000385068 85 ntBASIC0.89□□□□□ -2.27
ZKSCAN3Q9BRR0 MIR4653-201ENST00000585107 83 ntBASIC0.89□□□□□ -2.27
ZKSCAN3Q9BRR0 MIR6788-201ENST00000618842 66 ntBASIC0.89□□□□□ -2.27
ZKSCAN3Q9BRR0 AC103706.3-201ENST00000636297 85 ntBASIC0.89□□□□□ -2.27
ZKSCAN3Q9BRR0 SNORA2A-201ENST00000383885 135 ntBASIC0.88□□□□□ -2.27
ZKSCAN3Q9BRR0 RNU6-656P-201ENST00000516785 107 ntBASIC0.88□□□□□ -2.27
ZKSCAN3Q9BRR0 Y_RNA.125-201ENST00000363371 111 ntBASIC0.87□□□□□ -2.27
ZKSCAN3Q9BRR0 SNORA15B-2-201ENST00000384058 135 ntBASIC0.87□□□□□ -2.27
ZKSCAN3Q9BRR0 SNORA15B-1-201ENST00000384334 135 ntBASIC0.87□□□□□ -2.27
ZKSCAN3Q9BRR0 MIR521-2-201ENST00000384818 87 ntBASIC0.87□□□□□ -2.27
ZKSCAN3Q9BRR0 RNU6-229P-201ENST00000516614 102 ntBASIC0.87□□□□□ -2.27
ZKSCAN3Q9BRR0 MIR6734-201ENST00000621166 68 ntBASIC0.87□□□□□ -2.27
ZKSCAN3Q9BRR0 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.87□□□□□ -2.27
ZKSCAN3Q9BRR0 Y_RNA.118-201ENST00000363300 101 ntBASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 168.5 ms