Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNU6-1318P-201ENST00000365389 103 ntBASIC-1.73□□□□□ -2.69
CCDC88AQ3V6T2 RNU7-121P-201ENST00000516604 62 ntBASIC-1.73□□□□□ -2.69
CCDC88AQ3V6T2 RNU6-1153P-201ENST00000516760 105 ntBASIC-1.73□□□□□ -2.69
CCDC88AQ3V6T2 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-1.73□□□□□ -2.69
CCDC88AQ3V6T2 SNORA33.2-201ENST00000365413 134 ntBASIC-1.74□□□□□ -2.69
CCDC88AQ3V6T2 RNU6-1051P-201ENST00000365471 102 ntBASIC-1.74□□□□□ -2.69
CCDC88AQ3V6T2 MIR548A1-201ENST00000385041 97 ntBASIC-1.74□□□□□ -2.69
CCDC88AQ3V6T2 MIR4439-201ENST00000583746 80 ntBASIC-1.74□□□□□ -2.69
CCDC88AQ3V6T2 U6.96-201ENST00000636425 70 ntBASIC-1.75□□□□□ -2.69
CCDC88AQ3V6T2 U6.104-201ENST00000637979 90 ntBASIC-1.75□□□□□ -2.69
CCDC88AQ3V6T2 RNU6-238P-201ENST00000363313 106 ntBASIC-1.75□□□□□ -2.69
CCDC88AQ3V6T2 SNORD18.1-201ENST00000363807 70 ntBASIC-1.75□□□□□ -2.69
CCDC88AQ3V6T2 RNY3P14-201ENST00000384309 102 ntBASIC-1.75□□□□□ -2.69
CCDC88AQ3V6T2 AL353691.2-201ENST00000443795 59 ntBASIC-1.75□□□□□ -2.69
CCDC88AQ3V6T2 SNORD4B-201ENST00000459083 72 ntBASIC-1.75□□□□□ -2.69
CCDC88AQ3V6T2 RNU6-1234P-201ENST00000516877 103 ntBASIC-1.75□□□□□ -2.69
CCDC88AQ3V6T2 MIR8062-201ENST00000621515 85 ntBASIC-1.76□□□□□ -2.69
CCDC88AQ3V6T2 RNU6-228P-201ENST00000362700 106 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 Y_RNA.528-201ENST00000384575 108 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 AL691482.2-201ENST00000457453 84 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 SNORD127-201ENST00000458892 86 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 RNU7-134P-201ENST00000458997 64 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 Y_RNA.163-201ENST00000363702 113 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 RNU4-40P-201ENST00000364351 143 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 RNU6-164P-201ENST00000364604 103 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 U7.5-201ENST00000517224 61 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 RNU6-1014P-201ENST00000383940 103 ntBASIC-1.78□□□□□ -2.69
CCDC88AQ3V6T2 RNU6-80P-201ENST00000384195 107 ntBASIC-1.78□□□□□ -2.69
CCDC88AQ3V6T2 Y_RNA.461-201ENST00000384263 103 ntBASIC-1.79□□□□□ -2.7
CCDC88AQ3V6T2 MIR889-201ENST00000401280 79 ntBASIC-1.79□□□□□ -2.7
CCDC88AQ3V6T2 RNU2-38P-201ENST00000410856 79 ntBASIC-1.79□□□□□ -2.7
CCDC88AQ3V6T2 Y_RNA.778-201ENST00000620203 90 ntBASIC-1.79□□□□□ -2.7
CCDC88AQ3V6T2 MTND4P29-201ENST00000503122 1372 ntBASIC-1.79□□□□□ -2.7
CCDC88AQ3V6T2 RNU6-774P-201ENST00000363238 107 ntBASIC-1.8□□□□□ -2.7
CCDC88AQ3V6T2 Y_RNA.309-201ENST00000365046 111 ntBASIC-1.8□□□□□ -2.7
CCDC88AQ3V6T2 MIR203A-201ENST00000384836 110 ntBASIC-1.8□□□□□ -2.7
CCDC88AQ3V6T2 SNORA7.5-201ENST00000410672 110 ntBASIC-1.8□□□□□ -2.7
CCDC88AQ3V6T2 SNORD63.1-201ENST00000516178 80 ntBASIC-1.8□□□□□ -2.7
CCDC88AQ3V6T2 MIR3140-201ENST00000583685 90 ntBASIC-1.8□□□□□ -2.7
CCDC88AQ3V6T2 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.81□□□□□ -2.7
CCDC88AQ3V6T2 AC018880.2-201ENST00000414265 201 ntBASIC-1.81□□□□□ -2.7
CCDC88AQ3V6T2 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.81□□□□□ -2.7
CCDC88AQ3V6T2 Y_RNA.20-201ENST00000362479 113 ntBASIC-1.82□□□□□ -2.7
CCDC88AQ3V6T2 SNORD45B-201ENST00000364617 72 ntBASIC-1.82□□□□□ -2.7
CCDC88AQ3V6T2 SNORA81.3-201ENST00000517283 198 ntBASIC-1.82□□□□□ -2.7
CCDC88AQ3V6T2 RNU6-151P-201ENST00000364158 107 ntBASIC-1.82□□□□□ -2.7
CCDC88AQ3V6T2 SNORA33.1-201ENST00000364957 130 ntBASIC-1.82□□□□□ -2.7
CCDC88AQ3V6T2 RNU4-61P-201ENST00000411243 107 ntBASIC-1.82□□□□□ -2.7
CCDC88AQ3V6T2 snoU13.17-201ENST00000458802 104 ntBASIC-1.82□□□□□ -2.7
CCDC88AQ3V6T2 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-1.82□□□□□ -2.7
CCDC88AQ3V6T2 RNU6-990P-201ENST00000364385 104 ntBASIC-1.83□□□□□ -2.7
CCDC88AQ3V6T2 Y_RNA.512-201ENST00000384518 102 ntBASIC-1.83□□□□□ -2.7
CCDC88AQ3V6T2 AC020661.2-201ENST00000560114 134 ntBASIC-1.83□□□□□ -2.7
CCDC88AQ3V6T2 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 SNORA2.1-201ENST00000363089 137 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 Y_RNA.138-201ENST00000363462 102 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 RNU6-681P-201ENST00000364012 104 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 RNU6-746P-201ENST00000384112 109 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 Y_RNA.558-201ENST00000384685 113 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 MIR513C-201ENST00000401352 84 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 MIR4679-2-201ENST00000578358 77 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 MIR3139-201ENST00000579145 76 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 AC006254.2-201ENST00000603259 279 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 MIR6502-201ENST00000617296 76 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 RNU2-51P-201ENST00000410708 197 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 Y_RNA.350-201ENST00000365409 98 ntBASIC-1.85□□□□□ -2.71
CCDC88AQ3V6T2 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.86□□□□□ -2.71
CCDC88AQ3V6T2 Y_RNA.396-201ENST00000383949 103 ntBASIC-1.86□□□□□ -2.71
CCDC88AQ3V6T2 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.86□□□□□ -2.71
CCDC88AQ3V6T2 MIR3658-201ENST00000636291 56 ntBASIC-1.86□□□□□ -2.71
CCDC88AQ3V6T2 Y_RNA.356-201ENST00000365475 113 ntBASIC-1.86□□□□□ -2.71
CCDC88AQ3V6T2 RNA5SP292-201ENST00000390974 118 ntBASIC-1.86□□□□□ -2.71
CCDC88AQ3V6T2 Y_RNA.29-201ENST00000362570 113 ntBASIC-1.87□□□□□ -2.71
CCDC88AQ3V6T2 RNU6-1283P-201ENST00000365314 105 ntBASIC-1.87□□□□□ -2.71
CCDC88AQ3V6T2 RNU7-197P-201ENST00000458836 62 ntBASIC-1.87□□□□□ -2.71
CCDC88AQ3V6T2 RNA5SP147-201ENST00000516493 109 ntBASIC-1.87□□□□□ -2.71
CCDC88AQ3V6T2 AP002795.1-201ENST00000534879 84 ntBASIC-1.87□□□□□ -2.71
CCDC88AQ3V6T2 MIR3064-201ENST00000581130 66 ntBASIC-1.87□□□□□ -2.71
CCDC88AQ3V6T2 AP001340.1-201ENST00000624405 217 ntBASIC-1.87□□□□□ -2.71
CCDC88AQ3V6T2 RNU6-639P-201ENST00000384074 107 ntBASIC-1.88□□□□□ -2.71
CCDC88AQ3V6T2 Y_RNA.459-201ENST00000384251 102 ntBASIC-1.88□□□□□ -2.71
CCDC88AQ3V6T2 RNU6-644P-201ENST00000391155 98 ntBASIC-1.88□□□□□ -2.71
CCDC88AQ3V6T2 MIR4694-201ENST00000578534 80 ntBASIC-1.88□□□□□ -2.71
CCDC88AQ3V6T2 MIR3613-201ENST00000579844 87 ntBASIC-1.88□□□□□ -2.71
CCDC88AQ3V6T2 RNU6-1039P-201ENST00000383931 107 ntBASIC-1.88□□□□□ -2.71
CCDC88AQ3V6T2 AL078595.1-201ENST00000404458 226 ntBASIC-1.88□□□□□ -2.71
CCDC88AQ3V6T2 RNU6-1135P-201ENST00000411083 103 ntBASIC-1.88□□□□□ -2.71
CCDC88AQ3V6T2 MIR548Z-201ENST00000584743 97 ntBASIC-1.88□□□□□ -2.71
CCDC88AQ3V6T2 FGF7P7-201ENST00000514120 227 ntBASIC-1.89□□□□□ -2.71
CCDC88AQ3V6T2 RNU6-1333P-201ENST00000516162 93 ntBASIC-1.89□□□□□ -2.71
CCDC88AQ3V6T2 SNORD115-27-201ENST00000364430 82 ntBASIC-1.9□□□□□ -2.71
CCDC88AQ3V6T2 SNORD115-22-201ENST00000364456 82 ntBASIC-1.9□□□□□ -2.71
CCDC88AQ3V6T2 RNU6-382P-201ENST00000365181 106 ntBASIC-1.9□□□□□ -2.71
CCDC88AQ3V6T2 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.9□□□□□ -2.71
CCDC88AQ3V6T2 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.9□□□□□ -2.71
CCDC88AQ3V6T2 RNA5SP26-201ENST00000362406 119 ntBASIC-1.9□□□□□ -2.71
CCDC88AQ3V6T2 RNU5F-1-201ENST00000362507 117 ntBASIC-1.9□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 170.7 ms