Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.5□□□□□ -2.49
LHX3Q9UBR4 MIR216B-201ENST00000390186 82 ntBASIC-0.5□□□□□ -2.49
LHX3Q9UBR4 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.5□□□□□ -2.49
LHX3Q9UBR4 Y_RNA.648-201ENST00000459455 110 ntBASIC-0.5□□□□□ -2.49
LHX3Q9UBR4 MIR4679-2-201ENST00000578358 77 ntBASIC-0.5□□□□□ -2.49
LHX3Q9UBR4 MIR548O2-201ENST00000616090 70 ntBASIC-0.5□□□□□ -2.49
LHX3Q9UBR4 Y_RNA.506-201ENST00000384494 102 ntBASIC-0.51□□□□□ -2.49
LHX3Q9UBR4 MIR451A-201ENST00000385059 72 ntBASIC-0.51□□□□□ -2.49
LHX3Q9UBR4 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-0.51□□□□□ -2.49
LHX3Q9UBR4 Y_RNA.649-201ENST00000459077 103 ntBASIC-0.51□□□□□ -2.49
LHX3Q9UBR4 RNU6-1212P-201ENST00000517023 104 ntBASIC-0.51□□□□□ -2.49
LHX3Q9UBR4 AC068339.1-201ENST00000526965 141 ntBASIC-0.51□□□□□ -2.49
LHX3Q9UBR4 RNY3P2-201ENST00000362918 102 ntBASIC-0.52□□□□□ -2.49
LHX3Q9UBR4 SNORD95.1-201ENST00000364099 68 ntBASIC-0.52□□□□□ -2.49
LHX3Q9UBR4 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.52□□□□□ -2.49
LHX3Q9UBR4 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.52□□□□□ -2.49
LHX3Q9UBR4 RNU6-455P-201ENST00000384681 107 ntBASIC-0.52□□□□□ -2.49
LHX3Q9UBR4 MIR548A1-201ENST00000385041 97 ntBASIC-0.52□□□□□ -2.49
LHX3Q9UBR4 RNU6-75P-201ENST00000515944 104 ntBASIC-0.52□□□□□ -2.49
LHX3Q9UBR4 MIR3613-201ENST00000579844 87 ntBASIC-0.52□□□□□ -2.49
LHX3Q9UBR4 SNORD114-11-201ENST00000363738 75 ntBASIC-0.53□□□□□ -2.49
LHX3Q9UBR4 SNORD75.1-201ENST00000408373 60 ntBASIC-0.53□□□□□ -2.49
LHX3Q9UBR4 RNU6-284P-201ENST00000411105 106 ntBASIC-0.53□□□□□ -2.49
LHX3Q9UBR4 RNU6-65P-201ENST00000516332 98 ntBASIC-0.53□□□□□ -2.49
LHX3Q9UBR4 RNU6-762P-201ENST00000517107 102 ntBASIC-0.53□□□□□ -2.49
LHX3Q9UBR4 RNU6-794P-201ENST00000517261 64 ntBASIC-0.53□□□□□ -2.49
LHX3Q9UBR4 MIR4536-1-201ENST00000583537 88 ntBASIC-0.53□□□□□ -2.49
LHX3Q9UBR4 AC244090.1-201ENST00000441884 93 ntBASIC-0.54□□□□□ -2.5
LHX3Q9UBR4 RNA5SP67-201ENST00000516422 131 ntBASIC-0.54□□□□□ -2.5
LHX3Q9UBR4 AP000676.1-201ENST00000533307 52 ntBASIC-0.54□□□□□ -2.5
LHX3Q9UBR4 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.54□□□□□ -2.5
LHX3Q9UBR4 AL590491.3-201ENST00000610731 82 ntBASIC-0.54□□□□□ -2.5
LHX3Q9UBR4 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.55□□□□□ -2.5
LHX3Q9UBR4 SNORD50.2-201ENST00000365465 70 ntBASIC-0.55□□□□□ -2.5
LHX3Q9UBR4 RNU6-54P-201ENST00000365563 107 ntBASIC-0.55□□□□□ -2.5
LHX3Q9UBR4 RNY1P5-201ENST00000383890 115 ntBASIC-0.55□□□□□ -2.5
LHX3Q9UBR4 RNU6-907P-201ENST00000390924 102 ntBASIC-0.55□□□□□ -2.5
LHX3Q9UBR4 Y_RNA.586-201ENST00000391146 98 ntBASIC-0.55□□□□□ -2.5
LHX3Q9UBR4 Y_RNA.601-201ENST00000410500 113 ntBASIC-0.55□□□□□ -2.5
LHX3Q9UBR4 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.55□□□□□ -2.5
LHX3Q9UBR4 SNORD33.1-201ENST00000516213 88 ntBASIC-0.55□□□□□ -2.5
LHX3Q9UBR4 RNU6-719P-201ENST00000516671 104 ntBASIC-0.55□□□□□ -2.5
LHX3Q9UBR4 AL513043.2-201ENST00000573941 143 ntBASIC-0.55□□□□□ -2.5
LHX3Q9UBR4 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.56□□□□□ -2.5
LHX3Q9UBR4 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.56□□□□□ -2.5
LHX3Q9UBR4 MIR5009-201ENST00000578736 100 ntBASIC-0.56□□□□□ -2.5
LHX3Q9UBR4 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.56□□□□□ -2.5
LHX3Q9UBR4 MIR3914-2-201ENST00000637339 95 ntBASIC-0.56□□□□□ -2.5
LHX3Q9UBR4 RNU7-85P-201ENST00000458851 63 ntBASIC-0.57□□□□□ -2.5
LHX3Q9UBR4 AC114755.3-201ENST00000481111 251 ntBASIC-0.57□□□□□ -2.5
LHX3Q9UBR4 FGF7P7-201ENST00000514120 227 ntBASIC-0.57□□□□□ -2.5
LHX3Q9UBR4 SNORD45B-201ENST00000364617 72 ntBASIC-0.58□□□□□ -2.5
LHX3Q9UBR4 RNU6-80P-201ENST00000384195 107 ntBASIC-0.58□□□□□ -2.5
LHX3Q9UBR4 MIR548A3-201ENST00000385297 97 ntBASIC-0.58□□□□□ -2.5
LHX3Q9UBR4 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.58□□□□□ -2.5
LHX3Q9UBR4 Y_RNA.712-201ENST00000517011 92 ntBASIC-0.58□□□□□ -2.5
LHX3Q9UBR4 U3.27-201ENST00000391237 200 ntBASIC-0.59□□□□□ -2.5
LHX3Q9UBR4 AC103810.7-201ENST00000607821 91 ntBASIC-0.59□□□□□ -2.5
LHX3Q9UBR4 AL391099.1-201ENST00000624635 187 ntBASIC-0.59□□□□□ -2.5
LHX3Q9UBR4 Y_RNA.95-201ENST00000363079 95 ntBASIC-0.6□□□□□ -2.51
LHX3Q9UBR4 Y_RNA.467-201ENST00000384297 102 ntBASIC-0.6□□□□□ -2.51
LHX3Q9UBR4 MIR9-2-201ENST00000384838 87 ntBASIC-0.6□□□□□ -2.51
LHX3Q9UBR4 RNA5SP66-201ENST00000517178 101 ntBASIC-0.6□□□□□ -2.51
LHX3Q9UBR4 MIR4439-201ENST00000583746 80 ntBASIC-0.6□□□□□ -2.51
LHX3Q9UBR4 Y_RNA.218-201ENST00000364218 104 ntBASIC-0.61□□□□□ -2.51
LHX3Q9UBR4 RNU6-132P-201ENST00000383863 107 ntBASIC-0.61□□□□□ -2.51
LHX3Q9UBR4 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.61□□□□□ -2.51
LHX3Q9UBR4 SNORA49-201ENST00000386157 136 ntBASIC-0.61□□□□□ -2.51
LHX3Q9UBR4 RNU4-63P-201ENST00000411313 118 ntBASIC-0.61□□□□□ -2.51
LHX3Q9UBR4 AL445193.1-201ENST00000441183 141 ntBASIC-0.61□□□□□ -2.51
LHX3Q9UBR4 RNU6-659P-201ENST00000516454 104 ntBASIC-0.61□□□□□ -2.51
LHX3Q9UBR4 MIR3681-201ENST00000580089 72 ntBASIC-0.61□□□□□ -2.51
LHX3Q9UBR4 MIR4432-201ENST00000581823 84 ntBASIC-0.61□□□□□ -2.51
LHX3Q9UBR4 MIR4436A-201ENST00000585278 85 ntBASIC-0.61□□□□□ -2.51
LHX3Q9UBR4 U6.95-201ENST00000636931 70 ntBASIC-0.61□□□□□ -2.51
LHX3Q9UBR4 Y_RNA.71-201ENST00000362892 104 ntBASIC-0.62□□□□□ -2.51
LHX3Q9UBR4 MIR582-201ENST00000365731 98 ntBASIC-0.62□□□□□ -2.51
LHX3Q9UBR4 RNU6-901P-201ENST00000384593 106 ntBASIC-0.62□□□□□ -2.51
LHX3Q9UBR4 RNU6-813P-201ENST00000384691 107 ntBASIC-0.62□□□□□ -2.51
LHX3Q9UBR4 Y_RNA.563-201ENST00000384707 108 ntBASIC-0.62□□□□□ -2.51
LHX3Q9UBR4 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.62□□□□□ -2.51
LHX3Q9UBR4 SNORD115-25-201ENST00000362619 82 ntBASIC-0.63□□□□□ -2.51
LHX3Q9UBR4 RNU6-900P-201ENST00000384498 102 ntBASIC-0.63□□□□□ -2.51
LHX3Q9UBR4 RNU6-644P-201ENST00000391155 98 ntBASIC-0.63□□□□□ -2.51
LHX3Q9UBR4 SNORD42B-201ENST00000458893 67 ntBASIC-0.63□□□□□ -2.51
LHX3Q9UBR4 MIR548Z-201ENST00000584743 97 ntBASIC-0.63□□□□□ -2.51
LHX3Q9UBR4 SNORD114-4-201ENST00000363962 75 ntBASIC-0.64□□□□□ -2.51
LHX3Q9UBR4 MIR548E-201ENST00000408287 88 ntBASIC-0.64□□□□□ -2.51
LHX3Q9UBR4 AC097510.1-201ENST00000510945 133 ntBASIC-0.64□□□□□ -2.51
LHX3Q9UBR4 RNU6-795P-201ENST00000516323 103 ntBASIC-0.64□□□□□ -2.51
LHX3Q9UBR4 AC145423.2-201ENST00000610631 239 ntBASIC-0.64□□□□□ -2.51
LHX3Q9UBR4 SNORD114-14-201ENST00000362723 75 ntBASIC-0.65□□□□□ -2.51
LHX3Q9UBR4 RNU4-36P-201ENST00000364294 144 ntBASIC-0.65□□□□□ -2.51
LHX3Q9UBR4 Y_RNA.353-201ENST00000365440 108 ntBASIC-0.65□□□□□ -2.51
LHX3Q9UBR4 MIR548U-201ENST00000390728 81 ntBASIC-0.65□□□□□ -2.51
LHX3Q9UBR4 MIR4777-201ENST00000583710 86 ntBASIC-0.65□□□□□ -2.51
LHX3Q9UBR4 Y_RNA.10-201ENST00000362371 110 ntBASIC-0.66□□□□□ -2.52
LHX3Q9UBR4 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.66□□□□□ -2.52
LHX3Q9UBR4 snoU13.13-201ENST00000458842 104 ntBASIC-0.66□□□□□ -2.52
LHX3Q9UBR4 MIR3064-201ENST00000581130 66 ntBASIC-0.66□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 197 ms