Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC104996.3-201ENST00000590718 94 ntBASIC1.03□□□□□ -2.24
CCDC9Q9Y3X0 MIR6866-201ENST00000638146 69 ntBASIC1.03□□□□□ -2.24
CCDC9Q9Y3X0 RNU6-1094P-201ENST00000362416 104 ntBASIC1.02□□□□□ -2.25
CCDC9Q9Y3X0 RNU6-957P-201ENST00000363652 99 ntBASIC1.02□□□□□ -2.25
CCDC9Q9Y3X0 RNU6-478P-201ENST00000363904 110 ntBASIC1.02□□□□□ -2.25
CCDC9Q9Y3X0 AC092628.1-201ENST00000436250 252 ntBASIC1.02□□□□□ -2.25
CCDC9Q9Y3X0 RNU7-195P-201ENST00000458793 62 ntBASIC1.02□□□□□ -2.25
CCDC9Q9Y3X0 FGF7P7-201ENST00000514120 227 ntBASIC1.02□□□□□ -2.25
CCDC9Q9Y3X0 Y_RNA.809-201ENST00000516058 95 ntBASIC1.02□□□□□ -2.25
CCDC9Q9Y3X0 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.02□□□□□ -2.25
CCDC9Q9Y3X0 RNA5SP347-201ENST00000362445 119 ntBASIC1.01□□□□□ -2.25
CCDC9Q9Y3X0 SNORA63.2-201ENST00000362603 126 ntBASIC1.01□□□□□ -2.25
CCDC9Q9Y3X0 RNU6-1260P-201ENST00000362944 107 ntBASIC1.01□□□□□ -2.25
CCDC9Q9Y3X0 RNU6-132P-201ENST00000383863 107 ntBASIC1.01□□□□□ -2.25
CCDC9Q9Y3X0 Y_RNA.491-201ENST00000384417 107 ntBASIC1.01□□□□□ -2.25
CCDC9Q9Y3X0 RNU6-535P-201ENST00000384722 107 ntBASIC1.01□□□□□ -2.25
CCDC9Q9Y3X0 RNU6-380P-201ENST00000410207 107 ntBASIC1.01□□□□□ -2.25
CCDC9Q9Y3X0 Y_RNA.660-201ENST00000516002 120 ntBASIC1.01□□□□□ -2.25
CCDC9Q9Y3X0 AC145423.2-201ENST00000610631 239 ntBASIC1.01□□□□□ -2.25
CCDC9Q9Y3X0 RNU6-686P-201ENST00000364839 107 ntBASIC1□□□□□ -2.25
CCDC9Q9Y3X0 AC073261.1-201ENST00000429409 121 ntBASIC1□□□□□ -2.25
CCDC9Q9Y3X0 AC097635.1-201ENST00000450678 155 ntBASIC1□□□□□ -2.25
CCDC9Q9Y3X0 U7.4-201ENST00000614961 63 ntBASIC1□□□□□ -2.25
CCDC9Q9Y3X0 TRDV1-202ENST00000621643 102 ntBASIC1□□□□□ -2.25
CCDC9Q9Y3X0 AC243829.3-201ENST00000622177 108 ntBASIC1□□□□□ -2.25
CCDC9Q9Y3X0 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
CCDC9Q9Y3X0 MIRLET7F1-201ENST00000362202 87 ntBASIC0.99□□□□□ -2.25
CCDC9Q9Y3X0 MIRLET7A1-201ENST00000362295 80 ntBASIC0.99□□□□□ -2.25
CCDC9Q9Y3X0 SNORD114-2-201ENST00000363953 78 ntBASIC0.99□□□□□ -2.25
CCDC9Q9Y3X0 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
CCDC9Q9Y3X0 MIR889-201ENST00000401280 79 ntBASIC0.99□□□□□ -2.25
CCDC9Q9Y3X0 AC138869.1-201ENST00000568623 124 ntBASIC0.99□□□□□ -2.25
CCDC9Q9Y3X0 RNU6-161P-201ENST00000363051 106 ntBASIC0.98□□□□□ -2.25
CCDC9Q9Y3X0 RNU6-1229P-201ENST00000364295 107 ntBASIC0.98□□□□□ -2.25
CCDC9Q9Y3X0 RNU6-945P-201ENST00000383947 107 ntBASIC0.98□□□□□ -2.25
CCDC9Q9Y3X0 RNU6-291P-201ENST00000384720 107 ntBASIC0.98□□□□□ -2.25
CCDC9Q9Y3X0 AC018659.1-201ENST00000551083 169 ntBASIC0.98□□□□□ -2.25
CCDC9Q9Y3X0 MIR3678-201ENST00000578455 94 ntBASIC0.98□□□□□ -2.25
CCDC9Q9Y3X0 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.98□□□□□ -2.25
CCDC9Q9Y3X0 uc_338.16-201ENST00000621804 95 ntBASIC0.98□□□□□ -2.25
CCDC9Q9Y3X0 Y_RNA.239-201ENST00000364444 113 ntBASIC0.97□□□□□ -2.25
CCDC9Q9Y3X0 Y_RNA.264-201ENST00000364665 102 ntBASIC0.97□□□□□ -2.25
CCDC9Q9Y3X0 MIR599-201ENST00000385069 95 ntBASIC0.97□□□□□ -2.25
CCDC9Q9Y3X0 SNORD77.2-201ENST00000391045 68 ntBASIC0.97□□□□□ -2.25
CCDC9Q9Y3X0 RNU6-1108P-201ENST00000516308 104 ntBASIC0.97□□□□□ -2.25
CCDC9Q9Y3X0 RNU6-135P-201ENST00000516769 101 ntBASIC0.97□□□□□ -2.25
CCDC9Q9Y3X0 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.97□□□□□ -2.25
CCDC9Q9Y3X0 Y_RNA.32-201ENST00000362589 110 ntBASIC0.96□□□□□ -2.26
CCDC9Q9Y3X0 AC098934.3-201ENST00000430450 190 ntBASIC0.96□□□□□ -2.26
CCDC9Q9Y3X0 RNU4-54P-201ENST00000516428 129 ntBASIC0.96□□□□□ -2.26
CCDC9Q9Y3X0 FAS-AS1.1-201ENST00000615327 126 ntBASIC0.96□□□□□ -2.26
CCDC9Q9Y3X0 AC092634.7-201ENST00000621022 103 ntBASIC0.96□□□□□ -2.26
CCDC9Q9Y3X0 RNU6-664P-201ENST00000362381 107 ntBASIC0.95□□□□□ -2.26
CCDC9Q9Y3X0 RNU6-208P-201ENST00000362431 107 ntBASIC0.95□□□□□ -2.26
CCDC9Q9Y3X0 SNORD101-201ENST00000384027 73 ntBASIC0.95□□□□□ -2.26
CCDC9Q9Y3X0 Y_RNA.565-201ENST00000384719 101 ntBASIC0.95□□□□□ -2.26
CCDC9Q9Y3X0 HAR1A.1-201ENST00000459583 118 ntBASIC0.95□□□□□ -2.26
CCDC9Q9Y3X0 SNORA31.14-201ENST00000516728 116 ntBASIC0.95□□□□□ -2.26
CCDC9Q9Y3X0 U6.100-201ENST00000636230 99 ntBASIC0.95□□□□□ -2.26
CCDC9Q9Y3X0 RNY4P3-201ENST00000365254 95 ntBASIC0.94□□□□□ -2.26
CCDC9Q9Y3X0 RNU6-1051P-201ENST00000365471 102 ntBASIC0.94□□□□□ -2.26
CCDC9Q9Y3X0 RNU6-35P-201ENST00000384530 107 ntBASIC0.94□□□□□ -2.26
CCDC9Q9Y3X0 Y_RNA.545-201ENST00000384652 105 ntBASIC0.94□□□□□ -2.26
CCDC9Q9Y3X0 Y_RNA.596-201ENST00000410462 109 ntBASIC0.94□□□□□ -2.26
CCDC9Q9Y3X0 RNU6-351P-201ENST00000516097 100 ntBASIC0.94□□□□□ -2.26
CCDC9Q9Y3X0 RNU6-807P-201ENST00000516805 107 ntBASIC0.94□□□□□ -2.26
CCDC9Q9Y3X0 MIR4696-201ENST00000581431 70 ntBASIC0.94□□□□□ -2.26
CCDC9Q9Y3X0 MTRNR2L2-201ENST00000604882 87 ntBASIC0.94□□□□□ -2.26
CCDC9Q9Y3X0 RNU5F-1-201ENST00000362507 117 ntBASIC0.93□□□□□ -2.26
CCDC9Q9Y3X0 RNA5SP245-201ENST00000364239 121 ntBASIC0.93□□□□□ -2.26
CCDC9Q9Y3X0 MIR644A-201ENST00000385262 94 ntBASIC0.93□□□□□ -2.26
CCDC9Q9Y3X0 SNORD90-201ENST00000391145 111 ntBASIC0.93□□□□□ -2.26
CCDC9Q9Y3X0 AC244505.6-201ENST00000452829 130 ntBASIC0.93□□□□□ -2.26
CCDC9Q9Y3X0 RNU6-1265P-201ENST00000516342 103 ntBASIC0.93□□□□□ -2.26
CCDC9Q9Y3X0 RNA5SP94-201ENST00000516917 108 ntBASIC0.93□□□□□ -2.26
CCDC9Q9Y3X0 MIR1297-201ENST00000637311 77 ntBASIC0.93□□□□□ -2.26
CCDC9Q9Y3X0 RNU6-229P-201ENST00000516614 102 ntBASIC0.92□□□□□ -2.26
CCDC9Q9Y3X0 RNU6-935P-201ENST00000410371 100 ntBASIC0.91□□□□□ -2.26
CCDC9Q9Y3X0 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.91□□□□□ -2.26
CCDC9Q9Y3X0 SCARNA18B-201ENST00000458806 135 ntBASIC0.91□□□□□ -2.26
CCDC9Q9Y3X0 RNU6-303P-201ENST00000517091 106 ntBASIC0.91□□□□□ -2.26
CCDC9Q9Y3X0 YWHAEP2-201ENST00000580066 112 ntBASIC0.91□□□□□ -2.26
CCDC9Q9Y3X0 YWHAEP3-201ENST00000582767 121 ntBASIC0.91□□□□□ -2.26
CCDC9Q9Y3X0 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.91□□□□□ -2.26
CCDC9Q9Y3X0 Y_RNA.788-201ENST00000622394 112 ntBASIC0.91□□□□□ -2.26
CCDC9Q9Y3X0 MIR5087-201ENST00000635826 76 ntBASIC0.91□□□□□ -2.26
CCDC9Q9Y3X0 Y_RNA.12-201ENST00000362393 112 ntBASIC0.9□□□□□ -2.27
CCDC9Q9Y3X0 Y_RNA.207-201ENST00000364142 106 ntBASIC0.9□□□□□ -2.27
CCDC9Q9Y3X0 Y_RNA.532-201ENST00000384590 113 ntBASIC0.9□□□□□ -2.27
CCDC9Q9Y3X0 AC139453.2-201ENST00000487255 133 ntBASIC0.9□□□□□ -2.27
CCDC9Q9Y3X0 SNORD115-44-201ENST00000365391 82 ntBASIC0.89□□□□□ -2.27
CCDC9Q9Y3X0 RNU6-411P-201ENST00000384451 107 ntBASIC0.89□□□□□ -2.27
CCDC9Q9Y3X0 SNORD71-201ENST00000411292 86 ntBASIC0.89□□□□□ -2.27
CCDC9Q9Y3X0 AC074348.1-201ENST00000426503 132 ntBASIC0.89□□□□□ -2.27
CCDC9Q9Y3X0 snoU13.17-201ENST00000458802 104 ntBASIC0.89□□□□□ -2.27
CCDC9Q9Y3X0 RNU6-1057P-201ENST00000517162 102 ntBASIC0.89□□□□□ -2.27
CCDC9Q9Y3X0 MIR3134-201ENST00000579433 74 ntBASIC0.89□□□□□ -2.27
CCDC9Q9Y3X0 MIR4484-201ENST00000582855 83 ntBASIC0.89□□□□□ -2.27
CCDC9Q9Y3X0 MIR451A-201ENST00000385059 72 ntBASIC0.88□□□□□ -2.27
CCDC9Q9Y3X0 RNU6-523P-201ENST00000516304 54 ntBASIC0.88□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 233.5 ms