Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 RNU1-29P-201ENST00000606574 126 ntBASIC0.77□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 MIR664A-201ENST00000626086 82 ntBASIC0.77□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 SNORA8.1-201ENST00000384250 140 ntBASIC0.76□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 MIR508-201ENST00000384857 115 ntBASIC0.76□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 MIR518A1-201ENST00000385068 85 ntBASIC0.76□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 SNORD71-201ENST00000411292 86 ntBASIC0.76□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 RNU4-54P-201ENST00000516428 129 ntBASIC0.76□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.224-201ENST00000364308 111 ntBASIC0.75□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.226-201ENST00000364337 114 ntBASIC0.75□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 RNU6-70P-201ENST00000516438 60 ntBASIC0.75□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.681-201ENST00000516445 113 ntBASIC0.75□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.74□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 AL691482.2-201ENST00000457453 84 ntBASIC0.74□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 RNU6-752P-201ENST00000516376 102 ntBASIC0.74□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 MIR4714-201ENST00000580728 77 ntBASIC0.74□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 MIR3675-201ENST00000583661 73 ntBASIC0.74□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 RNU6-1039P-201ENST00000383931 107 ntBASIC0.73□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 RNU6-411P-201ENST00000384451 107 ntBASIC0.73□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 MIR4653-201ENST00000585107 83 ntBASIC0.73□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 MIR6788-201ENST00000618842 66 ntBASIC0.73□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.72□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.72□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.72□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 RNU6-945P-201ENST00000383947 107 ntBASIC0.71□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.545-201ENST00000384652 105 ntBASIC0.71□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.565-201ENST00000384719 101 ntBASIC0.71□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 MIR1287-201ENST00000408492 90 ntBASIC0.71□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 AC098934.3-201ENST00000430450 190 ntBASIC0.71□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 RNU6-523P-201ENST00000516304 54 ntBASIC0.71□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 MIR4473-201ENST00000583731 91 ntBASIC0.71□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 MIR6509-201ENST00000614603 85 ntBASIC0.71□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.407-201ENST00000383986 113 ntBASIC0.7□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.423-201ENST00000384057 113 ntBASIC0.7□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 MIR5706-201ENST00000579841 80 ntBASIC0.7□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 MIR548AE1-201ENST00000583292 70 ntBASIC0.7□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 MIR203A-201ENST00000384836 110 ntBASIC0.69□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 HMGN2P22-201ENST00000427588 175 ntBASIC0.69□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.69□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 SNORD114-4-201ENST00000363962 75 ntBASIC0.68□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 RNU6-687P-201ENST00000516443 89 ntBASIC0.68□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 RNU6-1015P-201ENST00000517121 99 ntBASIC0.68□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 MIR151B-201ENST00000584249 96 ntBASIC0.68□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 MIR6755-201ENST00000619993 66 ntBASIC0.68□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 RNA5SP499-201ENST00000363982 119 ntBASIC0.67□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 RNU6-990P-201ENST00000364385 104 ntBASIC0.67□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 SNORA2A-201ENST00000383885 135 ntBASIC0.67□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 RNU6-587P-201ENST00000391282 106 ntBASIC0.67□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 RNA5SP247-201ENST00000411181 105 ntBASIC0.67□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 RNU6-1241P-201ENST00000384536 107 ntBASIC0.66□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 MIR652-201ENST00000385278 98 ntBASIC0.66□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 RNU6-1232P-201ENST00000516299 86 ntBASIC0.66□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 RNU6-229P-201ENST00000516614 102 ntBASIC0.66□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 MIR5000-201ENST00000577717 103 ntBASIC0.66□□□□□ -2.3
NPHP3-ACAD11A0A0J9YXS1 SNORD45.1-201ENST00000363181 77 ntBASIC0.65□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 RNU6-260P-201ENST00000384092 107 ntBASIC0.65□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 RNA5SP436-201ENST00000516020 115 ntBASIC0.65□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 MIR3657-201ENST00000584818 117 ntBASIC0.65□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 SCARNA17.3-201ENST00000516381 125 ntBASIC0.64□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 SNORD44.1-201ENST00000363202 61 ntBASIC0.63□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.125-201ENST00000363371 111 ntBASIC0.63□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 MIR154-201ENST00000385243 84 ntBASIC0.63□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 RNU6-848P-201ENST00000515948 107 ntBASIC0.63□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 RNU6-617P-201ENST00000516147 107 ntBASIC0.63□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 RNU6-473P-201ENST00000516164 107 ntBASIC0.63□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 RNU6-1049P-201ENST00000516414 107 ntBASIC0.63□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 SNORA40.17-201ENST00000517256 115 ntBASIC0.63□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 uc_338.10-201ENST00000621872 182 ntBASIC0.63□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.63□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 RNU6-604P-201ENST00000390917 100 ntBASIC0.62□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 SNORA68.3-201ENST00000515906 83 ntBASIC0.62□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 U7.6-201ENST00000610841 64 ntBASIC0.62□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 MIR92A1-201ENST00000385233 78 ntBASIC0.61□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 MIR760-201ENST00000390220 80 ntBASIC0.61□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.61□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 RNU6-863P-201ENST00000515989 104 ntBASIC0.61□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 RNA5SP121-201ENST00000516537 101 ntBASIC0.61□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 SNORD115-22-201ENST00000364456 82 ntBASIC0.6□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 MIR7-2-201ENST00000384970 110 ntBASIC0.6□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 MIR501-201ENST00000390204 84 ntBASIC0.6□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 RNA5SP147-201ENST00000516493 109 ntBASIC0.6□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 RNU6-1223P-201ENST00000517124 104 ntBASIC0.6□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 MIR8053-201ENST00000613344 75 ntBASIC0.6□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 SNORA2.1-201ENST00000363089 137 ntBASIC0.59□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 SNORD115-31-201ENST00000365318 82 ntBASIC0.59□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 SNORD45A-201ENST00000384512 84 ntBASIC0.59□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.59□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 AL157398.1-201ENST00000452981 186 ntBASIC0.59□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 RNU6-634P-201ENST00000459134 106 ntBASIC0.59□□□□□ -2.31
NPHP3-ACAD11A0A0J9YXS1 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.58□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 MIR103A1-201ENST00000362165 78 ntBASIC0.57□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 MIR582-201ENST00000365731 98 ntBASIC0.57□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 RNU6-871P-201ENST00000516122 100 ntBASIC0.57□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 MIR4677-201ENST00000584153 80 ntBASIC0.57□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 uc_338.17-201ENST00000619633 179 ntBASIC0.57□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 MIRLET7D-201ENST00000362263 87 ntBASIC0.56□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 RNA5SP128-201ENST00000365305 116 ntBASIC0.56□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 MIR516B1-201ENST00000385211 90 ntBASIC0.56□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.56□□□□□ -2.32
NPHP3-ACAD11A0A0J9YXS1 MIR548AD-201ENST00000584780 82 ntBASIC0.56□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 185.1 ms