Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 MIR4422-201ENST00000581938 83 ntBASIC1.96□□□□□ -2.1
PCDHB3Q9Y5E6 MIR548L-201ENST00000408303 86 ntBASIC1.95□□□□□ -2.1
PCDHB3Q9Y5E6 RNA5SP182-201ENST00000516064 82 ntBASIC1.95□□□□□ -2.1
PCDHB3Q9Y5E6 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.95□□□□□ -2.1
PCDHB3Q9Y5E6 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC1.95□□□□□ -2.1
PCDHB3Q9Y5E6 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.94□□□□□ -2.1
PCDHB3Q9Y5E6 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.94□□□□□ -2.1
PCDHB3Q9Y5E6 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
PCDHB3Q9Y5E6 RNU6-1312P-201ENST00000362425 108 ntBASIC1.93□□□□□ -2.1
PCDHB3Q9Y5E6 SNORD114-4-201ENST00000363962 75 ntBASIC1.93□□□□□ -2.1
PCDHB3Q9Y5E6 RNU1-141P-201ENST00000364623 158 ntBASIC1.93□□□□□ -2.1
PCDHB3Q9Y5E6 AL603825.1-201ENST00000438481 80 ntBASIC1.93□□□□□ -2.1
PCDHB3Q9Y5E6 snoU13.13-201ENST00000458842 104 ntBASIC1.93□□□□□ -2.1
PCDHB3Q9Y5E6 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.92□□□□□ -2.1
PCDHB3Q9Y5E6 RNU6-726P-201ENST00000364680 107 ntBASIC1.92□□□□□ -2.1
PCDHB3Q9Y5E6 RNU6-469P-201ENST00000516253 101 ntBASIC1.92□□□□□ -2.1
PCDHB3Q9Y5E6 RNU5B-6P-201ENST00000516765 68 ntBASIC1.91□□□□□ -2.1
PCDHB3Q9Y5E6 Y_RNA.783-201ENST00000613546 102 ntBASIC1.91□□□□□ -2.1
PCDHB3Q9Y5E6 MIR517B-201ENST00000385102 67 ntBASIC1.9□□□□□ -2.11
PCDHB3Q9Y5E6 SNORD113-2-201ENST00000391082 72 ntBASIC1.9□□□□□ -2.11
PCDHB3Q9Y5E6 RNU7-174P-201ENST00000516248 59 ntBASIC1.9□□□□□ -2.11
PCDHB3Q9Y5E6 Y_RNA.676-201ENST00000516393 96 ntBASIC1.9□□□□□ -2.11
PCDHB3Q9Y5E6 SNORA70.22-201ENST00000517160 124 ntBASIC1.9□□□□□ -2.11
PCDHB3Q9Y5E6 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.9□□□□□ -2.11
PCDHB3Q9Y5E6 RNU6-698P-201ENST00000363523 107 ntBASIC1.89□□□□□ -2.11
PCDHB3Q9Y5E6 RNU6-34P-201ENST00000364874 107 ntBASIC1.89□□□□□ -2.11
PCDHB3Q9Y5E6 U2.7-201ENST00000619197 100 ntBASIC1.89□□□□□ -2.11
PCDHB3Q9Y5E6 SNORD18A-201ENST00000363753 72 ntBASIC1.88□□□□□ -2.11
PCDHB3Q9Y5E6 Y_RNA.338-201ENST00000365320 114 ntBASIC1.88□□□□□ -2.11
PCDHB3Q9Y5E6 RNU6-716P-201ENST00000365621 103 ntBASIC1.88□□□□□ -2.11
PCDHB3Q9Y5E6 SNORD12-201ENST00000391002 90 ntBASIC1.88□□□□□ -2.11
PCDHB3Q9Y5E6 AC021146.9-201ENST00000512503 156 ntBASIC1.88□□□□□ -2.11
PCDHB3Q9Y5E6 RNA5SP47-201ENST00000517230 109 ntBASIC1.88□□□□□ -2.11
PCDHB3Q9Y5E6 AC012493.3-201ENST00000604494 112 ntBASIC1.88□□□□□ -2.11
PCDHB3Q9Y5E6 MIR6845-201ENST00000613182 61 ntBASIC1.88□□□□□ -2.11
PCDHB3Q9Y5E6 U4.4-201ENST00000620626 117 ntBASIC1.88□□□□□ -2.11
PCDHB3Q9Y5E6 RNU6-269P-201ENST00000391077 97 ntBASIC1.87□□□□□ -2.11
PCDHB3Q9Y5E6 RNU4-88P-201ENST00000411220 86 ntBASIC1.87□□□□□ -2.11
PCDHB3Q9Y5E6 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.87□□□□□ -2.11
PCDHB3Q9Y5E6 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.87□□□□□ -2.11
PCDHB3Q9Y5E6 RNU1-17P-201ENST00000363022 152 ntBASIC1.86□□□□□ -2.11
PCDHB3Q9Y5E6 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.85□□□□□ -2.11
PCDHB3Q9Y5E6 SNORA8.2-201ENST00000384372 139 ntBASIC1.85□□□□□ -2.11
PCDHB3Q9Y5E6 RNU6-520P-201ENST00000384717 104 ntBASIC1.85□□□□□ -2.11
PCDHB3Q9Y5E6 AC002429.1-201ENST00000437672 148 ntBASIC1.85□□□□□ -2.11
PCDHB3Q9Y5E6 RNA5SP484-201ENST00000458857 111 ntBASIC1.85□□□□□ -2.11
PCDHB3Q9Y5E6 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC1.85□□□□□ -2.11
PCDHB3Q9Y5E6 Y_RNA.633-201ENST00000459107 95 ntBASIC1.84□□□□□ -2.11
PCDHB3Q9Y5E6 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
PCDHB3Q9Y5E6 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
PCDHB3Q9Y5E6 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
PCDHB3Q9Y5E6 SNORA33.1-201ENST00000364957 130 ntBASIC1.83□□□□□ -2.12
PCDHB3Q9Y5E6 Y_RNA.379-201ENST00000365653 102 ntBASIC1.83□□□□□ -2.12
PCDHB3Q9Y5E6 SNORA15B-2-201ENST00000384058 135 ntBASIC1.83□□□□□ -2.12
PCDHB3Q9Y5E6 SNORA15B-1-201ENST00000384334 135 ntBASIC1.83□□□□□ -2.12
PCDHB3Q9Y5E6 SNORD89-201ENST00000390981 114 ntBASIC1.83□□□□□ -2.12
PCDHB3Q9Y5E6 MIR4285-201ENST00000581001 85 ntBASIC1.83□□□□□ -2.12
PCDHB3Q9Y5E6 MIR548AD-201ENST00000584780 82 ntBASIC1.83□□□□□ -2.12
PCDHB3Q9Y5E6 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
PCDHB3Q9Y5E6 Y_RNA.125-201ENST00000363371 111 ntBASIC1.82□□□□□ -2.12
PCDHB3Q9Y5E6 MIR222-201ENST00000384992 110 ntBASIC1.82□□□□□ -2.12
PCDHB3Q9Y5E6 RNU6-1110P-201ENST00000516462 101 ntBASIC1.82□□□□□ -2.12
PCDHB3Q9Y5E6 SNORA25.15-201ENST00000516487 89 ntBASIC1.82□□□□□ -2.12
PCDHB3Q9Y5E6 uc_338.10-201ENST00000621872 182 ntBASIC1.82□□□□□ -2.12
PCDHB3Q9Y5E6 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
PCDHB3Q9Y5E6 SNORD105-201ENST00000386910 85 ntBASIC1.81□□□□□ -2.12
PCDHB3Q9Y5E6 MIR758-201ENST00000390227 88 ntBASIC1.81□□□□□ -2.12
PCDHB3Q9Y5E6 RNU1-92P-201ENST00000517017 135 ntBASIC1.81□□□□□ -2.12
PCDHB3Q9Y5E6 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.81□□□□□ -2.12
PCDHB3Q9Y5E6 MIR3678-201ENST00000578455 94 ntBASIC1.81□□□□□ -2.12
PCDHB3Q9Y5E6 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.81□□□□□ -2.12
PCDHB3Q9Y5E6 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
PCDHB3Q9Y5E6 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.8□□□□□ -2.12
PCDHB3Q9Y5E6 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
PCDHB3Q9Y5E6 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
PCDHB3Q9Y5E6 SCARNA16.5-201ENST00000517114 183 ntBASIC1.79□□□□□ -2.12
PCDHB3Q9Y5E6 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
PCDHB3Q9Y5E6 SNORA63.6-201ENST00000364921 119 ntBASIC1.78□□□□□ -2.12
PCDHB3Q9Y5E6 SCARNA17.3-201ENST00000516381 125 ntBASIC1.78□□□□□ -2.12
PCDHB3Q9Y5E6 MIR3122-201ENST00000577243 73 ntBASIC1.78□□□□□ -2.12
PCDHB3Q9Y5E6 Y_RNA.164-201ENST00000363709 102 ntBASIC1.77□□□□□ -2.13
PCDHB3Q9Y5E6 SNORA16.1-201ENST00000364597 132 ntBASIC1.77□□□□□ -2.13
PCDHB3Q9Y5E6 RNU6-1053P-201ENST00000515930 101 ntBASIC1.77□□□□□ -2.13
PCDHB3Q9Y5E6 AL162376.1-201ENST00000624117 175 ntBASIC1.77□□□□□ -2.13
PCDHB3Q9Y5E6 RNU6-753P-201ENST00000363926 107 ntBASIC1.76□□□□□ -2.13
PCDHB3Q9Y5E6 RNA5SP190-201ENST00000365222 118 ntBASIC1.76□□□□□ -2.13
PCDHB3Q9Y5E6 SNORA41B-201ENST00000384785 128 ntBASIC1.76□□□□□ -2.13
PCDHB3Q9Y5E6 MIR652-201ENST00000385278 98 ntBASIC1.76□□□□□ -2.13
PCDHB3Q9Y5E6 U7.7-201ENST00000459276 60 ntBASIC1.76□□□□□ -2.13
PCDHB3Q9Y5E6 MIR4498-201ENST00000577599 66 ntBASIC1.76□□□□□ -2.13
PCDHB3Q9Y5E6 MIR378A-201ENST00000362177 66 ntBASIC1.75□□□□□ -2.13
PCDHB3Q9Y5E6 Y_RNA.407-201ENST00000383986 113 ntBASIC1.75□□□□□ -2.13
PCDHB3Q9Y5E6 MIR573-201ENST00000384964 99 ntBASIC1.75□□□□□ -2.13
PCDHB3Q9Y5E6 MIR517C-201ENST00000385103 95 ntBASIC1.75□□□□□ -2.13
PCDHB3Q9Y5E6 RNA5SP247-201ENST00000411181 105 ntBASIC1.75□□□□□ -2.13
PCDHB3Q9Y5E6 AC108667.1-201ENST00000428618 249 ntBASIC1.75□□□□□ -2.13
PCDHB3Q9Y5E6 MIR3612-201ENST00000579753 87 ntBASIC1.75□□□□□ -2.13
PCDHB3Q9Y5E6 AC084768.2-201ENST00000622736 221 ntBASIC1.75□□□□□ -2.13
PCDHB3Q9Y5E6 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
PCDHB3Q9Y5E6 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 134.1 ms