Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 Y_RNA.586-201ENST00000391146 98 ntBASIC-0.66□□□□□ -2.52
VPS28Q9UK41 RPS29P8-201ENST00000445109 171 ntBASIC-0.66□□□□□ -2.52
VPS28Q9UK41 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-0.66□□□□□ -2.52
VPS28Q9UK41 U6.95-201ENST00000636931 70 ntBASIC-0.66□□□□□ -2.52
VPS28Q9UK41 SNORD45B-201ENST00000364617 72 ntBASIC-0.67□□□□□ -2.52
VPS28Q9UK41 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.67□□□□□ -2.52
VPS28Q9UK41 U3.27-201ENST00000391237 200 ntBASIC-0.67□□□□□ -2.52
VPS28Q9UK41 SNORD75.1-201ENST00000408373 60 ntBASIC-0.67□□□□□ -2.52
VPS28Q9UK41 RNU6-75P-201ENST00000515944 104 ntBASIC-0.67□□□□□ -2.52
VPS28Q9UK41 SNORD50.2-201ENST00000365465 70 ntBASIC-0.68□□□□□ -2.52
VPS28Q9UK41 Y_RNA.525-201ENST00000384570 113 ntBASIC-0.68□□□□□ -2.52
VPS28Q9UK41 RNA5SP395-201ENST00000516567 118 ntBASIC-0.68□□□□□ -2.52
VPS28Q9UK41 MIR5009-201ENST00000578736 100 ntBASIC-0.68□□□□□ -2.52
VPS28Q9UK41 MIR4536-1-201ENST00000583537 88 ntBASIC-0.68□□□□□ -2.52
VPS28Q9UK41 RNU6-455P-201ENST00000384681 107 ntBASIC-0.69□□□□□ -2.52
VPS28Q9UK41 MIR604-201ENST00000384880 94 ntBASIC-0.69□□□□□ -2.52
VPS28Q9UK41 RNA5SP451-201ENST00000410588 110 ntBASIC-0.69□□□□□ -2.52
VPS28Q9UK41 SNORD33.1-201ENST00000516213 88 ntBASIC-0.69□□□□□ -2.52
VPS28Q9UK41 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.69□□□□□ -2.52
VPS28Q9UK41 MIR548A1-201ENST00000385041 97 ntBASIC-0.7□□□□□ -2.52
VPS28Q9UK41 MIR548A3-201ENST00000385297 97 ntBASIC-0.7□□□□□ -2.52
VPS28Q9UK41 RNU6-907P-201ENST00000390924 102 ntBASIC-0.7□□□□□ -2.52
VPS28Q9UK41 MIR1265-201ENST00000408444 86 ntBASIC-0.7□□□□□ -2.52
VPS28Q9UK41 Y_RNA.601-201ENST00000410500 113 ntBASIC-0.7□□□□□ -2.52
VPS28Q9UK41 Z95118.1-201ENST00000421372 247 ntBASIC-0.7□□□□□ -2.52
VPS28Q9UK41 AL513043.2-201ENST00000573941 143 ntBASIC-0.7□□□□□ -2.52
VPS28Q9UK41 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.71□□□□□ -2.52
VPS28Q9UK41 RNU6-758P-201ENST00000516292 89 ntBASIC-0.71□□□□□ -2.52
VPS28Q9UK41 AL590491.3-201ENST00000610731 82 ntBASIC-0.71□□□□□ -2.52
VPS28Q9UK41 Y_RNA.10-201ENST00000362371 110 ntBASIC-0.72□□□□□ -2.52
VPS28Q9UK41 RNU6-284P-201ENST00000411105 106 ntBASIC-0.72□□□□□ -2.52
VPS28Q9UK41 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.72□□□□□ -2.52
VPS28Q9UK41 SNORD114-4-201ENST00000363962 75 ntBASIC-0.73□□□□□ -2.53
VPS28Q9UK41 SNORD2-201ENST00000459163 69 ntBASIC-0.73□□□□□ -2.53
VPS28Q9UK41 RNU6-659P-201ENST00000516454 104 ntBASIC-0.73□□□□□ -2.53
VPS28Q9UK41 MIR3613-201ENST00000579844 87 ntBASIC-0.73□□□□□ -2.53
VPS28Q9UK41 Y_RNA.95-201ENST00000363079 95 ntBASIC-0.74□□□□□ -2.53
VPS28Q9UK41 RNA5SP66-201ENST00000517178 101 ntBASIC-0.74□□□□□ -2.53
VPS28Q9UK41 AP000676.1-201ENST00000533307 52 ntBASIC-0.74□□□□□ -2.53
VPS28Q9UK41 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.75□□□□□ -2.53
VPS28Q9UK41 RNU6-54P-201ENST00000365563 107 ntBASIC-0.75□□□□□ -2.53
VPS28Q9UK41 RNU6-813P-201ENST00000384691 107 ntBASIC-0.75□□□□□ -2.53
VPS28Q9UK41 RNU6-644P-201ENST00000391155 98 ntBASIC-0.75□□□□□ -2.53
VPS28Q9UK41 RNU7-85P-201ENST00000458851 63 ntBASIC-0.75□□□□□ -2.53
VPS28Q9UK41 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.75□□□□□ -2.53
VPS28Q9UK41 RNU4-36P-201ENST00000364294 144 ntBASIC-0.76□□□□□ -2.53
VPS28Q9UK41 AL391099.1-201ENST00000624635 187 ntBASIC-0.76□□□□□ -2.53
VPS28Q9UK41 Y_RNA.218-201ENST00000364218 104 ntBASIC-0.77□□□□□ -2.53
VPS28Q9UK41 MIR9-2-201ENST00000384838 87 ntBASIC-0.77□□□□□ -2.53
VPS28Q9UK41 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.77□□□□□ -2.53
VPS28Q9UK41 MIR548U-201ENST00000390728 81 ntBASIC-0.77□□□□□ -2.53
VPS28Q9UK41 RNU6-762P-201ENST00000517107 102 ntBASIC-0.77□□□□□ -2.53
VPS28Q9UK41 AC108676.2-201ENST00000605225 163 ntBASIC-0.77□□□□□ -2.53
VPS28Q9UK41 AC103810.7-201ENST00000607821 91 ntBASIC-0.77□□□□□ -2.53
VPS28Q9UK41 Y_RNA.71-201ENST00000362892 104 ntBASIC-0.78□□□□□ -2.53
VPS28Q9UK41 SNORD114-11-201ENST00000363738 75 ntBASIC-0.78□□□□□ -2.53
VPS28Q9UK41 RNA5SP368-201ENST00000364298 116 ntBASIC-0.78□□□□□ -2.53
VPS28Q9UK41 FGF7P7-201ENST00000514120 227 ntBASIC-0.78□□□□□ -2.53
VPS28Q9UK41 SNORD115-25-201ENST00000362619 82 ntBASIC-0.79□□□□□ -2.54
VPS28Q9UK41 Y_RNA.281-201ENST00000364774 94 ntBASIC-0.79□□□□□ -2.54
VPS28Q9UK41 RNU6-209P-201ENST00000384118 107 ntBASIC-0.79□□□□□ -2.54
VPS28Q9UK41 RNU6-900P-201ENST00000384498 102 ntBASIC-0.79□□□□□ -2.54
VPS28Q9UK41 MIR224-201ENST00000384889 81 ntBASIC-0.8□□□□□ -2.54
VPS28Q9UK41 MIR6086-201ENST00000638065 55 ntBASIC-0.8□□□□□ -2.54
VPS28Q9UK41 Y_RNA.467-201ENST00000384297 102 ntBASIC-0.81□□□□□ -2.54
VPS28Q9UK41 RNU6-880P-201ENST00000384526 107 ntBASIC-0.81□□□□□ -2.54
VPS28Q9UK41 SNORA49-201ENST00000386157 136 ntBASIC-0.81□□□□□ -2.54
VPS28Q9UK41 RNU6-412P-201ENST00000516434 106 ntBASIC-0.81□□□□□ -2.54
VPS28Q9UK41 Y_RNA.703-201ENST00000516846 111 ntBASIC-0.81□□□□□ -2.54
VPS28Q9UK41 MIR3681-201ENST00000580089 72 ntBASIC-0.81□□□□□ -2.54
VPS28Q9UK41 MIR3671-201ENST00000580455 88 ntBASIC-0.81□□□□□ -2.54
VPS28Q9UK41 Y_RNA.353-201ENST00000365440 108 ntBASIC-0.82□□□□□ -2.54
VPS28Q9UK41 SNORD116-14-201ENST00000383894 92 ntBASIC-0.82□□□□□ -2.54
VPS28Q9UK41 SNORD116-17-201ENST00000383929 92 ntBASIC-0.82□□□□□ -2.54
VPS28Q9UK41 SNORD116-15-201ENST00000384445 92 ntBASIC-0.82□□□□□ -2.54
VPS28Q9UK41 Y_RNA.563-201ENST00000384707 108 ntBASIC-0.82□□□□□ -2.54
VPS28Q9UK41 SNORD116-19-201ENST00000384729 92 ntBASIC-0.82□□□□□ -2.54
VPS28Q9UK41 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.82□□□□□ -2.54
VPS28Q9UK41 RNA5SP25-201ENST00000410815 110 ntBASIC-0.82□□□□□ -2.54
VPS28Q9UK41 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.82□□□□□ -2.54
VPS28Q9UK41 RNU6-719P-201ENST00000516671 104 ntBASIC-0.82□□□□□ -2.54
VPS28Q9UK41 AC093726.3-201ENST00000637588 150 ntBASIC-0.82□□□□□ -2.54
VPS28Q9UK41 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.83□□□□□ -2.54
VPS28Q9UK41 RNU6-132P-201ENST00000383863 107 ntBASIC-0.83□□□□□ -2.54
VPS28Q9UK41 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.83□□□□□ -2.54
VPS28Q9UK41 RNU6-901P-201ENST00000384593 106 ntBASIC-0.83□□□□□ -2.54
VPS28Q9UK41 AC114755.3-201ENST00000481111 251 ntBASIC-0.83□□□□□ -2.54
VPS28Q9UK41 SNORA40.17-201ENST00000517256 115 ntBASIC-0.83□□□□□ -2.54
VPS28Q9UK41 MIR4432-201ENST00000581823 84 ntBASIC-0.83□□□□□ -2.54
VPS28Q9UK41 MIR3668-201ENST00000582138 75 ntBASIC-0.83□□□□□ -2.54
VPS28Q9UK41 SNORA63.2-201ENST00000362603 126 ntBASIC-0.84□□□□□ -2.54
VPS28Q9UK41 RNU6-1014P-201ENST00000383940 103 ntBASIC-0.84□□□□□ -2.54
VPS28Q9UK41 MIR548E-201ENST00000408287 88 ntBASIC-0.84□□□□□ -2.54
VPS28Q9UK41 MIR548I1-201ENST00000408810 149 ntBASIC-0.84□□□□□ -2.54
VPS28Q9UK41 MIR3064-201ENST00000581130 66 ntBASIC-0.84□□□□□ -2.54
VPS28Q9UK41 AC104996.3-201ENST00000590718 94 ntBASIC-0.84□□□□□ -2.54
VPS28Q9UK41 SNORD95.1-201ENST00000364099 68 ntBASIC-0.85□□□□□ -2.55
VPS28Q9UK41 RNU6-519P-201ENST00000410590 108 ntBASIC-0.85□□□□□ -2.55
VPS28Q9UK41 RNU4-63P-201ENST00000411313 118 ntBASIC-0.85□□□□□ -2.55
VPS28Q9UK41 SNORD4B-201ENST00000459083 72 ntBASIC-0.85□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 8 ms