Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 RNU7-24P-201ENST00000458867 62 ntBASIC0.21□□□□□ -2.38
CLRN3Q8NCR9 Y_RNA.660-201ENST00000516002 120 ntBASIC0.21□□□□□ -2.38
CLRN3Q8NCR9 AC140658.3-201ENST00000567603 271 ntBASIC0.21□□□□□ -2.38
CLRN3Q8NCR9 MIR6515-201ENST00000619843 57 ntBASIC0.21□□□□□ -2.38
CLRN3Q8NCR9 RNU6-495P-201ENST00000362995 107 ntBASIC0.2□□□□□ -2.38
CLRN3Q8NCR9 SNORD77.2-201ENST00000391045 68 ntBASIC0.2□□□□□ -2.38
CLRN3Q8NCR9 SNORD75.2-201ENST00000408784 58 ntBASIC0.2□□□□□ -2.38
CLRN3Q8NCR9 MIR548AE1-201ENST00000583292 70 ntBASIC0.2□□□□□ -2.38
CLRN3Q8NCR9 MIR4743-201ENST00000584576 69 ntBASIC0.2□□□□□ -2.38
CLRN3Q8NCR9 RNU6-208P-201ENST00000362431 107 ntBASIC0.19□□□□□ -2.38
CLRN3Q8NCR9 MIR643-201ENST00000385267 97 ntBASIC0.19□□□□□ -2.38
CLRN3Q8NCR9 RNU6-624P-201ENST00000363411 107 ntBASIC0.18□□□□□ -2.38
CLRN3Q8NCR9 SNORD114-23-201ENST00000363536 72 ntBASIC0.18□□□□□ -2.38
CLRN3Q8NCR9 MIR598-201ENST00000384868 97 ntBASIC0.18□□□□□ -2.38
CLRN3Q8NCR9 MIR876-201ENST00000401147 81 ntBASIC0.18□□□□□ -2.38
CLRN3Q8NCR9 RNU6-592P-201ENST00000411333 103 ntBASIC0.18□□□□□ -2.38
CLRN3Q8NCR9 SCARNA17.3-201ENST00000516381 125 ntBASIC0.18□□□□□ -2.38
CLRN3Q8NCR9 SCARNA11.2-201ENST00000517183 154 ntBASIC0.18□□□□□ -2.38
CLRN3Q8NCR9 MIR5588-201ENST00000581890 63 ntBASIC0.18□□□□□ -2.38
CLRN3Q8NCR9 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.17□□□□□ -2.38
CLRN3Q8NCR9 MIR20A-201ENST00000362279 71 ntBASIC0.17□□□□□ -2.38
CLRN3Q8NCR9 RNA5SP325-201ENST00000363756 130 ntBASIC0.17□□□□□ -2.38
CLRN3Q8NCR9 RNU6-820P-201ENST00000384273 107 ntBASIC0.17□□□□□ -2.38
CLRN3Q8NCR9 RNA5SP193-201ENST00000410353 107 ntBASIC0.17□□□□□ -2.38
CLRN3Q8NCR9 Y_RNA.607-201ENST00000410597 98 ntBASIC0.17□□□□□ -2.38
CLRN3Q8NCR9 snoU13.17-201ENST00000458802 104 ntBASIC0.17□□□□□ -2.38
CLRN3Q8NCR9 RNU6ATAC17P-201ENST00000516074 71 ntBASIC0.17□□□□□ -2.38
CLRN3Q8NCR9 MIR3925-201ENST00000584674 77 ntBASIC0.17□□□□□ -2.38
CLRN3Q8NCR9 RNA5SP214-201ENST00000363378 118 ntBASIC0.16□□□□□ -2.38
CLRN3Q8NCR9 MIR652-201ENST00000385278 98 ntBASIC0.16□□□□□ -2.38
CLRN3Q8NCR9 AC104408.1-201ENST00000605241 170 ntBASIC0.16□□□□□ -2.38
CLRN3Q8NCR9 MIR494-201ENST00000349529 81 ntBASIC0.15□□□□□ -2.39
CLRN3Q8NCR9 Y_RNA.73-201ENST00000362910 113 ntBASIC0.15□□□□□ -2.39
CLRN3Q8NCR9 RNU6-242P-201ENST00000384359 107 ntBASIC0.15□□□□□ -2.39
CLRN3Q8NCR9 RNU6-557P-201ENST00000516842 110 ntBASIC0.15□□□□□ -2.39
CLRN3Q8NCR9 RNU7-188P-201ENST00000517063 64 ntBASIC0.15□□□□□ -2.39
CLRN3Q8NCR9 RNU6-762P-201ENST00000517107 102 ntBASIC0.15□□□□□ -2.39
CLRN3Q8NCR9 U6.81-201ENST00000612550 106 ntBASIC0.15□□□□□ -2.39
CLRN3Q8NCR9 AC010487.4-201ENST00000637027 61 ntBASIC0.15□□□□□ -2.39
CLRN3Q8NCR9 RNU6-681P-201ENST00000364012 104 ntBASIC0.14□□□□□ -2.39
CLRN3Q8NCR9 Y_RNA.355-201ENST00000365462 98 ntBASIC0.14□□□□□ -2.39
CLRN3Q8NCR9 AC244090.1-201ENST00000441884 93 ntBASIC0.14□□□□□ -2.39
CLRN3Q8NCR9 SNORD42B-201ENST00000458893 67 ntBASIC0.14□□□□□ -2.39
CLRN3Q8NCR9 RNU6-274P-201ENST00000459566 107 ntBASIC0.14□□□□□ -2.39
CLRN3Q8NCR9 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.14□□□□□ -2.39
CLRN3Q8NCR9 RNU6-161P-201ENST00000363051 106 ntBASIC0.13□□□□□ -2.39
CLRN3Q8NCR9 RNU6-824P-201ENST00000363724 104 ntBASIC0.13□□□□□ -2.39
CLRN3Q8NCR9 Y_RNA.258-201ENST00000364613 105 ntBASIC0.13□□□□□ -2.39
CLRN3Q8NCR9 RNU6-979P-201ENST00000383896 107 ntBASIC0.13□□□□□ -2.39
CLRN3Q8NCR9 Y_RNA.606-201ENST00000410579 103 ntBASIC0.13□□□□□ -2.39
CLRN3Q8NCR9 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC0.13□□□□□ -2.39
CLRN3Q8NCR9 AC022137.1-201ENST00000483735 151 ntBASIC0.13□□□□□ -2.39
CLRN3Q8NCR9 RNU6-1108P-201ENST00000516308 104 ntBASIC0.13□□□□□ -2.39
CLRN3Q8NCR9 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.13□□□□□ -2.39
CLRN3Q8NCR9 MIR4773-1-201ENST00000637203 78 ntBASIC0.13□□□□□ -2.39
CLRN3Q8NCR9 SNORD114-9-201ENST00000364370 72 ntBASIC0.12□□□□□ -2.39
CLRN3Q8NCR9 RNU6-382P-201ENST00000365181 106 ntBASIC0.12□□□□□ -2.39
CLRN3Q8NCR9 RNU6-129P-201ENST00000391022 107 ntBASIC0.12□□□□□ -2.39
CLRN3Q8NCR9 SNORD2-201ENST00000459163 69 ntBASIC0.11□□□□□ -2.39
CLRN3Q8NCR9 SNORD114-26-201ENST00000363543 72 ntBASIC0.1□□□□□ -2.39
CLRN3Q8NCR9 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.1□□□□□ -2.39
CLRN3Q8NCR9 MIR1295A-201ENST00000408463 79 ntBASIC0.1□□□□□ -2.39
CLRN3Q8NCR9 RNU6-380P-201ENST00000410207 107 ntBASIC0.1□□□□□ -2.39
CLRN3Q8NCR9 RNU7-171P-201ENST00000459581 62 ntBASIC0.1□□□□□ -2.39
CLRN3Q8NCR9 YWHAEP3-201ENST00000582767 121 ntBASIC0.1□□□□□ -2.39
CLRN3Q8NCR9 MIR924-201ENST00000638017 53 ntBASIC0.1□□□□□ -2.39
CLRN3Q8NCR9 Y_RNA.371-201ENST00000365591 113 ntBASIC0.09□□□□□ -2.4
CLRN3Q8NCR9 MIR593-201ENST00000384856 100 ntBASIC0.09□□□□□ -2.4
CLRN3Q8NCR9 RNA5SP299-201ENST00000391203 116 ntBASIC0.09□□□□□ -2.4
CLRN3Q8NCR9 RNA5SP436-201ENST00000516020 115 ntBASIC0.09□□□□□ -2.4
CLRN3Q8NCR9 RNU6-752P-201ENST00000516376 102 ntBASIC0.09□□□□□ -2.4
CLRN3Q8NCR9 SNORA62.5-201ENST00000516634 120 ntBASIC0.09□□□□□ -2.4
CLRN3Q8NCR9 RN7SL793P-201ENST00000583259 296 ntBASIC0.09□□□□□ -2.4
CLRN3Q8NCR9 Y_RNA.12-201ENST00000362393 112 ntBASIC0.08□□□□□ -2.4
CLRN3Q8NCR9 RNU6-340P-201ENST00000364005 107 ntBASIC0.08□□□□□ -2.4
CLRN3Q8NCR9 RNU6-686P-201ENST00000364839 107 ntBASIC0.08□□□□□ -2.4
CLRN3Q8NCR9 MIR145-201ENST00000384967 88 ntBASIC0.08□□□□□ -2.4
CLRN3Q8NCR9 MIR548H2-201ENST00000408874 88 ntBASIC0.08□□□□□ -2.4
CLRN3Q8NCR9 RNA5SP163-201ENST00000410304 99 ntBASIC0.08□□□□□ -2.4
CLRN3Q8NCR9 RNU7-159P-201ENST00000459284 62 ntBASIC0.07□□□□□ -2.4
CLRN3Q8NCR9 CR383656.4-201ENST00000546909 122 ntBASIC0.07□□□□□ -2.4
CLRN3Q8NCR9 MIR6514-201ENST00000622549 70 ntBASIC0.07□□□□□ -2.4
CLRN3Q8NCR9 SNORD73B-201ENST00000364394 72 ntBASIC0.06□□□□□ -2.4
CLRN3Q8NCR9 RNU6-1276P-201ENST00000365372 104 ntBASIC0.06□□□□□ -2.4
CLRN3Q8NCR9 AL691482.2-201ENST00000457453 84 ntBASIC0.06□□□□□ -2.4
CLRN3Q8NCR9 AC023932.2-201ENST00000603176 175 ntBASIC0.06□□□□□ -2.4
CLRN3Q8NCR9 AC062037.1-201ENST00000605302 128 ntBASIC0.06□□□□□ -2.4
CLRN3Q8NCR9 RN7SL660P-201ENST00000614852 299 ntBASIC0.06□□□□□ -2.4
CLRN3Q8NCR9 MIR148A-201ENST00000362215 68 ntBASIC0.05□□□□□ -2.4
CLRN3Q8NCR9 SNORD114-5-201ENST00000362928 70 ntBASIC0.05□□□□□ -2.4
CLRN3Q8NCR9 RNU6-1039P-201ENST00000383931 107 ntBASIC0.05□□□□□ -2.4
CLRN3Q8NCR9 MIR106A-201ENST00000384870 81 ntBASIC0.05□□□□□ -2.4
CLRN3Q8NCR9 RNU6-180P-201ENST00000516697 61 ntBASIC0.05□□□□□ -2.4
CLRN3Q8NCR9 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.05□□□□□ -2.4
CLRN3Q8NCR9 RNU6-315P-201ENST00000362666 107 ntBASIC0.04□□□□□ -2.4
CLRN3Q8NCR9 MIR193B-201ENST00000384907 83 ntBASIC0.04□□□□□ -2.4
CLRN3Q8NCR9 RNU6-175P-201ENST00000516896 107 ntBASIC0.04□□□□□ -2.4
CLRN3Q8NCR9 MIR6509-201ENST00000614603 85 ntBASIC0.04□□□□□ -2.4
CLRN3Q8NCR9 PVT1_3.1-201ENST00000620853 95 ntBASIC0.04□□□□□ -2.4
CLRN3Q8NCR9 MIRLET7A1-201ENST00000362295 80 ntBASIC0.03□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 171.9 ms