Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AL603825.1-201ENST00000438481 80 ntBASIC3.36□□□□□ -1.87
MSH5O43196 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
MSH5O43196 RNU6-361P-201ENST00000364454 107 ntBASIC3.35□□□□□ -1.87
MSH5O43196 SNORA70.25-201ENST00000612741 95 ntBASIC3.35□□□□□ -1.87
MSH5O43196 Y_RNA.134-201ENST00000363435 105 ntBASIC3.34□□□□□ -1.87
MSH5O43196 SNORA3A-201ENST00000364113 130 ntBASIC3.34□□□□□ -1.87
MSH5O43196 RN7SKP223-201ENST00000410582 62 ntBASIC3.34□□□□□ -1.87
MSH5O43196 RNA5SP247-201ENST00000411181 105 ntBASIC3.34□□□□□ -1.87
MSH5O43196 HMGN2P22-201ENST00000427588 175 ntBASIC3.34□□□□□ -1.87
MSH5O43196 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.34□□□□□ -1.87
MSH5O43196 RNA5SP82-201ENST00000516707 92 ntBASIC3.34□□□□□ -1.87
MSH5O43196 MIR4781-201ENST00000585250 76 ntBASIC3.34□□□□□ -1.87
MSH5O43196 MIR27B-201ENST00000385129 97 ntBASIC3.33□□□□□ -1.88
MSH5O43196 RN7SKP88-201ENST00000516847 250 ntBASIC3.33□□□□□ -1.88
MSH5O43196 7SK.8-201ENST00000612110 250 ntBASIC3.33□□□□□ -1.88
MSH5O43196 7SK.13-201ENST00000622040 250 ntBASIC3.33□□□□□ -1.88
MSH5O43196 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
MSH5O43196 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
MSH5O43196 RNU6-910P-201ENST00000390844 107 ntBASIC3.32□□□□□ -1.88
MSH5O43196 Y_RNA.699-201ENST00000516803 93 ntBASIC3.32□□□□□ -1.88
MSH5O43196 MIR6828-201ENST00000636181 60 ntBASIC3.32□□□□□ -1.88
MSH5O43196 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
MSH5O43196 SNORA27.2-201ENST00000363365 126 ntBASIC3.31□□□□□ -1.88
MSH5O43196 snoU13.9-201ENST00000458927 103 ntBASIC3.31□□□□□ -1.88
MSH5O43196 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
MSH5O43196 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
MSH5O43196 RNA5SP67-201ENST00000516422 131 ntBASIC3.3□□□□□ -1.88
MSH5O43196 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
MSH5O43196 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
MSH5O43196 SNORA67.1-201ENST00000364749 141 ntBASIC3.29□□□□□ -1.88
MSH5O43196 AC104408.1-201ENST00000605241 170 ntBASIC3.29□□□□□ -1.88
MSH5O43196 AL353997.5-201ENST00000618886 171 ntBASIC3.29□□□□□ -1.88
MSH5O43196 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.29□□□□□ -1.88
MSH5O43196 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
MSH5O43196 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
MSH5O43196 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC3.28□□□□□ -1.88
MSH5O43196 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
MSH5O43196 SNORD114-29-201ENST00000364819 70 ntBASIC3.27□□□□□ -1.89
MSH5O43196 5S_rRNA.2-201ENST00000391293 112 ntBASIC3.27□□□□□ -1.89
MSH5O43196 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
MSH5O43196 SNORD33-201ENST00000362761 85 ntBASIC3.26□□□□□ -1.89
MSH5O43196 Y_RNA.164-201ENST00000363709 102 ntBASIC3.26□□□□□ -1.89
MSH5O43196 AC079804.2-201ENST00000490376 200 ntBASIC3.26□□□□□ -1.89
MSH5O43196 RNA5SP458-201ENST00000516188 119 ntBASIC3.26□□□□□ -1.89
MSH5O43196 RNA5SP282-201ENST00000516355 108 ntBASIC3.26□□□□□ -1.89
MSH5O43196 RNU6-1238P-201ENST00000517215 102 ntBASIC3.26□□□□□ -1.89
MSH5O43196 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
MSH5O43196 SNORD79.1-201ENST00000516069 84 ntBASIC3.25□□□□□ -1.89
MSH5O43196 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC3.24□□□□□ -1.89
MSH5O43196 Y_RNA.382-201ENST00000365672 114 ntBASIC3.24□□□□□ -1.89
MSH5O43196 MIR520D-201ENST00000385002 87 ntBASIC3.24□□□□□ -1.89
MSH5O43196 SNORA17.4-201ENST00000391287 132 ntBASIC3.24□□□□□ -1.89
MSH5O43196 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
MSH5O43196 SNORD56.5-201ENST00000364281 72 ntBASIC3.23□□□□□ -1.89
MSH5O43196 SNORD115-23-201ENST00000364461 82 ntBASIC3.23□□□□□ -1.89
MSH5O43196 AL356320.1-201ENST00000429616 163 ntBASIC3.23□□□□□ -1.89
MSH5O43196 MIR6888-201ENST00000621977 67 ntBASIC3.23□□□□□ -1.89
MSH5O43196 AC084768.2-201ENST00000622736 221 ntBASIC3.23□□□□□ -1.89
MSH5O43196 SNORD114-1-201ENST00000362705 72 ntBASIC3.22□□□□□ -1.89
MSH5O43196 RNU6ATAC8P-201ENST00000408460 126 ntBASIC3.22□□□□□ -1.89
MSH5O43196 RNY3P8-201ENST00000411366 126 ntBASIC3.22□□□□□ -1.89
MSH5O43196 RNU7-188P-201ENST00000517063 64 ntBASIC3.22□□□□□ -1.89
MSH5O43196 RNU6-176P-201ENST00000517196 105 ntBASIC3.22□□□□□ -1.89
MSH5O43196 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
MSH5O43196 RNU1-40P-201ENST00000516816 164 ntBASIC3.21□□□□□ -1.9
MSH5O43196 RNU1-97P-201ENST00000516872 164 ntBASIC3.21□□□□□ -1.9
MSH5O43196 MIR1273D-201ENST00000577266 86 ntBASIC3.21□□□□□ -1.9
MSH5O43196 MIR4752-201ENST00000579672 72 ntBASIC3.21□□□□□ -1.9
MSH5O43196 AP000553.5-201ENST00000641933 54 ntBASIC3.21□□□□□ -1.9
MSH5O43196 Y_RNA.338-201ENST00000365320 114 ntBASIC3.2□□□□□ -1.9
MSH5O43196 MIR6873-201ENST00000622788 63 ntBASIC3.2□□□□□ -1.9
MSH5O43196 RNU6-1036P-201ENST00000383959 104 ntBASIC3.19□□□□□ -1.9
MSH5O43196 RNU6-175P-201ENST00000516896 107 ntBASIC3.19□□□□□ -1.9
MSH5O43196 MIR3612-201ENST00000579753 87 ntBASIC3.19□□□□□ -1.9
MSH5O43196 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
MSH5O43196 MIR21-201ENST00000362134 72 ntBASIC3.18□□□□□ -1.9
MSH5O43196 MIR221-201ENST00000385135 110 ntBASIC3.18□□□□□ -1.9
MSH5O43196 SNORD105-201ENST00000386910 85 ntBASIC3.18□□□□□ -1.9
MSH5O43196 RNA5SP169-201ENST00000517268 117 ntBASIC3.18□□□□□ -1.9
MSH5O43196 RNA5SP393-201ENST00000363423 117 ntBASIC3.17□□□□□ -1.9
MSH5O43196 MIR548Q-201ENST00000408404 100 ntBASIC3.17□□□□□ -1.9
MSH5O43196 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC3.17□□□□□ -1.9
MSH5O43196 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
MSH5O43196 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
MSH5O43196 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC3.16□□□□□ -1.9
MSH5O43196 MIR4464-201ENST00000580818 92 ntBASIC3.16□□□□□ -1.9
MSH5O43196 MIR4713-201ENST00000582691 75 ntBASIC3.16□□□□□ -1.9
MSH5O43196 AC046143.2-201ENST00000609789 160 ntBASIC3.16□□□□□ -1.9
MSH5O43196 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC3.16□□□□□ -1.9
MSH5O43196 RNA5SP268-201ENST00000516828 124 ntBASIC3.15□□□□□ -1.91
MSH5O43196 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
MSH5O43196 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
MSH5O43196 SNORA36.1-201ENST00000363424 132 ntBASIC3.14□□□□□ -1.91
MSH5O43196 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC3.14□□□□□ -1.91
MSH5O43196 TP73-AS1.1-201ENST00000611447 161 ntBASIC3.12□□□□□ -1.91
MSH5O43196 MIR7107-201ENST00000611489 80 ntBASIC3.12□□□□□ -1.91
MSH5O43196 AL445584.3-201ENST00000617173 78 ntBASIC3.12□□□□□ -1.91
MSH5O43196 MIR7111-201ENST00000619751 72 ntBASIC3.12□□□□□ -1.91
MSH5O43196 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC3.12□□□□□ -1.91
MSH5O43196 MIR643-201ENST00000385267 97 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 203.3 ms