Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MIR548I1-201ENST00000408810 149 ntBASIC-1.53□□□□□ -2.65
FOXA3P55318 RNA5SP180-201ENST00000516181 101 ntBASIC-1.53□□□□□ -2.65
FOXA3P55318 RNU6-62P-201ENST00000516526 102 ntBASIC-1.53□□□□□ -2.65
FOXA3P55318 U6atac.1-201ENST00000616025 117 ntBASIC-1.53□□□□□ -2.65
FOXA3P55318 RNU6-918P-201ENST00000391219 106 ntBASIC-1.54□□□□□ -2.66
FOXA3P55318 AC018880.2-201ENST00000414265 201 ntBASIC-1.54□□□□□ -2.66
FOXA3P55318 MTND2P23-201ENST00000422990 651 ntBASIC-1.54□□□□□ -2.66
FOXA3P55318 MIR548AG1-201ENST00000579932 66 ntBASIC-1.54□□□□□ -2.66
FOXA3P55318 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.55□□□□□ -2.66
FOXA3P55318 RNU6-774P-201ENST00000363238 107 ntBASIC-1.55□□□□□ -2.66
FOXA3P55318 RNY4P6-201ENST00000363667 96 ntBASIC-1.55□□□□□ -2.66
FOXA3P55318 RNU6-239P-201ENST00000390990 99 ntBASIC-1.55□□□□□ -2.66
FOXA3P55318 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.55□□□□□ -2.66
FOXA3P55318 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.55□□□□□ -2.66
FOXA3P55318 DNAJC19P2-201ENST00000593340 302 ntBASIC-1.55□□□□□ -2.66
FOXA3P55318 AC103810.7-201ENST00000607821 91 ntBASIC-1.55□□□□□ -2.66
FOXA3P55318 U6.104-201ENST00000637979 90 ntBASIC-1.55□□□□□ -2.66
FOXA3P55318 RNU6-246P-201ENST00000384702 107 ntBASIC-1.56□□□□□ -2.66
FOXA3P55318 RNU6-644P-201ENST00000391155 98 ntBASIC-1.56□□□□□ -2.66
FOXA3P55318 RNU6-460P-201ENST00000391158 108 ntBASIC-1.56□□□□□ -2.66
FOXA3P55318 RNU6-519P-201ENST00000410590 108 ntBASIC-1.56□□□□□ -2.66
FOXA3P55318 MTND3P2-201ENST00000438452 342 ntBASIC-1.56□□□□□ -2.66
FOXA3P55318 AC130289.1-201ENST00000577321 73 ntBASIC-1.56□□□□□ -2.66
FOXA3P55318 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.56□□□□□ -2.66
FOXA3P55318 RNU5F-1-201ENST00000362507 117 ntBASIC-1.57□□□□□ -2.66
FOXA3P55318 RNU6-704P-201ENST00000364162 103 ntBASIC-1.57□□□□□ -2.66
FOXA3P55318 Y_RNA.216-201ENST00000364205 93 ntBASIC-1.57□□□□□ -2.66
FOXA3P55318 RNU6-915P-201ENST00000364943 103 ntBASIC-1.57□□□□□ -2.66
FOXA3P55318 RNA5SP331-201ENST00000364986 107 ntBASIC-1.57□□□□□ -2.66
FOXA3P55318 MIR601-201ENST00000385256 79 ntBASIC-1.57□□□□□ -2.66
FOXA3P55318 AL021921.1-201ENST00000442774 93 ntBASIC-1.57□□□□□ -2.66
FOXA3P55318 RNU6-1219P-201ENST00000516143 112 ntBASIC-1.57□□□□□ -2.66
FOXA3P55318 RNU7-121P-201ENST00000516604 62 ntBASIC-1.57□□□□□ -2.66
FOXA3P55318 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.57□□□□□ -2.66
FOXA3P55318 MIR3613-201ENST00000579844 87 ntBASIC-1.57□□□□□ -2.66
FOXA3P55318 MIR8062-201ENST00000621515 85 ntBASIC-1.57□□□□□ -2.66
FOXA3P55318 RNU6-832P-201ENST00000363319 107 ntBASIC-1.58□□□□□ -2.66
FOXA3P55318 RNU6-1318P-201ENST00000365389 103 ntBASIC-1.58□□□□□ -2.66
FOXA3P55318 Y_RNA.488-201ENST00000384403 102 ntBASIC-1.58□□□□□ -2.66
FOXA3P55318 RNU6-781P-201ENST00000516377 101 ntBASIC-1.58□□□□□ -2.66
FOXA3P55318 MIR4694-201ENST00000578534 80 ntBASIC-1.58□□□□□ -2.66
FOXA3P55318 MIR1246-201ENST00000636535 73 ntBASIC-1.58□□□□□ -2.66
FOXA3P55318 MTND4P29-201ENST00000503122 1372 ntBASIC-1.59□□□□□ -2.66
FOXA3P55318 RNU6-400P-201ENST00000391173 106 ntBASIC-1.59□□□□□ -2.66
FOXA3P55318 RNU6-985P-201ENST00000410182 104 ntBASIC-1.59□□□□□ -2.66
FOXA3P55318 RNU6-635P-201ENST00000516651 102 ntBASIC-1.59□□□□□ -2.66
FOXA3P55318 MIR6739-201ENST00000622461 75 ntBASIC-1.59□□□□□ -2.66
FOXA3P55318 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.6□□□□□ -2.67
FOXA3P55318 Y_RNA.431-201ENST00000384086 102 ntBASIC-1.6□□□□□ -2.67
FOXA3P55318 Y_RNA.467-201ENST00000384297 102 ntBASIC-1.6□□□□□ -2.67
FOXA3P55318 RNU6-813P-201ENST00000384691 107 ntBASIC-1.6□□□□□ -2.67
FOXA3P55318 MIR1285-2-201ENST00000408311 88 ntBASIC-1.6□□□□□ -2.67
FOXA3P55318 RNU2-38P-201ENST00000410856 79 ntBASIC-1.6□□□□□ -2.67
FOXA3P55318 SNORD18.1-201ENST00000363807 70 ntBASIC-1.61□□□□□ -2.67
FOXA3P55318 SNORD115-27-201ENST00000364430 82 ntBASIC-1.61□□□□□ -2.67
FOXA3P55318 RNU4-11P-201ENST00000365287 132 ntBASIC-1.61□□□□□ -2.67
FOXA3P55318 Y_RNA.435-201ENST00000384095 112 ntBASIC-1.61□□□□□ -2.67
FOXA3P55318 MIR487B-201ENST00000385021 84 ntBASIC-1.61□□□□□ -2.67
FOXA3P55318 Y_RNA.700-201ENST00000516806 100 ntBASIC-1.61□□□□□ -2.67
FOXA3P55318 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-1.61□□□□□ -2.67
FOXA3P55318 RNU6-79P-201ENST00000362511 107 ntBASIC-1.62□□□□□ -2.67
FOXA3P55318 RNY3P2-201ENST00000362918 102 ntBASIC-1.62□□□□□ -2.67
FOXA3P55318 Y_RNA.396-201ENST00000383949 103 ntBASIC-1.62□□□□□ -2.67
FOXA3P55318 Y_RNA.426-201ENST00000384068 113 ntBASIC-1.62□□□□□ -2.67
FOXA3P55318 Y_RNA.563-201ENST00000384707 108 ntBASIC-1.62□□□□□ -2.67
FOXA3P55318 RNU7-197P-201ENST00000458836 62 ntBASIC-1.62□□□□□ -2.67
FOXA3P55318 AC022559.1-201ENST00000520905 205 ntBASIC-1.62□□□□□ -2.67
FOXA3P55318 MIR4439-201ENST00000583746 80 ntBASIC-1.62□□□□□ -2.67
FOXA3P55318 U6.81-201ENST00000612550 106 ntBASIC-1.62□□□□□ -2.67
FOXA3P55318 Y_RNA.144-201ENST00000363521 113 ntBASIC-1.63□□□□□ -2.67
FOXA3P55318 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.63□□□□□ -2.67
FOXA3P55318 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.63□□□□□ -2.67
FOXA3P55318 Y_RNA.309-201ENST00000365046 111 ntBASIC-1.63□□□□□ -2.67
FOXA3P55318 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.63□□□□□ -2.67
FOXA3P55318 SNORA33.2-201ENST00000365413 134 ntBASIC-1.63□□□□□ -2.67
FOXA3P55318 RBMX2P4-201ENST00000441256 376 ntBASIC-1.63□□□□□ -2.67
FOXA3P55318 RNU6-1153P-201ENST00000516760 105 ntBASIC-1.63□□□□□ -2.67
FOXA3P55318 MIR365A-201ENST00000362260 87 ntBASIC-1.64□□□□□ -2.67
FOXA3P55318 Y_RNA.95-201ENST00000363079 95 ntBASIC-1.64□□□□□ -2.67
FOXA3P55318 RNU6-478P-201ENST00000363904 110 ntBASIC-1.64□□□□□ -2.67
FOXA3P55318 SNORD45B-201ENST00000364617 72 ntBASIC-1.64□□□□□ -2.67
FOXA3P55318 MTATP8P1-201ENST00000467115 207 ntBASIC-1.64□□□□□ -2.67
FOXA3P55318 AC025166.1-201ENST00000612411 163 ntBASIC-1.64□□□□□ -2.67
FOXA3P55318 AC134503.1-201ENST00000633048 54 ntBASIC-1.64□□□□□ -2.67
FOXA3P55318 Y_RNA.29-201ENST00000362570 113 ntBASIC-1.65□□□□□ -2.67
FOXA3P55318 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.65□□□□□ -2.67
FOXA3P55318 RNU6-1020P-201ENST00000363684 107 ntBASIC-1.65□□□□□ -2.67
FOXA3P55318 Y_RNA.233-201ENST00000364407 101 ntBASIC-1.65□□□□□ -2.67
FOXA3P55318 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.65□□□□□ -2.67
FOXA3P55318 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.65□□□□□ -2.67
FOXA3P55318 RNU6-540P-201ENST00000384622 101 ntBASIC-1.65□□□□□ -2.67
FOXA3P55318 AL158147.1-201ENST00000443970 75 ntBASIC-1.65□□□□□ -2.67
FOXA3P55318 MIR4441-201ENST00000582623 100 ntBASIC-1.65□□□□□ -2.67
FOXA3P55318 MIR3171-201ENST00000584270 74 ntBASIC-1.65□□□□□ -2.67
FOXA3P55318 Y_RNA.138-201ENST00000363462 102 ntBASIC-1.66□□□□□ -2.68
FOXA3P55318 U2.7-201ENST00000619197 100 ntBASIC-1.66□□□□□ -2.68
FOXA3P55318 RNU6-228P-201ENST00000362700 106 ntBASIC-1.67□□□□□ -2.68
FOXA3P55318 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.67□□□□□ -2.68
FOXA3P55318 MIR548C-201ENST00000384815 97 ntBASIC-1.67□□□□□ -2.68
FOXA3P55318 RNU6-630P-201ENST00000391258 106 ntBASIC-1.67□□□□□ -2.68
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms