Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 MIR3140-201ENST00000583685 90 ntBASIC0.07□□□□□ -2.4
NKX2-1P43699 MIR4473-201ENST00000583731 91 ntBASIC0.07□□□□□ -2.4
NKX2-1P43699 AC104996.3-201ENST00000590718 94 ntBASIC0.07□□□□□ -2.4
NKX2-1P43699 uc_338.10-201ENST00000621872 182 ntBASIC0.07□□□□□ -2.4
NKX2-1P43699 SNORA63.2-201ENST00000362603 126 ntBASIC0.06□□□□□ -2.4
NKX2-1P43699 RNU6-811P-201ENST00000384069 107 ntBASIC0.06□□□□□ -2.4
NKX2-1P43699 AC097510.1-201ENST00000510945 133 ntBASIC0.06□□□□□ -2.4
NKX2-1P43699 Y_RNA.660-201ENST00000516002 120 ntBASIC0.06□□□□□ -2.4
NKX2-1P43699 YWHAEP2-201ENST00000580066 112 ntBASIC0.06□□□□□ -2.4
NKX2-1P43699 RN7SL660P-201ENST00000614852 299 ntBASIC0.06□□□□□ -2.4
NKX2-1P43699 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.06□□□□□ -2.4
NKX2-1P43699 MIR450A1-201ENST00000362262 91 ntBASIC0.05□□□□□ -2.4
NKX2-1P43699 SNORA63.4-201ENST00000362763 126 ntBASIC0.05□□□□□ -2.4
NKX2-1P43699 RNU6-44P-201ENST00000384045 107 ntBASIC0.05□□□□□ -2.4
NKX2-1P43699 RNU6-1184P-201ENST00000384588 108 ntBASIC0.05□□□□□ -2.4
NKX2-1P43699 MIR451A-201ENST00000385059 72 ntBASIC0.05□□□□□ -2.4
NKX2-1P43699 RNA5SP292-201ENST00000390974 118 ntBASIC0.05□□□□□ -2.4
NKX2-1P43699 RNU6-762P-201ENST00000517107 102 ntBASIC0.05□□□□□ -2.4
NKX2-1P43699 Y_RNA.290-201ENST00000364879 114 ntBASIC0.04□□□□□ -2.4
NKX2-1P43699 Y_RNA.407-201ENST00000383986 113 ntBASIC0.04□□□□□ -2.4
NKX2-1P43699 Y_RNA.491-201ENST00000384417 107 ntBASIC0.04□□□□□ -2.4
NKX2-1P43699 MIR145-201ENST00000384967 88 ntBASIC0.04□□□□□ -2.4
NKX2-1P43699 SNORD42B-201ENST00000458893 67 ntBASIC0.04□□□□□ -2.4
NKX2-1P43699 AC026421.1-201ENST00000519101 163 ntBASIC0.04□□□□□ -2.4
NKX2-1P43699 MIR8064-201ENST00000612863 90 ntBASIC0.04□□□□□ -2.4
NKX2-1P43699 AL627230.5-201ENST00000619807 58 ntBASIC0.04□□□□□ -2.4
NKX2-1P43699 MIR1295B-201ENST00000636144 60 ntBASIC0.04□□□□□ -2.4
NKX2-1P43699 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC0.04□□□□□ -2.4
NKX2-1P43699 SNORD114-15-201ENST00000364687 72 ntBASIC0.03□□□□□ -2.4
NKX2-1P43699 RNU6-54P-201ENST00000365563 107 ntBASIC0.03□□□□□ -2.4
NKX2-1P43699 SNORA24B-201ENST00000384176 131 ntBASIC0.03□□□□□ -2.4
NKX2-1P43699 RNU6-929P-201ENST00000384429 107 ntBASIC0.03□□□□□ -2.4
NKX2-1P43699 Y_RNA.495-201ENST00000384435 112 ntBASIC0.03□□□□□ -2.4
NKX2-1P43699 MIR652-201ENST00000385278 98 ntBASIC0.03□□□□□ -2.4
NKX2-1P43699 RNU7-165P-201ENST00000458864 60 ntBASIC0.03□□□□□ -2.4
NKX2-1P43699 RNU7-24P-201ENST00000458867 62 ntBASIC0.03□□□□□ -2.4
NKX2-1P43699 RNU7-153P-201ENST00000516455 62 ntBASIC0.03□□□□□ -2.4
NKX2-1P43699 RNA5SP476-201ENST00000516613 103 ntBASIC0.03□□□□□ -2.4
NKX2-1P43699 RNU6-175P-201ENST00000516896 107 ntBASIC0.03□□□□□ -2.4
NKX2-1P43699 SCARNA11.2-201ENST00000517183 154 ntBASIC0.03□□□□□ -2.4
NKX2-1P43699 MIR4667-201ENST00000578933 66 ntBASIC0.03□□□□□ -2.4
NKX2-1P43699 MIR6718-201ENST00000616153 80 ntBASIC0.03□□□□□ -2.4
NKX2-1P43699 MIR6759-201ENST00000638110 65 ntBASIC0.03□□□□□ -2.4
NKX2-1P43699 MIR582-201ENST00000365731 98 ntBASIC0.02□□□□□ -2.41
NKX2-1P43699 MIR516B1-201ENST00000385211 90 ntBASIC0.02□□□□□ -2.41
NKX2-1P43699 MIR1236-201ENST00000408340 102 ntBASIC0.02□□□□□ -2.41
NKX2-1P43699 snoU13.17-201ENST00000458802 104 ntBASIC0.02□□□□□ -2.41
NKX2-1P43699 AC104692.1-201ENST00000472406 90 ntBASIC0.02□□□□□ -2.41
NKX2-1P43699 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.02□□□□□ -2.41
NKX2-1P43699 MIR5190-201ENST00000581537 80 ntBASIC0.02□□□□□ -2.41
NKX2-1P43699 SNORD114-4-201ENST00000363962 75 ntBASIC0.01□□□□□ -2.41
NKX2-1P43699 SNORD115-27-201ENST00000364430 82 ntBASIC0.01□□□□□ -2.41
NKX2-1P43699 RNU6-1051P-201ENST00000365471 102 ntBASIC0.01□□□□□ -2.41
NKX2-1P43699 Y_RNA.437-201ENST00000384113 113 ntBASIC0.01□□□□□ -2.41
NKX2-1P43699 RNU6-905P-201ENST00000384434 107 ntBASIC0.01□□□□□ -2.41
NKX2-1P43699 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.01□□□□□ -2.41
NKX2-1P43699 RNA5SP163-201ENST00000410304 99 ntBASIC0.01□□□□□ -2.41
NKX2-1P43699 FGF7P7-201ENST00000514120 227 ntBASIC0.01□□□□□ -2.41
NKX2-1P43699 SNORA18.5-201ENST00000516616 101 ntBASIC0.01□□□□□ -2.41
NKX2-1P43699 RNU7-188P-201ENST00000517063 64 ntBASIC0.01□□□□□ -2.41
NKX2-1P43699 CR383656.4-201ENST00000546909 122 ntBASIC0.01□□□□□ -2.41
NKX2-1P43699 AC084368.1-201ENST00000620935 65 ntBASIC0.01□□□□□ -2.41
NKX2-1P43699 MIR148A-201ENST00000362215 68 ntBASIC0□□□□□ -2.41
NKX2-1P43699 RNU6-640P-201ENST00000363693 105 ntBASIC0□□□□□ -2.41
NKX2-1P43699 SNORA32.1-201ENST00000364514 115 ntBASIC0□□□□□ -2.41
NKX2-1P43699 SNORD114-29-201ENST00000364819 70 ntBASIC0□□□□□ -2.41
NKX2-1P43699 MIR604-201ENST00000384880 94 ntBASIC0□□□□□ -2.41
NKX2-1P43699 MALAT1.1-201ENST00000618249 95 ntBASIC0□□□□□ -2.41
NKX2-1P43699 MIR20A-201ENST00000362279 71 ntBASIC-0.01□□□□□ -2.41
NKX2-1P43699 RNU6-495P-201ENST00000362995 107 ntBASIC-0.01□□□□□ -2.41
NKX2-1P43699 RNU6-497P-201ENST00000365316 104 ntBASIC-0.01□□□□□ -2.41
NKX2-1P43699 MIR488-201ENST00000365739 83 ntBASIC-0.01□□□□□ -2.41
NKX2-1P43699 RNY1P7-201ENST00000384743 110 ntBASIC-0.01□□□□□ -2.41
NKX2-1P43699 SNORA49-201ENST00000386157 136 ntBASIC-0.01□□□□□ -2.41
NKX2-1P43699 Y_RNA.609-201ENST00000410669 89 ntBASIC-0.01□□□□□ -2.41
NKX2-1P43699 MTATP6P29-201ENST00000415057 132 ntBASIC-0.01□□□□□ -2.41
NKX2-1P43699 AC244090.1-201ENST00000441884 93 ntBASIC-0.01□□□□□ -2.41
NKX2-1P43699 RNU6-267P-201ENST00000516714 103 ntBASIC-0.01□□□□□ -2.41
NKX2-1P43699 SNORA40.17-201ENST00000517256 115 ntBASIC-0.01□□□□□ -2.41
NKX2-1P43699 MIR4802-201ENST00000581881 80 ntBASIC-0.01□□□□□ -2.41
NKX2-1P43699 MIR6507-201ENST00000613630 70 ntBASIC-0.01□□□□□ -2.41
NKX2-1P43699 RNU6-633P-201ENST00000362612 103 ntBASIC-0.02□□□□□ -2.41
NKX2-1P43699 RNU4-32P-201ENST00000363404 141 ntBASIC-0.02□□□□□ -2.41
NKX2-1P43699 RNU6-990P-201ENST00000364385 104 ntBASIC-0.02□□□□□ -2.41
NKX2-1P43699 RNU6-153P-201ENST00000364422 104 ntBASIC-0.02□□□□□ -2.41
NKX2-1P43699 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-0.02□□□□□ -2.41
NKX2-1P43699 AP001180.6-201ENST00000584918 159 ntBASIC-0.02□□□□□ -2.41
NKX2-1P43699 AC145423.2-201ENST00000610631 239 ntBASIC-0.02□□□□□ -2.41
NKX2-1P43699 MIR655-201ENST00000362159 97 ntBASIC-0.03□□□□□ -2.41
NKX2-1P43699 Y_RNA.81-201ENST00000362997 102 ntBASIC-0.03□□□□□ -2.41
NKX2-1P43699 RNU6-154P-201ENST00000384306 106 ntBASIC-0.03□□□□□ -2.41
NKX2-1P43699 MIR224-201ENST00000384889 81 ntBASIC-0.03□□□□□ -2.41
NKX2-1P43699 RPS29P8-201ENST00000445109 171 ntBASIC-0.03□□□□□ -2.41
NKX2-1P43699 snoU13.13-201ENST00000458842 104 ntBASIC-0.03□□□□□ -2.41
NKX2-1P43699 SNORD2-201ENST00000459163 69 ntBASIC-0.03□□□□□ -2.41
NKX2-1P43699 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.03□□□□□ -2.41
NKX2-1P43699 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.03□□□□□ -2.41
NKX2-1P43699 MIR6514-201ENST00000622549 70 ntBASIC-0.03□□□□□ -2.41
NKX2-1P43699 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.04□□□□□ -2.42
NKX2-1P43699 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.04□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 240.8 ms