Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 Y_RNA.701-201ENST00000516812 110 ntBASIC-1.08□□□□□ -2.58
USP42Q9H9J4 AC026421.1-201ENST00000519101 163 ntBASIC-1.08□□□□□ -2.58
USP42Q9H9J4 MIRLET7F1-201ENST00000362202 87 ntBASIC-1.09□□□□□ -2.58
USP42Q9H9J4 Y_RNA.47-201ENST00000362697 108 ntBASIC-1.09□□□□□ -2.58
USP42Q9H9J4 RNU6-1125P-201ENST00000363601 107 ntBASIC-1.09□□□□□ -2.58
USP42Q9H9J4 Y_RNA.155-201ENST00000363632 101 ntBASIC-1.09□□□□□ -2.58
USP42Q9H9J4 RNU6-647P-201ENST00000364243 107 ntBASIC-1.09□□□□□ -2.58
USP42Q9H9J4 RNU6-409P-201ENST00000384114 104 ntBASIC-1.09□□□□□ -2.58
USP42Q9H9J4 Y_RNA.452-201ENST00000384202 108 ntBASIC-1.09□□□□□ -2.58
USP42Q9H9J4 RNU7-197P-201ENST00000458836 62 ntBASIC-1.09□□□□□ -2.58
USP42Q9H9J4 RNU6-479P-201ENST00000516348 105 ntBASIC-1.09□□□□□ -2.58
USP42Q9H9J4 AL442128.1-201ENST00000615151 90 ntBASIC-1.09□□□□□ -2.58
USP42Q9H9J4 AC132825.6-201ENST00000638861 357 ntBASIC-1.09□□□□□ -2.58
USP42Q9H9J4 RNU6-1020P-201ENST00000363684 107 ntBASIC-1.1□□□□□ -2.59
USP42Q9H9J4 SNORA62.4-201ENST00000365504 151 ntBASIC-1.1□□□□□ -2.59
USP42Q9H9J4 RNU6-460P-201ENST00000391158 108 ntBASIC-1.1□□□□□ -2.59
USP42Q9H9J4 RNU6-111P-201ENST00000517179 105 ntBASIC-1.1□□□□□ -2.59
USP42Q9H9J4 RNU6-706P-201ENST00000517229 104 ntBASIC-1.1□□□□□ -2.59
USP42Q9H9J4 AC130289.1-201ENST00000577321 73 ntBASIC-1.1□□□□□ -2.59
USP42Q9H9J4 MIR3128-201ENST00000581957 66 ntBASIC-1.1□□□□□ -2.59
USP42Q9H9J4 AC141273.2-201ENST00000618989 130 ntBASIC-1.1□□□□□ -2.59
USP42Q9H9J4 AC025521.1-201ENST00000621624 286 ntBASIC-1.1□□□□□ -2.59
USP42Q9H9J4 Y_RNA.114-201ENST00000363265 113 ntBASIC-1.11□□□□□ -2.59
USP42Q9H9J4 MIR1263-201ENST00000408324 86 ntBASIC-1.11□□□□□ -2.59
USP42Q9H9J4 RNU7-134P-201ENST00000458997 64 ntBASIC-1.11□□□□□ -2.59
USP42Q9H9J4 RNU6-65P-201ENST00000516332 98 ntBASIC-1.11□□□□□ -2.59
USP42Q9H9J4 RNU6-1153P-201ENST00000516760 105 ntBASIC-1.11□□□□□ -2.59
USP42Q9H9J4 AL117187.1-201ENST00000555482 181 ntBASIC-1.11□□□□□ -2.59
USP42Q9H9J4 MIR4536-1-201ENST00000583537 88 ntBASIC-1.11□□□□□ -2.59
USP42Q9H9J4 AC138207.3-201ENST00000585289 166 ntBASIC-1.11□□□□□ -2.59
USP42Q9H9J4 RNU6-208P-201ENST00000362431 107 ntBASIC-1.12□□□□□ -2.59
USP42Q9H9J4 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.12□□□□□ -2.59
USP42Q9H9J4 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.12□□□□□ -2.59
USP42Q9H9J4 Y_RNA.441-201ENST00000384123 112 ntBASIC-1.12□□□□□ -2.59
USP42Q9H9J4 RNA5SP136-201ENST00000410906 107 ntBASIC-1.12□□□□□ -2.59
USP42Q9H9J4 YWHAEP3-201ENST00000582767 121 ntBASIC-1.12□□□□□ -2.59
USP42Q9H9J4 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-1.12□□□□□ -2.59
USP42Q9H9J4 U6.96-201ENST00000636425 70 ntBASIC-1.12□□□□□ -2.59
USP42Q9H9J4 RNU6-495P-201ENST00000362995 107 ntBASIC-1.13□□□□□ -2.59
USP42Q9H9J4 RNU6-990P-201ENST00000364385 104 ntBASIC-1.13□□□□□ -2.59
USP42Q9H9J4 RNU6-915P-201ENST00000364943 103 ntBASIC-1.13□□□□□ -2.59
USP42Q9H9J4 RNU4-11P-201ENST00000365287 132 ntBASIC-1.13□□□□□ -2.59
USP42Q9H9J4 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.13□□□□□ -2.59
USP42Q9H9J4 Y_RNA.507-201ENST00000384500 99 ntBASIC-1.13□□□□□ -2.59
USP42Q9H9J4 MIR29B1-201ENST00000385015 81 ntBASIC-1.13□□□□□ -2.59
USP42Q9H9J4 RNU7-85P-201ENST00000458851 63 ntBASIC-1.13□□□□□ -2.59
USP42Q9H9J4 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.13□□□□□ -2.59
USP42Q9H9J4 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.13□□□□□ -2.59
USP42Q9H9J4 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.13□□□□□ -2.59
USP42Q9H9J4 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.13□□□□□ -2.59
USP42Q9H9J4 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.13□□□□□ -2.59
USP42Q9H9J4 Y_RNA.200-201ENST00000364018 102 ntBASIC-1.14□□□□□ -2.59
USP42Q9H9J4 SNORD50.2-201ENST00000365465 70 ntBASIC-1.14□□□□□ -2.59
USP42Q9H9J4 RNU6-132P-201ENST00000383863 107 ntBASIC-1.14□□□□□ -2.59
USP42Q9H9J4 RNU6-1227P-201ENST00000383981 107 ntBASIC-1.14□□□□□ -2.59
USP42Q9H9J4 Y_RNA.478-201ENST00000384358 107 ntBASIC-1.14□□□□□ -2.59
USP42Q9H9J4 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.14□□□□□ -2.59
USP42Q9H9J4 Y_RNA.668-201ENST00000516233 93 ntBASIC-1.14□□□□□ -2.59
USP42Q9H9J4 MIR3140-201ENST00000583685 90 ntBASIC-1.14□□□□□ -2.59
USP42Q9H9J4 AC044792.1-201ENST00000593294 196 ntBASIC-1.14□□□□□ -2.59
USP42Q9H9J4 Y_RNA.150-201ENST00000363562 102 ntBASIC-1.15□□□□□ -2.59
USP42Q9H9J4 Y_RNA.350-201ENST00000365409 98 ntBASIC-1.15□□□□□ -2.59
USP42Q9H9J4 RNU6-1160P-201ENST00000384546 104 ntBASIC-1.15□□□□□ -2.59
USP42Q9H9J4 AC021146.9-201ENST00000512503 156 ntBASIC-1.15□□□□□ -2.59
USP42Q9H9J4 RNU6-781P-201ENST00000516377 101 ntBASIC-1.15□□□□□ -2.59
USP42Q9H9J4 U4.2-201ENST00000618561 85 ntBASIC-1.15□□□□□ -2.59
USP42Q9H9J4 AC090617.8-201ENST00000623339 167 ntBASIC-1.15□□□□□ -2.59
USP42Q9H9J4 SNORA63.2-201ENST00000362603 126 ntBASIC-1.15□□□□□ -2.59
USP42Q9H9J4 Y_RNA.422-201ENST00000384054 114 ntBASIC-1.15□□□□□ -2.59
USP42Q9H9J4 Y_RNA.528-201ENST00000384575 108 ntBASIC-1.15□□□□□ -2.59
USP42Q9H9J4 RNU6-816P-201ENST00000390914 107 ntBASIC-1.15□□□□□ -2.59
USP42Q9H9J4 RNU6-1268P-201ENST00000391214 107 ntBASIC-1.15□□□□□ -2.59
USP42Q9H9J4 RNU6-1239P-201ENST00000391310 107 ntBASIC-1.15□□□□□ -2.59
USP42Q9H9J4 RNU6-1271P-201ENST00000517049 105 ntBASIC-1.15□□□□□ -2.59
USP42Q9H9J4 MIR4464-201ENST00000580818 92 ntBASIC-1.15□□□□□ -2.59
USP42Q9H9J4 AL353803.5-201ENST00000599815 141 ntBASIC-1.15□□□□□ -2.59
USP42Q9H9J4 Y_RNA.11-201ENST00000362375 109 ntBASIC-1.16□□□□□ -2.6
USP42Q9H9J4 Y_RNA.163-201ENST00000363702 113 ntBASIC-1.16□□□□□ -2.6
USP42Q9H9J4 SNORA24B-201ENST00000384176 131 ntBASIC-1.16□□□□□ -2.6
USP42Q9H9J4 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.16□□□□□ -2.6
USP42Q9H9J4 SNORA81.3-201ENST00000517283 198 ntBASIC-1.16□□□□□ -2.6
USP42Q9H9J4 AC068339.1-201ENST00000526965 141 ntBASIC-1.16□□□□□ -2.6
USP42Q9H9J4 Y_RNA.149-201ENST00000363558 117 ntBASIC-1.17□□□□□ -2.6
USP42Q9H9J4 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.17□□□□□ -2.6
USP42Q9H9J4 Y_RNA.326-201ENST00000365176 113 ntBASIC-1.17□□□□□ -2.6
USP42Q9H9J4 RNU6-1130P-201ENST00000365434 107 ntBASIC-1.17□□□□□ -2.6
USP42Q9H9J4 MIR577-201ENST00000385196 96 ntBASIC-1.17□□□□□ -2.6
USP42Q9H9J4 MIR8485-201ENST00000401372 91 ntBASIC-1.17□□□□□ -2.6
USP42Q9H9J4 MIR1207-201ENST00000408249 87 ntBASIC-1.17□□□□□ -2.6
USP42Q9H9J4 RNU6-1023P-201ENST00000516137 106 ntBASIC-1.17□□□□□ -2.6
USP42Q9H9J4 RNA5SP180-201ENST00000516181 101 ntBASIC-1.17□□□□□ -2.6
USP42Q9H9J4 MIR6818-201ENST00000621576 65 ntBASIC-1.17□□□□□ -2.6
USP42Q9H9J4 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.17□□□□□ -2.6
USP42Q9H9J4 SNORD114-3-201ENST00000364969 75 ntBASIC-1.18□□□□□ -2.6
USP42Q9H9J4 MIR568-201ENST00000385036 95 ntBASIC-1.18□□□□□ -2.6
USP42Q9H9J4 RNU6-1177P-201ENST00000391058 104 ntBASIC-1.18□□□□□ -2.6
USP42Q9H9J4 Y_RNA.633-201ENST00000459107 95 ntBASIC-1.18□□□□□ -2.6
USP42Q9H9J4 AL513043.2-201ENST00000573941 143 ntBASIC-1.18□□□□□ -2.6
USP42Q9H9J4 AC008737.2-201ENST00000599446 118 ntBASIC-1.18□□□□□ -2.6
USP42Q9H9J4 AL445584.3-201ENST00000617173 78 ntBASIC-1.18□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms