Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.63□□□□□ -2.31
ERCC4Q92889 RNU6-1108P-201ENST00000516308 104 ntBASIC0.63□□□□□ -2.31
ERCC4Q92889 NAMPTP3-201ENST00000569273 224 ntBASIC0.63□□□□□ -2.31
ERCC4Q92889 MIR1273G-201ENST00000577677 100 ntBASIC0.63□□□□□ -2.31
ERCC4Q92889 MIR4460-201ENST00000577862 86 ntBASIC0.63□□□□□ -2.31
ERCC4Q92889 MIR6755-201ENST00000619993 66 ntBASIC0.63□□□□□ -2.31
ERCC4Q92889 RNU6-824P-201ENST00000363724 104 ntBASIC0.62□□□□□ -2.31
ERCC4Q92889 Y_RNA.258-201ENST00000364613 105 ntBASIC0.62□□□□□ -2.31
ERCC4Q92889 RNU7-24P-201ENST00000458867 62 ntBASIC0.62□□□□□ -2.31
ERCC4Q92889 Y_RNA.685-201ENST00000516532 108 ntBASIC0.62□□□□□ -2.31
ERCC4Q92889 U6.81-201ENST00000612550 106 ntBASIC0.62□□□□□ -2.31
ERCC4Q92889 MIR5087-201ENST00000635826 76 ntBASIC0.62□□□□□ -2.31
ERCC4Q92889 AC010487.4-201ENST00000637027 61 ntBASIC0.62□□□□□ -2.31
ERCC4Q92889 RNU6-495P-201ENST00000362995 107 ntBASIC0.61□□□□□ -2.31
ERCC4Q92889 RNU6V-201ENST00000384105 107 ntBASIC0.61□□□□□ -2.31
ERCC4Q92889 RNU6-863P-201ENST00000515989 104 ntBASIC0.61□□□□□ -2.31
ERCC4Q92889 SNORD44.1-201ENST00000363202 61 ntBASIC0.6□□□□□ -2.31
ERCC4Q92889 RNU6-1275P-201ENST00000391087 107 ntBASIC0.6□□□□□ -2.31
ERCC4Q92889 RNU6-279P-201ENST00000391297 101 ntBASIC0.6□□□□□ -2.31
ERCC4Q92889 SNORD110-201ENST00000408189 75 ntBASIC0.6□□□□□ -2.31
ERCC4Q92889 MIR1255A-201ENST00000408338 113 ntBASIC0.6□□□□□ -2.31
ERCC4Q92889 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.6□□□□□ -2.31
ERCC4Q92889 RNA5SP436-201ENST00000516020 115 ntBASIC0.6□□□□□ -2.31
ERCC4Q92889 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC0.6□□□□□ -2.31
ERCC4Q92889 YWHAEP2-201ENST00000580066 112 ntBASIC0.6□□□□□ -2.31
ERCC4Q92889 YWHAEP3-201ENST00000582767 121 ntBASIC0.6□□□□□ -2.31
ERCC4Q92889 RNU6-54P-201ENST00000365563 107 ntBASIC0.59□□□□□ -2.31
ERCC4Q92889 AC006210.1-201ENST00000424882 111 ntBASIC0.59□□□□□ -2.31
ERCC4Q92889 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.59□□□□□ -2.31
ERCC4Q92889 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.59□□□□□ -2.32
ERCC4Q92889 RNU6-340P-201ENST00000364005 107 ntBASIC0.58□□□□□ -2.32
ERCC4Q92889 SNORD75.2-201ENST00000408784 58 ntBASIC0.58□□□□□ -2.32
ERCC4Q92889 SNORA68.3-201ENST00000515906 83 ntBASIC0.58□□□□□ -2.32
ERCC4Q92889 MIR924-201ENST00000638017 53 ntBASIC0.58□□□□□ -2.32
ERCC4Q92889 Y_RNA.12-201ENST00000362393 112 ntBASIC0.57□□□□□ -2.32
ERCC4Q92889 Y_RNA.532-201ENST00000384590 113 ntBASIC0.57□□□□□ -2.32
ERCC4Q92889 MIR936-201ENST00000401264 98 ntBASIC0.57□□□□□ -2.32
ERCC4Q92889 AC074348.1-201ENST00000426503 132 ntBASIC0.57□□□□□ -2.32
ERCC4Q92889 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.56□□□□□ -2.32
ERCC4Q92889 SNORA2A-201ENST00000383885 135 ntBASIC0.56□□□□□ -2.32
ERCC4Q92889 HMGN2P22-201ENST00000427588 175 ntBASIC0.56□□□□□ -2.32
ERCC4Q92889 SNORD42B-201ENST00000458893 67 ntBASIC0.56□□□□□ -2.32
ERCC4Q92889 RNU5B-6P-201ENST00000516765 68 ntBASIC0.56□□□□□ -2.32
ERCC4Q92889 RNU6-303P-201ENST00000517091 106 ntBASIC0.56□□□□□ -2.32
ERCC4Q92889 MIRLET7D-201ENST00000362263 87 ntBASIC0.55□□□□□ -2.32
ERCC4Q92889 RNU6-382P-201ENST00000365181 106 ntBASIC0.55□□□□□ -2.32
ERCC4Q92889 Y_RNA.423-201ENST00000384057 113 ntBASIC0.54□□□□□ -2.32
ERCC4Q92889 RNU6-1232P-201ENST00000516299 86 ntBASIC0.54□□□□□ -2.32
ERCC4Q92889 AC243829.3-201ENST00000622177 108 ntBASIC0.54□□□□□ -2.32
ERCC4Q92889 Y_RNA.125-201ENST00000363371 111 ntBASIC0.53□□□□□ -2.32
ERCC4Q92889 RNA5SP457-201ENST00000363657 124 ntBASIC0.53□□□□□ -2.32
ERCC4Q92889 RNU6-857P-201ENST00000515893 110 ntBASIC0.53□□□□□ -2.32
ERCC4Q92889 RNU6-229P-201ENST00000516614 102 ntBASIC0.53□□□□□ -2.32
ERCC4Q92889 RNU6-1094P-201ENST00000362416 104 ntBASIC0.52□□□□□ -2.33
ERCC4Q92889 Y_RNA.371-201ENST00000365591 113 ntBASIC0.52□□□□□ -2.33
ERCC4Q92889 RNA5SP225-201ENST00000410874 135 ntBASIC0.52□□□□□ -2.33
ERCC4Q92889 MIR548AE1-201ENST00000583292 70 ntBASIC0.52□□□□□ -2.33
ERCC4Q92889 U7.6-201ENST00000610841 64 ntBASIC0.52□□□□□ -2.33
ERCC4Q92889 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.52□□□□□ -2.33
ERCC4Q92889 MIR1297-201ENST00000637311 77 ntBASIC0.52□□□□□ -2.33
ERCC4Q92889 MIR103A1-201ENST00000362165 78 ntBASIC0.51□□□□□ -2.33
ERCC4Q92889 RNU6-681P-201ENST00000364012 104 ntBASIC0.51□□□□□ -2.33
ERCC4Q92889 Y_RNA.407-201ENST00000383986 113 ntBASIC0.51□□□□□ -2.33
ERCC4Q92889 RNU6-380P-201ENST00000410207 107 ntBASIC0.51□□□□□ -2.33
ERCC4Q92889 MIR4711-201ENST00000578274 70 ntBASIC0.51□□□□□ -2.33
ERCC4Q92889 SNORA50A-201ENST00000384225 134 ntBASIC0.5□□□□□ -2.33
ERCC4Q92889 RNU6-24P-201ENST00000384440 107 ntBASIC0.5□□□□□ -2.33
ERCC4Q92889 MIR501-201ENST00000390204 84 ntBASIC0.5□□□□□ -2.33
ERCC4Q92889 MIR548AD-201ENST00000584780 82 ntBASIC0.5□□□□□ -2.33
ERCC4Q92889 RNU6-154P-201ENST00000384306 106 ntBASIC0.49□□□□□ -2.33
ERCC4Q92889 MIR760-201ENST00000390220 80 ntBASIC0.49□□□□□ -2.33
ERCC4Q92889 AC114737.2-201ENST00000421583 173 ntBASIC0.49□□□□□ -2.33
ERCC4Q92889 RNU6-752P-201ENST00000516376 102 ntBASIC0.49□□□□□ -2.33
ERCC4Q92889 MIR4473-201ENST00000583731 91 ntBASIC0.49□□□□□ -2.33
ERCC4Q92889 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.49□□□□□ -2.33
ERCC4Q92889 MIR4773-1-201ENST00000637203 78 ntBASIC0.49□□□□□ -2.33
ERCC4Q92889 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.49□□□□□ -2.33
ERCC4Q92889 RNA5SP128-201ENST00000365305 116 ntBASIC0.48□□□□□ -2.33
ERCC4Q92889 RNA5SP193-201ENST00000410353 107 ntBASIC0.48□□□□□ -2.33
ERCC4Q92889 RNU6-274P-201ENST00000459566 107 ntBASIC0.48□□□□□ -2.33
ERCC4Q92889 SNORD114-4-201ENST00000363962 75 ntBASIC0.47□□□□□ -2.33
ERCC4Q92889 RNU6-807P-201ENST00000516805 107 ntBASIC0.47□□□□□ -2.33
ERCC4Q92889 MIR4677-201ENST00000584153 80 ntBASIC0.47□□□□□ -2.33
ERCC4Q92889 AC243829.6-201ENST00000612652 106 ntBASIC0.47□□□□□ -2.33
ERCC4Q92889 MIR8087-201ENST00000612745 78 ntBASIC0.47□□□□□ -2.33
ERCC4Q92889 AC090625.1-201ENST00000357130 210 ntBASIC0.46□□□□□ -2.34
ERCC4Q92889 Y_RNA.115-201ENST00000363272 98 ntBASIC0.46□□□□□ -2.34
ERCC4Q92889 RNU6-1039P-201ENST00000383931 107 ntBASIC0.46□□□□□ -2.34
ERCC4Q92889 MIR652-201ENST00000385278 98 ntBASIC0.46□□□□□ -2.34
ERCC4Q92889 SNORA62.5-201ENST00000516634 120 ntBASIC0.46□□□□□ -2.34
ERCC4Q92889 uc_338.10-201ENST00000621872 182 ntBASIC0.46□□□□□ -2.34
ERCC4Q92889 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.46□□□□□ -2.34
ERCC4Q92889 MIR330-201ENST00000362196 94 ntBASIC0.45□□□□□ -2.34
ERCC4Q92889 SCARNA18B-201ENST00000458806 135 ntBASIC0.45□□□□□ -2.34
ERCC4Q92889 SCARNA17.3-201ENST00000516381 125 ntBASIC0.45□□□□□ -2.34
ERCC4Q92889 SNORA40.17-201ENST00000517256 115 ntBASIC0.44□□□□□ -2.34
ERCC4Q92889 RNU6-330P-201ENST00000363015 107 ntBASIC0.43□□□□□ -2.34
ERCC4Q92889 RNU6-1327P-201ENST00000365302 105 ntBASIC0.43□□□□□ -2.34
ERCC4Q92889 VTRNA1-3-201ENST00000365645 89 ntBASIC0.43□□□□□ -2.34
ERCC4Q92889 AC108740.1-201ENST00000498629 225 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 208.4 ms