Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC093423.1-201ENST00000440817 142 ntBASIC0.59□□□□□ -2.31
VSX1Q9NZR4 RNU7-153P-201ENST00000516455 62 ntBASIC0.59□□□□□ -2.31
VSX1Q9NZR4 RNA5SP121-201ENST00000516537 101 ntBASIC0.59□□□□□ -2.31
VSX1Q9NZR4 CYP3A137P-201ENST00000562436 69 ntBASIC0.59□□□□□ -2.31
VSX1Q9NZR4 AL078603.1-201ENST00000603824 313 ntBASIC0.59□□□□□ -2.31
VSX1Q9NZR4 Y_RNA.224-201ENST00000364308 111 ntBASIC0.58□□□□□ -2.32
VSX1Q9NZR4 MIR548J-201ENST00000408833 112 ntBASIC0.58□□□□□ -2.32
VSX1Q9NZR4 RNU6-380P-201ENST00000410207 107 ntBASIC0.58□□□□□ -2.32
VSX1Q9NZR4 AC098934.3-201ENST00000430450 190 ntBASIC0.58□□□□□ -2.32
VSX1Q9NZR4 Y_RNA.226-201ENST00000364337 114 ntBASIC0.57□□□□□ -2.32
VSX1Q9NZR4 RNY1P8-201ENST00000383970 114 ntBASIC0.57□□□□□ -2.32
VSX1Q9NZR4 MIR508-201ENST00000384857 115 ntBASIC0.57□□□□□ -2.32
VSX1Q9NZR4 RNA5SP220-201ENST00000516298 104 ntBASIC0.57□□□□□ -2.32
VSX1Q9NZR4 MIR4460-201ENST00000577862 86 ntBASIC0.57□□□□□ -2.32
VSX1Q9NZR4 MIR4714-201ENST00000580728 77 ntBASIC0.57□□□□□ -2.32
VSX1Q9NZR4 MIR548O2-201ENST00000616090 70 ntBASIC0.57□□□□□ -2.32
VSX1Q9NZR4 AC069503.3-201ENST00000618674 145 ntBASIC0.57□□□□□ -2.32
VSX1Q9NZR4 uc_338.17-201ENST00000619633 179 ntBASIC0.57□□□□□ -2.32
VSX1Q9NZR4 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.56□□□□□ -2.32
VSX1Q9NZR4 MT-TY-201ENST00000387409 66 ntBASIC0.56□□□□□ -2.32
VSX1Q9NZR4 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.56□□□□□ -2.32
VSX1Q9NZR4 RNU4-54P-201ENST00000516428 129 ntBASIC0.56□□□□□ -2.32
VSX1Q9NZR4 MIR4666B-201ENST00000578142 81 ntBASIC0.56□□□□□ -2.32
VSX1Q9NZR4 MIR3202-2-201ENST00000635980 79 ntBASIC0.56□□□□□ -2.32
VSX1Q9NZR4 SNORD77.2-201ENST00000391045 68 ntBASIC0.55□□□□□ -2.32
VSX1Q9NZR4 RNU6-592P-201ENST00000411333 103 ntBASIC0.55□□□□□ -2.32
VSX1Q9NZR4 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC0.55□□□□□ -2.32
VSX1Q9NZR4 AL450471.1-201ENST00000447509 127 ntBASIC0.55□□□□□ -2.32
VSX1Q9NZR4 AC097510.1-201ENST00000510945 133 ntBASIC0.55□□□□□ -2.32
VSX1Q9NZR4 RNA5SP436-201ENST00000516020 115 ntBASIC0.55□□□□□ -2.32
VSX1Q9NZR4 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
VSX1Q9NZR4 Y_RNA.73-201ENST00000362910 113 ntBASIC0.54□□□□□ -2.32
VSX1Q9NZR4 RNA5SP499-201ENST00000363982 119 ntBASIC0.54□□□□□ -2.32
VSX1Q9NZR4 RNU6-945P-201ENST00000383947 107 ntBASIC0.54□□□□□ -2.32
VSX1Q9NZR4 RNU6-42P-201ENST00000384165 107 ntBASIC0.54□□□□□ -2.32
VSX1Q9NZR4 RNU6-129P-201ENST00000391022 107 ntBASIC0.54□□□□□ -2.32
VSX1Q9NZR4 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.53□□□□□ -2.32
VSX1Q9NZR4 RNU6-315P-201ENST00000362666 107 ntBASIC0.53□□□□□ -2.32
VSX1Q9NZR4 Y_RNA.219-201ENST00000364232 113 ntBASIC0.53□□□□□ -2.32
VSX1Q9NZR4 SNORA2A-201ENST00000383885 135 ntBASIC0.53□□□□□ -2.32
VSX1Q9NZR4 SNORD110-201ENST00000408189 75 ntBASIC0.53□□□□□ -2.32
VSX1Q9NZR4 SNORA25.18-201ENST00000607153 114 ntBASIC0.53□□□□□ -2.32
VSX1Q9NZR4 MIR6788-201ENST00000618842 66 ntBASIC0.53□□□□□ -2.32
VSX1Q9NZR4 MIR6734-201ENST00000621166 68 ntBASIC0.53□□□□□ -2.32
VSX1Q9NZR4 AC090625.1-201ENST00000357130 210 ntBASIC0.52□□□□□ -2.33
VSX1Q9NZR4 RNU6-208P-201ENST00000362431 107 ntBASIC0.52□□□□□ -2.33
VSX1Q9NZR4 SNORD114-4-201ENST00000363962 75 ntBASIC0.52□□□□□ -2.33
VSX1Q9NZR4 RNU6-681P-201ENST00000364012 104 ntBASIC0.52□□□□□ -2.33
VSX1Q9NZR4 MIR92A1-201ENST00000385233 78 ntBASIC0.52□□□□□ -2.33
VSX1Q9NZR4 RNU6-1177P-201ENST00000391058 104 ntBASIC0.52□□□□□ -2.33
VSX1Q9NZR4 AC006210.1-201ENST00000424882 111 ntBASIC0.52□□□□□ -2.33
VSX1Q9NZR4 RNA5SP484-201ENST00000458857 111 ntBASIC0.52□□□□□ -2.33
VSX1Q9NZR4 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.52□□□□□ -2.33
VSX1Q9NZR4 RNU6-686P-201ENST00000364839 107 ntBASIC0.51□□□□□ -2.33
VSX1Q9NZR4 Y_RNA.388-201ENST00000383919 113 ntBASIC0.51□□□□□ -2.33
VSX1Q9NZR4 SNORA24B-201ENST00000384176 131 ntBASIC0.51□□□□□ -2.33
VSX1Q9NZR4 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.51□□□□□ -2.33
VSX1Q9NZR4 AC069271.1-201ENST00000445577 156 ntBASIC0.51□□□□□ -2.33
VSX1Q9NZR4 RNU7-24P-201ENST00000458867 62 ntBASIC0.51□□□□□ -2.33
VSX1Q9NZR4 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.51□□□□□ -2.33
VSX1Q9NZR4 MIR151B-201ENST00000584249 96 ntBASIC0.51□□□□□ -2.33
VSX1Q9NZR4 NAMPTP3-201ENST00000569273 224 ntBASIC0.5□□□□□ -2.33
VSX1Q9NZR4 MIR5000-201ENST00000577717 103 ntBASIC0.5□□□□□ -2.33
VSX1Q9NZR4 YWHAEP2-201ENST00000580066 112 ntBASIC0.5□□□□□ -2.33
VSX1Q9NZR4 YWHAEP3-201ENST00000582767 121 ntBASIC0.5□□□□□ -2.33
VSX1Q9NZR4 MIR3140-201ENST00000583685 90 ntBASIC0.5□□□□□ -2.33
VSX1Q9NZR4 SNORD44.1-201ENST00000363202 61 ntBASIC0.49□□□□□ -2.33
VSX1Q9NZR4 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.49□□□□□ -2.33
VSX1Q9NZR4 Y_RNA.606-201ENST00000410579 103 ntBASIC0.49□□□□□ -2.33
VSX1Q9NZR4 RNU6-1052P-201ENST00000411398 104 ntBASIC0.49□□□□□ -2.33
VSX1Q9NZR4 RNU6-229P-201ENST00000516614 102 ntBASIC0.49□□□□□ -2.33
VSX1Q9NZR4 RNU6-719P-201ENST00000516671 104 ntBASIC0.49□□□□□ -2.33
VSX1Q9NZR4 RNU6-1223P-201ENST00000517124 104 ntBASIC0.49□□□□□ -2.33
VSX1Q9NZR4 MIR1245B-201ENST00000636115 69 ntBASIC0.49□□□□□ -2.33
VSX1Q9NZR4 RNA5SP173-201ENST00000364857 136 ntBASIC0.48□□□□□ -2.33
VSX1Q9NZR4 Y_RNA.316-201ENST00000365118 111 ntBASIC0.48□□□□□ -2.33
VSX1Q9NZR4 MIR216A-201ENST00000385063 110 ntBASIC0.48□□□□□ -2.33
VSX1Q9NZR4 AL157398.1-201ENST00000452981 186 ntBASIC0.48□□□□□ -2.33
VSX1Q9NZR4 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.48□□□□□ -2.33
VSX1Q9NZR4 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.47□□□□□ -2.33
VSX1Q9NZR4 Y_RNA.437-201ENST00000384113 113 ntBASIC0.47□□□□□ -2.33
VSX1Q9NZR4 snoU13.18-201ENST00000459483 104 ntBASIC0.47□□□□□ -2.33
VSX1Q9NZR4 MIR1297-201ENST00000637311 77 ntBASIC0.47□□□□□ -2.33
VSX1Q9NZR4 RNU6-1094P-201ENST00000362416 104 ntBASIC0.46□□□□□ -2.34
VSX1Q9NZR4 RNU6-495P-201ENST00000362995 107 ntBASIC0.46□□□□□ -2.34
VSX1Q9NZR4 RNU6V-201ENST00000384105 107 ntBASIC0.46□□□□□ -2.34
VSX1Q9NZR4 SNORD75.2-201ENST00000408784 58 ntBASIC0.46□□□□□ -2.34
VSX1Q9NZR4 RNU6-752P-201ENST00000516376 102 ntBASIC0.46□□□□□ -2.34
VSX1Q9NZR4 MIRLET7A1-201ENST00000362295 80 ntBASIC0.45□□□□□ -2.34
VSX1Q9NZR4 RNU6-161P-201ENST00000363051 106 ntBASIC0.45□□□□□ -2.34
VSX1Q9NZR4 Y_RNA.407-201ENST00000383986 113 ntBASIC0.45□□□□□ -2.34
VSX1Q9NZR4 SNORD90-201ENST00000391145 111 ntBASIC0.45□□□□□ -2.34
VSX1Q9NZR4 snoU13.17-201ENST00000458802 104 ntBASIC0.45□□□□□ -2.34
VSX1Q9NZR4 RNU6-807P-201ENST00000516805 107 ntBASIC0.45□□□□□ -2.34
VSX1Q9NZR4 uc_338.10-201ENST00000621872 182 ntBASIC0.45□□□□□ -2.34
VSX1Q9NZR4 MIRLET7D-201ENST00000362263 87 ntBASIC0.44□□□□□ -2.34
VSX1Q9NZR4 RNU6-340P-201ENST00000364005 107 ntBASIC0.44□□□□□ -2.34
VSX1Q9NZR4 RNU6-652P-201ENST00000365488 107 ntBASIC0.44□□□□□ -2.34
VSX1Q9NZR4 Y_RNA.423-201ENST00000384057 113 ntBASIC0.44□□□□□ -2.34
VSX1Q9NZR4 RNU6-303P-201ENST00000517091 106 ntBASIC0.44□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 198.3 ms