Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RNU6-111P-201ENST00000517179 105 ntBASIC-1.16□□□□□ -2.6
COL18A1P39060 AC062037.2-201ENST00000610137 73 ntBASIC-1.16□□□□□ -2.6
COL18A1P39060 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.17□□□□□ -2.6
COL18A1P39060 SNORA63.6-201ENST00000364921 119 ntBASIC-1.17□□□□□ -2.6
COL18A1P39060 MIR147A-201ENST00000385079 72 ntBASIC-1.17□□□□□ -2.6
COL18A1P39060 MIR513C-201ENST00000401352 84 ntBASIC-1.17□□□□□ -2.6
COL18A1P39060 MIR8485-201ENST00000401372 91 ntBASIC-1.17□□□□□ -2.6
COL18A1P39060 MIR1302-3-201ENST00000408128 138 ntBASIC-1.17□□□□□ -2.6
COL18A1P39060 FGF7P7-201ENST00000514120 227 ntBASIC-1.17□□□□□ -2.6
COL18A1P39060 MIRLET7F1-201ENST00000362202 87 ntBASIC-1.18□□□□□ -2.6
COL18A1P39060 SNORD115-23-201ENST00000364461 82 ntBASIC-1.18□□□□□ -2.6
COL18A1P39060 RNU6-915P-201ENST00000364943 103 ntBASIC-1.18□□□□□ -2.6
COL18A1P39060 Y_RNA.344-201ENST00000365381 112 ntBASIC-1.18□□□□□ -2.6
COL18A1P39060 AC022559.1-201ENST00000520905 205 ntBASIC-1.18□□□□□ -2.6
COL18A1P39060 MIR606-201ENST00000384851 96 ntBASIC-1.19□□□□□ -2.6
COL18A1P39060 RNU6-816P-201ENST00000390914 107 ntBASIC-1.19□□□□□ -2.6
COL18A1P39060 RNU6-1268P-201ENST00000391214 107 ntBASIC-1.19□□□□□ -2.6
COL18A1P39060 RNU6-1239P-201ENST00000391310 107 ntBASIC-1.19□□□□□ -2.6
COL18A1P39060 RNU6-1234P-201ENST00000516877 103 ntBASIC-1.19□□□□□ -2.6
COL18A1P39060 RNU6-980P-201ENST00000516925 103 ntBASIC-1.19□□□□□ -2.6
COL18A1P39060 AP001340.1-201ENST00000624405 217 ntBASIC-1.19□□□□□ -2.6
COL18A1P39060 RNU6-208P-201ENST00000362431 107 ntBASIC-1.19□□□□□ -2.6
COL18A1P39060 SNORA63.2-201ENST00000362603 126 ntBASIC-1.19□□□□□ -2.6
COL18A1P39060 RNU4-11P-201ENST00000365287 132 ntBASIC-1.19□□□□□ -2.6
COL18A1P39060 Y_RNA.377-201ENST00000365644 108 ntBASIC-1.19□□□□□ -2.6
COL18A1P39060 MIR548U-201ENST00000390728 81 ntBASIC-1.19□□□□□ -2.6
COL18A1P39060 RNU6-797P-201ENST00000363101 109 ntBASIC-1.2□□□□□ -2.6
COL18A1P39060 Y_RNA.441-201ENST00000384123 112 ntBASIC-1.2□□□□□ -2.6
COL18A1P39060 RNU6-460P-201ENST00000391158 108 ntBASIC-1.2□□□□□ -2.6
COL18A1P39060 RNU7-197P-201ENST00000458836 62 ntBASIC-1.2□□□□□ -2.6
COL18A1P39060 RNU7-24P-201ENST00000458867 62 ntBASIC-1.2□□□□□ -2.6
COL18A1P39060 snoU83B.1-201ENST00000517136 88 ntBASIC-1.2□□□□□ -2.6
COL18A1P39060 U6.96-201ENST00000636425 70 ntBASIC-1.2□□□□□ -2.6
COL18A1P39060 Y_RNA.459-201ENST00000384251 102 ntBASIC-1.21□□□□□ -2.6
COL18A1P39060 AC025521.1-201ENST00000621624 286 ntBASIC-1.21□□□□□ -2.6
COL18A1P39060 Y_RNA.11-201ENST00000362375 109 ntBASIC-1.21□□□□□ -2.6
COL18A1P39060 Y_RNA.240-201ENST00000364469 95 ntBASIC-1.21□□□□□ -2.6
COL18A1P39060 Y_RNA.272-201ENST00000364696 102 ntBASIC-1.21□□□□□ -2.6
COL18A1P39060 SNORD114-17-201ENST00000364699 75 ntBASIC-1.21□□□□□ -2.6
COL18A1P39060 RNU6-151P-201ENST00000364158 107 ntBASIC-1.22□□□□□ -2.6
COL18A1P39060 RNU6-1177P-201ENST00000391058 104 ntBASIC-1.22□□□□□ -2.6
COL18A1P39060 Y_RNA.662-201ENST00000516028 97 ntBASIC-1.22□□□□□ -2.6
COL18A1P39060 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.22□□□□□ -2.6
COL18A1P39060 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.23□□□□□ -2.61
COL18A1P39060 Y_RNA.566-201ENST00000384735 101 ntBASIC-1.23□□□□□ -2.61
COL18A1P39060 Y_RNA.668-201ENST00000516233 93 ntBASIC-1.23□□□□□ -2.61
COL18A1P39060 SNORD18.1-201ENST00000363807 70 ntBASIC-1.24□□□□□ -2.61
COL18A1P39060 Y_RNA.309-201ENST00000365046 111 ntBASIC-1.24□□□□□ -2.61
COL18A1P39060 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.24□□□□□ -2.61
COL18A1P39060 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.24□□□□□ -2.61
COL18A1P39060 MIR577-201ENST00000385196 96 ntBASIC-1.24□□□□□ -2.61
COL18A1P39060 RNU6-1153P-201ENST00000516760 105 ntBASIC-1.24□□□□□ -2.61
COL18A1P39060 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-1.24□□□□□ -2.61
COL18A1P39060 AC068339.1-201ENST00000526965 141 ntBASIC-1.24□□□□□ -2.61
COL18A1P39060 AL513043.2-201ENST00000573941 143 ntBASIC-1.24□□□□□ -2.61
COL18A1P39060 MIR4439-201ENST00000583746 80 ntBASIC-1.24□□□□□ -2.61
COL18A1P39060 AC132825.6-201ENST00000638861 357 ntBASIC-1.24□□□□□ -2.61
COL18A1P39060 AL158147.1-201ENST00000443970 75 ntBASIC-1.24□□□□□ -2.61
COL18A1P39060 RNU7-85P-201ENST00000458851 63 ntBASIC-1.24□□□□□ -2.61
COL18A1P39060 Y_RNA.680-201ENST00000516441 93 ntBASIC-1.24□□□□□ -2.61
COL18A1P39060 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.24□□□□□ -2.61
COL18A1P39060 RNU6-738P-201ENST00000384531 106 ntBASIC-1.25□□□□□ -2.61
COL18A1P39060 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.25□□□□□ -2.61
COL18A1P39060 Y_RNA.633-201ENST00000459107 95 ntBASIC-1.25□□□□□ -2.61
COL18A1P39060 AC025166.1-201ENST00000612411 163 ntBASIC-1.25□□□□□ -2.61
COL18A1P39060 RNU6-924P-201ENST00000362926 108 ntBASIC-1.26□□□□□ -2.61
COL18A1P39060 MTCYBP9-201ENST00000431021 303 ntBASIC-1.26□□□□□ -2.61
COL18A1P39060 MIR4520-1-201ENST00000582609 70 ntBASIC-1.26□□□□□ -2.61
COL18A1P39060 MIR3140-201ENST00000583685 90 ntBASIC-1.26□□□□□ -2.61
COL18A1P39060 AC141273.2-201ENST00000618989 130 ntBASIC-1.26□□□□□ -2.61
COL18A1P39060 RNU6-832P-201ENST00000363319 107 ntBASIC-1.26□□□□□ -2.61
COL18A1P39060 RNU6-260P-201ENST00000384092 107 ntBASIC-1.26□□□□□ -2.61
COL18A1P39060 SNORD75.2-201ENST00000408784 58 ntBASIC-1.26□□□□□ -2.61
COL18A1P39060 MIR4694-201ENST00000578534 80 ntBASIC-1.26□□□□□ -2.61
COL18A1P39060 RNU6-132P-201ENST00000383863 107 ntBASIC-1.27□□□□□ -2.61
COL18A1P39060 RNU6-644P-201ENST00000391155 98 ntBASIC-1.27□□□□□ -2.61
COL18A1P39060 MTATP6P29-201ENST00000415057 132 ntBASIC-1.27□□□□□ -2.61
COL18A1P39060 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-1.27□□□□□ -2.61
COL18A1P39060 MIR548Z-201ENST00000584743 97 ntBASIC-1.27□□□□□ -2.61
COL18A1P39060 AL353803.5-201ENST00000599815 141 ntBASIC-1.27□□□□□ -2.61
COL18A1P39060 RNU6-1051P-201ENST00000365471 102 ntBASIC-1.28□□□□□ -2.61
COL18A1P39060 MIR548A1-201ENST00000385041 97 ntBASIC-1.28□□□□□ -2.61
COL18A1P39060 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.28□□□□□ -2.61
COL18A1P39060 Y_RNA.426-201ENST00000384068 113 ntBASIC-1.29□□□□□ -2.62
COL18A1P39060 Y_RNA.491-201ENST00000384417 107 ntBASIC-1.29□□□□□ -2.62
COL18A1P39060 RNU6-781P-201ENST00000516377 101 ntBASIC-1.29□□□□□ -2.62
COL18A1P39060 RNU6-62P-201ENST00000516526 102 ntBASIC-1.29□□□□□ -2.62
COL18A1P39060 AP001094.1-201ENST00000579805 193 ntBASIC-1.29□□□□□ -2.62
COL18A1P39060 AC006254.2-201ENST00000603259 279 ntBASIC-1.29□□□□□ -2.62
COL18A1P39060 Y_RNA.812-201ENST00000610788 101 ntBASIC-1.29□□□□□ -2.62
COL18A1P39060 Y_RNA.784-201ENST00000613803 101 ntBASIC-1.29□□□□□ -2.62
COL18A1P39060 Y_RNA.787-201ENST00000616522 101 ntBASIC-1.29□□□□□ -2.62
COL18A1P39060 Y_RNA.780-201ENST00000617336 101 ntBASIC-1.29□□□□□ -2.62
COL18A1P39060 Y_RNA.801-201ENST00000619005 101 ntBASIC-1.29□□□□□ -2.62
COL18A1P39060 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.29□□□□□ -2.62
COL18A1P39060 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.29□□□□□ -2.62
COL18A1P39060 MIR568-201ENST00000385036 95 ntBASIC-1.29□□□□□ -2.62
COL18A1P39060 Y_RNA.580-201ENST00000391004 95 ntBASIC-1.29□□□□□ -2.62
COL18A1P39060 AL117351.2-201ENST00000513571 157 ntBASIC-1.29□□□□□ -2.62
COL18A1P39060 RNU6-861P-201ENST00000516745 106 ntBASIC-1.29□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 223.7 ms