Protein–RNA interactions for Protein: P48059

LIMS1, LIM and senescent cell antigen-like-containing domain protein 1, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1P48059 MIR18A-201ENST00000362310 71 ntBASIC1.03□□□□□ -2.24
LIMS1P48059 RNU4-45P-201ENST00000365469 141 ntBASIC1.03□□□□□ -2.24
LIMS1P48059 RNU6-260P-201ENST00000384092 107 ntBASIC1.03□□□□□ -2.24
LIMS1P48059 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.03□□□□□ -2.24
LIMS1P48059 MIR4511-201ENST00000582784 87 ntBASIC1.03□□□□□ -2.24
LIMS1P48059 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.03□□□□□ -2.24
LIMS1P48059 SNORA36.1-201ENST00000363424 132 ntBASIC1.02□□□□□ -2.25
LIMS1P48059 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.02□□□□□ -2.25
LIMS1P48059 Y_RNA.540-201ENST00000384638 111 ntBASIC1.02□□□□□ -2.25
LIMS1P48059 MIR203A-201ENST00000384836 110 ntBASIC1.02□□□□□ -2.25
LIMS1P48059 SNORD99-201ENST00000408612 74 ntBASIC1.02□□□□□ -2.25
LIMS1P48059 RNU6-1223P-201ENST00000517124 104 ntBASIC1.02□□□□□ -2.25
LIMS1P48059 AC069503.3-201ENST00000618674 145 ntBASIC1.02□□□□□ -2.25
LIMS1P48059 SNORA2.1-201ENST00000363089 137 ntBASIC1.01□□□□□ -2.25
LIMS1P48059 RNU1-93P-201ENST00000364704 169 ntBASIC1.01□□□□□ -2.25
LIMS1P48059 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.01□□□□□ -2.25
LIMS1P48059 RNA5SP484-201ENST00000458857 111 ntBASIC1.01□□□□□ -2.25
LIMS1P48059 MIR151B-201ENST00000584249 96 ntBASIC1.01□□□□□ -2.25
LIMS1P48059 AC022709.1-201ENST00000615967 87 ntBASIC1.01□□□□□ -2.25
LIMS1P48059 MIR6515-201ENST00000619843 57 ntBASIC1.01□□□□□ -2.25
LIMS1P48059 AC103706.3-201ENST00000636297 85 ntBASIC1.01□□□□□ -2.25
LIMS1P48059 AC011195.1-201ENST00000578177 177 ntBASIC1□□□□□ -2.25
LIMS1P48059 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
LIMS1P48059 RNU6-990P-201ENST00000364385 104 ntBASIC0.99□□□□□ -2.25
LIMS1P48059 AC087343.1-201ENST00000477341 475 ntBASIC0.99□□□□□ -2.25
LIMS1P48059 AC103810.9-201ENST00000606688 112 ntBASIC0.99□□□□□ -2.25
LIMS1P48059 AL109933.3-201ENST00000619095 188 ntBASIC0.99□□□□□ -2.25
LIMS1P48059 SNORD114-26-201ENST00000363543 72 ntBASIC0.98□□□□□ -2.25
LIMS1P48059 RNU6-669P-201ENST00000365575 107 ntBASIC0.98□□□□□ -2.25
LIMS1P48059 MTND4LP1-201ENST00000446263 157 ntBASIC0.98□□□□□ -2.25
LIMS1P48059 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.98□□□□□ -2.25
LIMS1P48059 RNA5SP94-201ENST00000516917 108 ntBASIC0.98□□□□□ -2.25
LIMS1P48059 AC018659.1-201ENST00000551083 169 ntBASIC0.98□□□□□ -2.25
LIMS1P48059 MIR4295-201ENST00000585286 85 ntBASIC0.98□□□□□ -2.25
LIMS1P48059 MIR6788-201ENST00000618842 66 ntBASIC0.98□□□□□ -2.25
LIMS1P48059 MIR6739-201ENST00000622461 75 ntBASIC0.98□□□□□ -2.25
LIMS1P48059 MIR96-201ENST00000362288 78 ntBASIC0.97□□□□□ -2.25
LIMS1P48059 SNORD114-4-201ENST00000363962 75 ntBASIC0.97□□□□□ -2.25
LIMS1P48059 RNU6-645P-201ENST00000364649 106 ntBASIC0.97□□□□□ -2.25
LIMS1P48059 RNU6-1187P-201ENST00000364771 110 ntBASIC0.97□□□□□ -2.25
LIMS1P48059 RNA5SP227-201ENST00000516184 113 ntBASIC0.97□□□□□ -2.25
LIMS1P48059 RNU5B-6P-201ENST00000516765 68 ntBASIC0.97□□□□□ -2.25
LIMS1P48059 RNA5SP268-201ENST00000516828 124 ntBASIC0.97□□□□□ -2.25
LIMS1P48059 AL353765.1-201ENST00000605514 183 ntBASIC0.97□□□□□ -2.25
LIMS1P48059 Y_RNA.250-201ENST00000364542 110 ntBASIC0.96□□□□□ -2.26
LIMS1P48059 Y_RNA.375-201ENST00000365625 101 ntBASIC0.96□□□□□ -2.26
LIMS1P48059 MIR520E-201ENST00000384867 87 ntBASIC0.96□□□□□ -2.26
LIMS1P48059 MIR598-201ENST00000384868 97 ntBASIC0.96□□□□□ -2.26
LIMS1P48059 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.96□□□□□ -2.26
LIMS1P48059 SNORD114-21-201ENST00000606412 72 ntBASIC0.96□□□□□ -2.26
LIMS1P48059 MIR7107-201ENST00000611489 80 ntBASIC0.96□□□□□ -2.26
LIMS1P48059 RNU6-668P-201ENST00000364180 107 ntBASIC0.95□□□□□ -2.26
LIMS1P48059 MIR9-2-201ENST00000384838 87 ntBASIC0.95□□□□□ -2.26
LIMS1P48059 RPS29P1-201ENST00000465274 159 ntBASIC0.95□□□□□ -2.26
LIMS1P48059 RNU6-656P-201ENST00000516785 107 ntBASIC0.95□□□□□ -2.26
LIMS1P48059 AC110620.1-201ENST00000416042 228 ntBASIC0.94□□□□□ -2.26
LIMS1P48059 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.93□□□□□ -2.26
LIMS1P48059 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.92□□□□□ -2.26
LIMS1P48059 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.92□□□□□ -2.26
LIMS1P48059 SNORD114-27-201ENST00000363766 70 ntBASIC0.91□□□□□ -2.26
LIMS1P48059 RNU4-38P-201ENST00000364472 129 ntBASIC0.91□□□□□ -2.26
LIMS1P48059 Y_RNA.407-201ENST00000383986 113 ntBASIC0.91□□□□□ -2.26
LIMS1P48059 MIR548J-201ENST00000408833 112 ntBASIC0.91□□□□□ -2.26
LIMS1P48059 RNU6-542P-201ENST00000516405 103 ntBASIC0.91□□□□□ -2.26
LIMS1P48059 RNA5SP147-201ENST00000516493 109 ntBASIC0.91□□□□□ -2.26
LIMS1P48059 RNU1-29P-201ENST00000606574 126 ntBASIC0.91□□□□□ -2.26
LIMS1P48059 AC006210.1-201ENST00000424882 111 ntBASIC0.9□□□□□ -2.27
LIMS1P48059 Y_RNA.633-201ENST00000459107 95 ntBASIC0.9□□□□□ -2.27
LIMS1P48059 SCARNA17.3-201ENST00000516381 125 ntBASIC0.9□□□□□ -2.27
LIMS1P48059 MIR548AE1-201ENST00000583292 70 ntBASIC0.9□□□□□ -2.27
LIMS1P48059 MIR521-2-201ENST00000384818 87 ntBASIC0.89□□□□□ -2.27
LIMS1P48059 SNORD110-201ENST00000408189 75 ntBASIC0.89□□□□□ -2.27
LIMS1P48059 RNA5SP222-201ENST00000411039 105 ntBASIC0.89□□□□□ -2.27
LIMS1P48059 MIR4661-201ENST00000582720 75 ntBASIC0.89□□□□□ -2.27
LIMS1P48059 AC211469.2-201ENST00000605461 205 ntBASIC0.89□□□□□ -2.27
LIMS1P48059 SNORA70.25-201ENST00000612741 95 ntBASIC0.89□□□□□ -2.27
LIMS1P48059 MIR6857-201ENST00000613267 93 ntBASIC0.89□□□□□ -2.27
LIMS1P48059 PVT1_3.1-201ENST00000620853 95 ntBASIC0.89□□□□□ -2.27
LIMS1P48059 RNA5SP215-201ENST00000363440 122 ntBASIC0.88□□□□□ -2.27
LIMS1P48059 RNY1P8-201ENST00000383970 114 ntBASIC0.88□□□□□ -2.27
LIMS1P48059 MIR652-201ENST00000385278 98 ntBASIC0.88□□□□□ -2.27
LIMS1P48059 MIR6779-201ENST00000617283 64 ntBASIC0.87□□□□□ -2.27
LIMS1P48059 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.87□□□□□ -2.27
LIMS1P48059 RNA5SP517-201ENST00000364724 117 ntBASIC0.86□□□□□ -2.27
LIMS1P48059 MIR582-201ENST00000365731 98 ntBASIC0.86□□□□□ -2.27
LIMS1P48059 RNU6-1162P-201ENST00000384443 104 ntBASIC0.86□□□□□ -2.27
LIMS1P48059 MIR140-201ENST00000385282 100 ntBASIC0.86□□□□□ -2.27
LIMS1P48059 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.86□□□□□ -2.27
LIMS1P48059 AC021146.9-201ENST00000512503 156 ntBASIC0.86□□□□□ -2.27
LIMS1P48059 RNU6-1089P-201ENST00000516473 104 ntBASIC0.86□□□□□ -2.27
LIMS1P48059 MIR5000-201ENST00000577717 103 ntBASIC0.86□□□□□ -2.27
LIMS1P48059 MIR5706-201ENST00000579841 80 ntBASIC0.86□□□□□ -2.27
LIMS1P48059 MIR4473-201ENST00000583731 91 ntBASIC0.86□□□□□ -2.27
LIMS1P48059 SNORA63.6-201ENST00000364921 119 ntBASIC0.85□□□□□ -2.27
LIMS1P48059 MIR548E-201ENST00000408287 88 ntBASIC0.85□□□□□ -2.27
LIMS1P48059 AL157398.1-201ENST00000452981 186 ntBASIC0.85□□□□□ -2.27
LIMS1P48059 SCARNA21.1-201ENST00000515996 128 ntBASIC0.85□□□□□ -2.27
LIMS1P48059 MIR4752-201ENST00000579672 72 ntBASIC0.85□□□□□ -2.27
LIMS1P48059 AC092634.7-201ENST00000621022 103 ntBASIC0.85□□□□□ -2.27
LIMS1P48059 MIR6767-201ENST00000637302 66 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 170.2 ms