Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 MIR335-201ENST00000362173 94 ntBASIC-2.47□□□□□ -2.8
USE1Q9NZ43 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-2.47□□□□□ -2.8
USE1Q9NZ43 MIR4536-1-201ENST00000583537 88 ntBASIC-2.47□□□□□ -2.8
USE1Q9NZ43 Y_RNA.527-201ENST00000384573 102 ntBASIC-2.48□□□□□ -2.81
USE1Q9NZ43 Y_RNA.698-201ENST00000516798 118 ntBASIC-2.48□□□□□ -2.81
USE1Q9NZ43 Y_RNA.804-201ENST00000615262 101 ntBASIC-2.48□□□□□ -2.81
USE1Q9NZ43 Y_RNA.356-201ENST00000365475 113 ntBASIC-2.49□□□□□ -2.81
USE1Q9NZ43 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-2.49□□□□□ -2.81
USE1Q9NZ43 RNU6-1333P-201ENST00000516162 93 ntBASIC-2.49□□□□□ -2.81
USE1Q9NZ43 Y_RNA.686-201ENST00000516548 134 ntBASIC-2.49□□□□□ -2.81
USE1Q9NZ43 RNU6-1018P-201ENST00000516577 106 ntBASIC-2.5□□□□□ -2.81
USE1Q9NZ43 AC139792.2-201ENST00000624218 587 ntBASIC-2.5□□□□□ -2.81
USE1Q9NZ43 SNORA63.2-201ENST00000362603 126 ntBASIC-2.51□□□□□ -2.81
USE1Q9NZ43 RNU6-363P-201ENST00000362895 105 ntBASIC-2.51□□□□□ -2.81
USE1Q9NZ43 Y_RNA.75-201ENST00000362927 97 ntBASIC-2.51□□□□□ -2.81
USE1Q9NZ43 MIR759-201ENST00000390224 91 ntBASIC-2.51□□□□□ -2.81
USE1Q9NZ43 RNU6-1009P-201ENST00000390996 107 ntBASIC-2.51□□□□□ -2.81
USE1Q9NZ43 Y_RNA.337-201ENST00000365312 102 ntBASIC-2.52□□□□□ -2.81
USE1Q9NZ43 Y_RNA.461-201ENST00000384263 103 ntBASIC-2.52□□□□□ -2.81
USE1Q9NZ43 MIR3140-201ENST00000583685 90 ntBASIC-2.52□□□□□ -2.81
USE1Q9NZ43 Y_RNA.213-201ENST00000364178 111 ntBASIC-2.53□□□□□ -2.81
USE1Q9NZ43 SNORD42.2-201ENST00000365570 69 ntBASIC-2.53□□□□□ -2.81
USE1Q9NZ43 Y_RNA.613-201ENST00000410726 97 ntBASIC-2.53□□□□□ -2.81
USE1Q9NZ43 RNU7-24P-201ENST00000458867 62 ntBASIC-2.53□□□□□ -2.81
USE1Q9NZ43 RNU6-988P-201ENST00000519081 107 ntBASIC-2.53□□□□□ -2.81
USE1Q9NZ43 Y_RNA.153-201ENST00000363615 91 ntBASIC-2.54□□□□□ -2.82
USE1Q9NZ43 RNY1P11-201ENST00000363759 113 ntBASIC-2.54□□□□□ -2.82
USE1Q9NZ43 RNU6-409P-201ENST00000384114 104 ntBASIC-2.54□□□□□ -2.82
USE1Q9NZ43 RNU6-80P-201ENST00000384195 107 ntBASIC-2.54□□□□□ -2.82
USE1Q9NZ43 RNU6-983P-201ENST00000516004 103 ntBASIC-2.54□□□□□ -2.82
USE1Q9NZ43 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-2.54□□□□□ -2.82
USE1Q9NZ43 AL442128.1-201ENST00000615151 90 ntBASIC-2.54□□□□□ -2.82
USE1Q9NZ43 Y_RNA.155-201ENST00000363632 101 ntBASIC-2.55□□□□□ -2.82
USE1Q9NZ43 RNU6-704P-201ENST00000364162 103 ntBASIC-2.55□□□□□ -2.82
USE1Q9NZ43 MIR548A1-201ENST00000385041 97 ntBASIC-2.55□□□□□ -2.82
USE1Q9NZ43 RNU6-1177P-201ENST00000391058 104 ntBASIC-2.55□□□□□ -2.82
USE1Q9NZ43 MIR1255B2-201ENST00000408618 67 ntBASIC-2.55□□□□□ -2.82
USE1Q9NZ43 SNORD75.2-201ENST00000408784 58 ntBASIC-2.55□□□□□ -2.82
USE1Q9NZ43 RNU6-732P-201ENST00000516033 103 ntBASIC-2.55□□□□□ -2.82
USE1Q9NZ43 RNA5SP272-201ENST00000516095 111 ntBASIC-2.55□□□□□ -2.82
USE1Q9NZ43 MIR3646-201ENST00000578301 84 ntBASIC-2.55□□□□□ -2.82
USE1Q9NZ43 U6atac.1-201ENST00000616025 117 ntBASIC-2.55□□□□□ -2.82
USE1Q9NZ43 AC025521.1-201ENST00000621624 286 ntBASIC-2.55□□□□□ -2.82
USE1Q9NZ43 Y_RNA.277-201ENST00000364754 102 ntBASIC-2.56□□□□□ -2.82
USE1Q9NZ43 Y_RNA.528-201ENST00000384575 108 ntBASIC-2.56□□□□□ -2.82
USE1Q9NZ43 RNU6-540P-201ENST00000384622 101 ntBASIC-2.56□□□□□ -2.82
USE1Q9NZ43 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-2.56□□□□□ -2.82
USE1Q9NZ43 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-2.56□□□□□ -2.82
USE1Q9NZ43 Y_RNA.158-201ENST00000363651 101 ntBASIC-2.57□□□□□ -2.82
USE1Q9NZ43 SNORD18.1-201ENST00000363807 70 ntBASIC-2.57□□□□□ -2.82
USE1Q9NZ43 SNORD115-27-201ENST00000364430 82 ntBASIC-2.57□□□□□ -2.82
USE1Q9NZ43 RNY4P28-201ENST00000365281 93 ntBASIC-2.57□□□□□ -2.82
USE1Q9NZ43 SNORA15B-2-201ENST00000384058 135 ntBASIC-2.57□□□□□ -2.82
USE1Q9NZ43 SNORA15B-1-201ENST00000384334 135 ntBASIC-2.57□□□□□ -2.82
USE1Q9NZ43 MIR548D2-201ENST00000384955 97 ntBASIC-2.57□□□□□ -2.82
USE1Q9NZ43 RNU6-168P-201ENST00000516189 101 ntBASIC-2.57□□□□□ -2.82
USE1Q9NZ43 Y_RNA.198-201ENST00000364013 98 ntBASIC-2.58□□□□□ -2.82
USE1Q9NZ43 RNU6-132P-201ENST00000383863 107 ntBASIC-2.58□□□□□ -2.82
USE1Q9NZ43 MIR4490-201ENST00000582647 84 ntBASIC-2.58□□□□□ -2.82
USE1Q9NZ43 Y_RNA.223-201ENST00000364290 113 ntBASIC-2.59□□□□□ -2.82
USE1Q9NZ43 Y_RNA.352-201ENST00000365439 102 ntBASIC-2.6□□□□□ -2.83
USE1Q9NZ43 SNORD50.2-201ENST00000365465 70 ntBASIC-2.6□□□□□ -2.83
USE1Q9NZ43 SNORA24B-201ENST00000384176 131 ntBASIC-2.6□□□□□ -2.83
USE1Q9NZ43 RNU7-85P-201ENST00000458851 63 ntBASIC-2.6□□□□□ -2.83
USE1Q9NZ43 Y_RNA.678-201ENST00000516408 96 ntBASIC-2.6□□□□□ -2.83
USE1Q9NZ43 FAS-AS1.1-201ENST00000615327 126 ntBASIC-2.6□□□□□ -2.83
USE1Q9NZ43 SNORA33.1-201ENST00000364957 130 ntBASIC-2.61□□□□□ -2.83
USE1Q9NZ43 Y_RNA.507-201ENST00000384500 99 ntBASIC-2.61□□□□□ -2.83
USE1Q9NZ43 Y_RNA.558-201ENST00000384685 113 ntBASIC-2.61□□□□□ -2.83
USE1Q9NZ43 RNU6-713P-201ENST00000384761 107 ntBASIC-2.61□□□□□ -2.83
USE1Q9NZ43 RNU6-400P-201ENST00000391173 106 ntBASIC-2.61□□□□□ -2.83
USE1Q9NZ43 AC090616.4-201ENST00000448026 115 ntBASIC-2.61□□□□□ -2.83
USE1Q9NZ43 MIR4795-201ENST00000584182 89 ntBASIC-2.61□□□□□ -2.83
USE1Q9NZ43 Y_RNA.401-201ENST00000383965 117 ntBASIC-2.62□□□□□ -2.83
USE1Q9NZ43 MT-TW-201ENST00000387382 68 ntBASIC-2.62□□□□□ -2.83
USE1Q9NZ43 MIR548U-201ENST00000390728 81 ntBASIC-2.62□□□□□ -2.83
USE1Q9NZ43 SNORD37.2-201ENST00000391075 66 ntBASIC-2.62□□□□□ -2.83
USE1Q9NZ43 SNORD127-201ENST00000458892 86 ntBASIC-2.62□□□□□ -2.83
USE1Q9NZ43 RNA5SP147-201ENST00000516493 109 ntBASIC-2.62□□□□□ -2.83
USE1Q9NZ43 AP002795.1-201ENST00000534879 84 ntBASIC-2.62□□□□□ -2.83
USE1Q9NZ43 Y_RNA.426-201ENST00000384068 113 ntBASIC-2.63□□□□□ -2.83
USE1Q9NZ43 snoU13.17-201ENST00000458802 104 ntBASIC-2.63□□□□□ -2.83
USE1Q9NZ43 RNU6-875P-201ENST00000516488 106 ntBASIC-2.63□□□□□ -2.83
USE1Q9NZ43 RNU6-1271P-201ENST00000517049 105 ntBASIC-2.63□□□□□ -2.83
USE1Q9NZ43 RNU6-1238P-201ENST00000517215 102 ntBASIC-2.63□□□□□ -2.83
USE1Q9NZ43 CYP3A54P-201ENST00000566950 75 ntBASIC-2.63□□□□□ -2.83
USE1Q9NZ43 MIR4680-201ENST00000580906 66 ntBASIC-2.63□□□□□ -2.83
USE1Q9NZ43 MIR5683-201ENST00000636514 76 ntBASIC-2.63□□□□□ -2.83
USE1Q9NZ43 Y_RNA.348-201ENST00000365403 103 ntBASIC-2.64□□□□□ -2.83
USE1Q9NZ43 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-2.64□□□□□ -2.83
USE1Q9NZ43 Y_RNA.163-201ENST00000363702 113 ntBASIC-2.65□□□□□ -2.83
USE1Q9NZ43 RNU6-260P-201ENST00000384092 107 ntBASIC-2.65□□□□□ -2.83
USE1Q9NZ43 RNU6-474P-201ENST00000384243 107 ntBASIC-2.65□□□□□ -2.83
USE1Q9NZ43 Y_RNA.250-201ENST00000364542 110 ntBASIC-2.66□□□□□ -2.84
USE1Q9NZ43 RNU6-119P-201ENST00000364882 107 ntBASIC-2.66□□□□□ -2.84
USE1Q9NZ43 Y_RNA.483-201ENST00000384380 101 ntBASIC-2.66□□□□□ -2.84
USE1Q9NZ43 RPL35AP4-201ENST00000412007 102 ntBASIC-2.66□□□□□ -2.84
USE1Q9NZ43 AC018880.2-201ENST00000414265 201 ntBASIC-2.66□□□□□ -2.84
USE1Q9NZ43 MIR3064-201ENST00000581130 66 ntBASIC-2.66□□□□□ -2.84
USE1Q9NZ43 RNU6-1014P-201ENST00000383940 103 ntBASIC-2.67□□□□□ -2.84
Retrieved 100 of 98,524 protein–RNA pairs in 184.9 ms