Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AL109933.3-201ENST00000619095 188 ntBASIC0.63□□□□□ -2.31
LIMCH1Q9UPQ0 MIR548BB-201ENST00000626714 66 ntBASIC0.63□□□□□ -2.31
LIMCH1Q9UPQ0 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.62□□□□□ -2.31
LIMCH1Q9UPQ0 SNORD118-201ENST00000363593 134 ntBASIC0.62□□□□□ -2.31
LIMCH1Q9UPQ0 SNORD115-37-201ENST00000363768 82 ntBASIC0.62□□□□□ -2.31
LIMCH1Q9UPQ0 MIR617-201ENST00000385030 97 ntBASIC0.62□□□□□ -2.31
LIMCH1Q9UPQ0 MIR518A1-201ENST00000385068 85 ntBASIC0.62□□□□□ -2.31
LIMCH1Q9UPQ0 MIR1302-4-201ENST00000408701 150 ntBASIC0.62□□□□□ -2.31
LIMCH1Q9UPQ0 AL157398.1-201ENST00000452981 186 ntBASIC0.62□□□□□ -2.31
LIMCH1Q9UPQ0 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.62□□□□□ -2.31
LIMCH1Q9UPQ0 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.62□□□□□ -2.31
LIMCH1Q9UPQ0 MIR494-201ENST00000349529 81 ntBASIC0.61□□□□□ -2.31
LIMCH1Q9UPQ0 RNU6-716P-201ENST00000365621 103 ntBASIC0.61□□□□□ -2.31
LIMCH1Q9UPQ0 RNU6-1126P-201ENST00000384002 107 ntBASIC0.61□□□□□ -2.31
LIMCH1Q9UPQ0 RNA5SP292-201ENST00000390974 118 ntBASIC0.61□□□□□ -2.31
LIMCH1Q9UPQ0 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
LIMCH1Q9UPQ0 MIR936-201ENST00000401264 98 ntBASIC0.61□□□□□ -2.31
LIMCH1Q9UPQ0 RNU6-935P-201ENST00000410371 100 ntBASIC0.61□□□□□ -2.31
LIMCH1Q9UPQ0 Y_RNA.611-201ENST00000410682 108 ntBASIC0.61□□□□□ -2.31
LIMCH1Q9UPQ0 RNU7-153P-201ENST00000516455 62 ntBASIC0.61□□□□□ -2.31
LIMCH1Q9UPQ0 RNA5SP395-201ENST00000516567 118 ntBASIC0.61□□□□□ -2.31
LIMCH1Q9UPQ0 RNU6-1057P-201ENST00000517162 102 ntBASIC0.61□□□□□ -2.31
LIMCH1Q9UPQ0 MIR8087-201ENST00000612745 78 ntBASIC0.61□□□□□ -2.31
LIMCH1Q9UPQ0 RNA5SP62-201ENST00000363457 110 ntBASIC0.6□□□□□ -2.31
LIMCH1Q9UPQ0 RNA5SP499-201ENST00000363982 119 ntBASIC0.6□□□□□ -2.31
LIMCH1Q9UPQ0 MIR2113-201ENST00000459007 91 ntBASIC0.6□□□□□ -2.31
LIMCH1Q9UPQ0 RNU6-863P-201ENST00000515989 104 ntBASIC0.6□□□□□ -2.31
LIMCH1Q9UPQ0 MIR4796-201ENST00000580742 81 ntBASIC0.6□□□□□ -2.31
LIMCH1Q9UPQ0 MIR548AG2-201ENST00000581228 64 ntBASIC0.6□□□□□ -2.31
LIMCH1Q9UPQ0 AC062037.1-201ENST00000605302 128 ntBASIC0.6□□□□□ -2.31
LIMCH1Q9UPQ0 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.31
LIMCH1Q9UPQ0 Y_RNA.426-201ENST00000384068 113 ntBASIC0.59□□□□□ -2.31
LIMCH1Q9UPQ0 SNORA26.2-201ENST00000390922 122 ntBASIC0.59□□□□□ -2.31
LIMCH1Q9UPQ0 U3.27-201ENST00000391237 200 ntBASIC0.59□□□□□ -2.31
LIMCH1Q9UPQ0 RNY4P29-201ENST00000410801 97 ntBASIC0.59□□□□□ -2.31
LIMCH1Q9UPQ0 MIR7107-201ENST00000611489 80 ntBASIC0.59□□□□□ -2.31
LIMCH1Q9UPQ0 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.59□□□□□ -2.31
LIMCH1Q9UPQ0 MIR330-201ENST00000362196 94 ntBASIC0.58□□□□□ -2.32
LIMCH1Q9UPQ0 Y_RNA.258-201ENST00000364613 105 ntBASIC0.58□□□□□ -2.32
LIMCH1Q9UPQ0 RNY4P3-201ENST00000365254 95 ntBASIC0.58□□□□□ -2.32
LIMCH1Q9UPQ0 RNU6-979P-201ENST00000383896 107 ntBASIC0.58□□□□□ -2.32
LIMCH1Q9UPQ0 MIR216B-201ENST00000390186 82 ntBASIC0.58□□□□□ -2.32
LIMCH1Q9UPQ0 AC098934.3-201ENST00000430450 190 ntBASIC0.58□□□□□ -2.32
LIMCH1Q9UPQ0 AC022137.1-201ENST00000483735 151 ntBASIC0.58□□□□□ -2.32
LIMCH1Q9UPQ0 SNORA25.13-201ENST00000516395 103 ntBASIC0.58□□□□□ -2.32
LIMCH1Q9UPQ0 MIR5588-201ENST00000581890 63 ntBASIC0.58□□□□□ -2.32
LIMCH1Q9UPQ0 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.58□□□□□ -2.32
LIMCH1Q9UPQ0 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.58□□□□□ -2.32
LIMCH1Q9UPQ0 Y_RNA.73-201ENST00000362910 113 ntBASIC0.57□□□□□ -2.32
LIMCH1Q9UPQ0 RNU6-242P-201ENST00000384359 107 ntBASIC0.57□□□□□ -2.32
LIMCH1Q9UPQ0 RNU6-1152P-201ENST00000384576 107 ntBASIC0.57□□□□□ -2.32
LIMCH1Q9UPQ0 MIR519E-201ENST00000385075 84 ntBASIC0.57□□□□□ -2.32
LIMCH1Q9UPQ0 RNU6-269P-201ENST00000391077 97 ntBASIC0.57□□□□□ -2.32
LIMCH1Q9UPQ0 RNU2-59P-201ENST00000410482 191 ntBASIC0.57□□□□□ -2.32
LIMCH1Q9UPQ0 RNU6-229P-201ENST00000516614 102 ntBASIC0.57□□□□□ -2.32
LIMCH1Q9UPQ0 SNORA25.18-201ENST00000607153 114 ntBASIC0.57□□□□□ -2.32
LIMCH1Q9UPQ0 AL162376.1-201ENST00000624117 175 ntBASIC0.57□□□□□ -2.32
LIMCH1Q9UPQ0 AC006160.2-201ENST00000637708 154 ntBASIC0.57□□□□□ -2.32
LIMCH1Q9UPQ0 RNU6-1051P-201ENST00000365471 102 ntBASIC0.56□□□□□ -2.32
LIMCH1Q9UPQ0 RNU6-848P-201ENST00000515948 107 ntBASIC0.56□□□□□ -2.32
LIMCH1Q9UPQ0 RNU6-617P-201ENST00000516147 107 ntBASIC0.56□□□□□ -2.32
LIMCH1Q9UPQ0 RNU6-473P-201ENST00000516164 107 ntBASIC0.56□□□□□ -2.32
LIMCH1Q9UPQ0 RNU6-1049P-201ENST00000516414 107 ntBASIC0.56□□□□□ -2.32
LIMCH1Q9UPQ0 AC140658.3-201ENST00000567603 271 ntBASIC0.56□□□□□ -2.32
LIMCH1Q9UPQ0 RNA5SP347-201ENST00000362445 119 ntBASIC0.55□□□□□ -2.32
LIMCH1Q9UPQ0 SNORA63.2-201ENST00000362603 126 ntBASIC0.55□□□□□ -2.32
LIMCH1Q9UPQ0 Y_RNA.388-201ENST00000383919 113 ntBASIC0.55□□□□□ -2.32
LIMCH1Q9UPQ0 MIR451A-201ENST00000385059 72 ntBASIC0.55□□□□□ -2.32
LIMCH1Q9UPQ0 Y_RNA.607-201ENST00000410597 98 ntBASIC0.55□□□□□ -2.32
LIMCH1Q9UPQ0 RNU7-171P-201ENST00000459581 62 ntBASIC0.55□□□□□ -2.32
LIMCH1Q9UPQ0 RNU6-624P-201ENST00000363411 107 ntBASIC0.54□□□□□ -2.32
LIMCH1Q9UPQ0 RNU6-1276P-201ENST00000365372 104 ntBASIC0.54□□□□□ -2.32
LIMCH1Q9UPQ0 AC093423.1-201ENST00000440817 142 ntBASIC0.54□□□□□ -2.32
LIMCH1Q9UPQ0 MIR4711-201ENST00000578274 70 ntBASIC0.54□□□□□ -2.32
LIMCH1Q9UPQ0 AC073869.9-201ENST00000641610 120 ntBASIC0.54□□□□□ -2.32
LIMCH1Q9UPQ0 RNU1-141P-201ENST00000364623 158 ntBASIC0.53□□□□□ -2.32
LIMCH1Q9UPQ0 RNU6-1052P-201ENST00000411398 104 ntBASIC0.53□□□□□ -2.32
LIMCH1Q9UPQ0 FGF7P7-201ENST00000514120 227 ntBASIC0.53□□□□□ -2.32
LIMCH1Q9UPQ0 SNORA72.7-201ENST00000516349 94 ntBASIC0.53□□□□□ -2.32
LIMCH1Q9UPQ0 RNU6-719P-201ENST00000516671 104 ntBASIC0.53□□□□□ -2.32
LIMCH1Q9UPQ0 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.53□□□□□ -2.32
LIMCH1Q9UPQ0 SNORD90-201ENST00000391145 111 ntBASIC0.52□□□□□ -2.33
LIMCH1Q9UPQ0 AC069271.1-201ENST00000445577 156 ntBASIC0.52□□□□□ -2.33
LIMCH1Q9UPQ0 RNA5SP476-201ENST00000516613 103 ntBASIC0.52□□□□□ -2.33
LIMCH1Q9UPQ0 MIR3140-201ENST00000583685 90 ntBASIC0.52□□□□□ -2.33
LIMCH1Q9UPQ0 AC090625.1-201ENST00000357130 210 ntBASIC0.51□□□□□ -2.33
LIMCH1Q9UPQ0 RNA5SP193-201ENST00000410353 107 ntBASIC0.51□□□□□ -2.33
LIMCH1Q9UPQ0 AC114737.2-201ENST00000421583 173 ntBASIC0.51□□□□□ -2.33
LIMCH1Q9UPQ0 AC243829.3-201ENST00000622177 108 ntBASIC0.51□□□□□ -2.33
LIMCH1Q9UPQ0 SNORD44.1-201ENST00000363202 61 ntBASIC0.5□□□□□ -2.33
LIMCH1Q9UPQ0 RNA5SP173-201ENST00000364857 136 ntBASIC0.5□□□□□ -2.33
LIMCH1Q9UPQ0 RNU6-573P-201ENST00000383938 106 ntBASIC0.5□□□□□ -2.33
LIMCH1Q9UPQ0 MIR1197-201ENST00000408818 88 ntBASIC0.5□□□□□ -2.33
LIMCH1Q9UPQ0 snoU13.17-201ENST00000458802 104 ntBASIC0.5□□□□□ -2.33
LIMCH1Q9UPQ0 MIR4460-201ENST00000577862 86 ntBASIC0.5□□□□□ -2.33
LIMCH1Q9UPQ0 MIR4666B-201ENST00000578142 81 ntBASIC0.5□□□□□ -2.33
LIMCH1Q9UPQ0 MIR548O2-201ENST00000616090 70 ntBASIC0.5□□□□□ -2.33
LIMCH1Q9UPQ0 MIR5087-201ENST00000635826 76 ntBASIC0.5□□□□□ -2.33
LIMCH1Q9UPQ0 MIRLET7D-201ENST00000362263 87 ntBASIC0.49□□□□□ -2.33
LIMCH1Q9UPQ0 RNU5F-1-201ENST00000362507 117 ntBASIC0.49□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 414.4 ms