Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.25□□□□□ -2.21
CHFRQ96EP1 AC079150.2-201ENST00000443733 78 ntBASIC1.25□□□□□ -2.21
CHFRQ96EP1 RNU6-1057P-201ENST00000517162 102 ntBASIC1.25□□□□□ -2.21
CHFRQ96EP1 NAMPTP3-201ENST00000569273 224 ntBASIC1.25□□□□□ -2.21
CHFRQ96EP1 MIR4804-201ENST00000581683 73 ntBASIC1.25□□□□□ -2.21
CHFRQ96EP1 MIR6734-201ENST00000621166 68 ntBASIC1.25□□□□□ -2.21
CHFRQ96EP1 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.25□□□□□ -2.21
CHFRQ96EP1 RNA5SP327-201ENST00000362494 101 ntBASIC1.24□□□□□ -2.21
CHFRQ96EP1 Y_RNA.32-201ENST00000362589 110 ntBASIC1.24□□□□□ -2.21
CHFRQ96EP1 RNU6-495P-201ENST00000362995 107 ntBASIC1.24□□□□□ -2.21
CHFRQ96EP1 RNA5SP403-201ENST00000363598 108 ntBASIC1.24□□□□□ -2.21
CHFRQ96EP1 RNU6-364P-201ENST00000384387 107 ntBASIC1.24□□□□□ -2.21
CHFRQ96EP1 MIR520E-201ENST00000384867 87 ntBASIC1.24□□□□□ -2.21
CHFRQ96EP1 MIR938-201ENST00000401216 83 ntBASIC1.24□□□□□ -2.21
CHFRQ96EP1 SNORD75.2-201ENST00000408784 58 ntBASIC1.24□□□□□ -2.21
CHFRQ96EP1 RNU7-56P-201ENST00000458744 62 ntBASIC1.24□□□□□ -2.21
CHFRQ96EP1 SNORA31.2-201ENST00000516019 134 ntBASIC1.24□□□□□ -2.21
CHFRQ96EP1 RNU6-977P-201ENST00000516411 103 ntBASIC1.24□□□□□ -2.21
CHFRQ96EP1 SNORA31.14-201ENST00000516728 116 ntBASIC1.24□□□□□ -2.21
CHFRQ96EP1 RNU7-161P-201ENST00000517289 62 ntBASIC1.24□□□□□ -2.21
CHFRQ96EP1 MIR3920-201ENST00000581751 86 ntBASIC1.24□□□□□ -2.21
CHFRQ96EP1 uc_338.16-201ENST00000621804 95 ntBASIC1.24□□□□□ -2.21
CHFRQ96EP1 SNORD115-44-201ENST00000365391 82 ntBASIC1.23□□□□□ -2.21
CHFRQ96EP1 RNU6-1039P-201ENST00000383931 107 ntBASIC1.23□□□□□ -2.21
CHFRQ96EP1 AL691482.2-201ENST00000457453 84 ntBASIC1.23□□□□□ -2.21
CHFRQ96EP1 RNU7-24P-201ENST00000458867 62 ntBASIC1.23□□□□□ -2.21
CHFRQ96EP1 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
CHFRQ96EP1 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.23□□□□□ -2.21
CHFRQ96EP1 RNU6-42P-201ENST00000384165 107 ntBASIC1.22□□□□□ -2.21
CHFRQ96EP1 MIR222-201ENST00000384992 110 ntBASIC1.22□□□□□ -2.21
CHFRQ96EP1 RNU6-141P-201ENST00000410499 105 ntBASIC1.22□□□□□ -2.21
CHFRQ96EP1 RNU7-21P-201ENST00000459430 62 ntBASIC1.22□□□□□ -2.21
CHFRQ96EP1 RNU7-13P-201ENST00000516413 62 ntBASIC1.22□□□□□ -2.21
CHFRQ96EP1 AC069503.3-201ENST00000618674 145 ntBASIC1.22□□□□□ -2.21
CHFRQ96EP1 MIR203A-201ENST00000384836 110 ntBASIC1.21□□□□□ -2.22
CHFRQ96EP1 RNA5SP220-201ENST00000516298 104 ntBASIC1.21□□□□□ -2.22
CHFRQ96EP1 SNORA40.17-201ENST00000517256 115 ntBASIC1.21□□□□□ -2.22
CHFRQ96EP1 AC022709.1-201ENST00000615967 87 ntBASIC1.21□□□□□ -2.22
CHFRQ96EP1 SNORD115-24-201ENST00000363528 82 ntBASIC1.2□□□□□ -2.22
CHFRQ96EP1 RNU6-54P-201ENST00000365563 107 ntBASIC1.2□□□□□ -2.22
CHFRQ96EP1 RPS29P1-201ENST00000465274 159 ntBASIC1.2□□□□□ -2.22
CHFRQ96EP1 MIR6509-201ENST00000614603 85 ntBASIC1.2□□□□□ -2.22
CHFRQ96EP1 MIR548O2-201ENST00000616090 70 ntBASIC1.2□□□□□ -2.22
CHFRQ96EP1 RNU6-829P-201ENST00000363700 112 ntBASIC1.19□□□□□ -2.22
CHFRQ96EP1 Y_RNA.375-201ENST00000365625 101 ntBASIC1.19□□□□□ -2.22
CHFRQ96EP1 MIR519E-201ENST00000385075 84 ntBASIC1.19□□□□□ -2.22
CHFRQ96EP1 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.19□□□□□ -2.22
CHFRQ96EP1 AL591704.2-201ENST00000421658 181 ntBASIC1.19□□□□□ -2.22
CHFRQ96EP1 SNORD42B-201ENST00000458893 67 ntBASIC1.19□□□□□ -2.22
CHFRQ96EP1 AC092634.7-201ENST00000621022 103 ntBASIC1.19□□□□□ -2.22
CHFRQ96EP1 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.19□□□□□ -2.22
CHFRQ96EP1 MIR617-201ENST00000385030 97 ntBASIC1.18□□□□□ -2.22
CHFRQ96EP1 RNU1-119P-201ENST00000391122 165 ntBASIC1.18□□□□□ -2.22
CHFRQ96EP1 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.18□□□□□ -2.22
CHFRQ96EP1 MIR3657-201ENST00000584818 117 ntBASIC1.18□□□□□ -2.22
CHFRQ96EP1 MIR4295-201ENST00000585286 85 ntBASIC1.18□□□□□ -2.22
CHFRQ96EP1 AC073869.9-201ENST00000641610 120 ntBASIC1.18□□□□□ -2.22
CHFRQ96EP1 RNU6-668P-201ENST00000364180 107 ntBASIC1.17□□□□□ -2.22
CHFRQ96EP1 RNU6-614P-201ENST00000384369 107 ntBASIC1.17□□□□□ -2.22
CHFRQ96EP1 RNU6-910P-201ENST00000390844 107 ntBASIC1.17□□□□□ -2.22
CHFRQ96EP1 RNU7-104P-201ENST00000459398 79 ntBASIC1.17□□□□□ -2.22
CHFRQ96EP1 SNORD79.1-201ENST00000516069 84 ntBASIC1.17□□□□□ -2.22
CHFRQ96EP1 U6.59-201ENST00000615686 107 ntBASIC1.17□□□□□ -2.22
CHFRQ96EP1 MIR373-201ENST00000362273 69 ntBASIC1.16□□□□□ -2.22
CHFRQ96EP1 Y_RNA.236-201ENST00000364427 111 ntBASIC1.16□□□□□ -2.22
CHFRQ96EP1 RNU6-645P-201ENST00000364649 106 ntBASIC1.16□□□□□ -2.22
CHFRQ96EP1 SNORA25-201ENST00000384384 134 ntBASIC1.16□□□□□ -2.22
CHFRQ96EP1 SNORA80D-201ENST00000384488 135 ntBASIC1.16□□□□□ -2.22
CHFRQ96EP1 MIR100-201ENST00000385259 80 ntBASIC1.16□□□□□ -2.22
CHFRQ96EP1 AC067940.1-201ENST00000458411 300 ntBASIC1.16□□□□□ -2.22
CHFRQ96EP1 AC087343.1-201ENST00000477341 475 ntBASIC1.16□□□□□ -2.22
CHFRQ96EP1 RNA5SP404-201ENST00000517118 132 ntBASIC1.16□□□□□ -2.22
CHFRQ96EP1 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.16□□□□□ -2.22
CHFRQ96EP1 RNU6-1079P-201ENST00000362861 110 ntBASIC1.15□□□□□ -2.23
CHFRQ96EP1 Y_RNA.174-201ENST00000363781 105 ntBASIC1.15□□□□□ -2.23
CHFRQ96EP1 MIR520F-201ENST00000384824 87 ntBASIC1.15□□□□□ -2.23
CHFRQ96EP1 RNU6-994P-201ENST00000410507 111 ntBASIC1.15□□□□□ -2.23
CHFRQ96EP1 MTND4LP1-201ENST00000446263 157 ntBASIC1.15□□□□□ -2.23
CHFRQ96EP1 RNU7-90P-201ENST00000459216 62 ntBASIC1.15□□□□□ -2.23
CHFRQ96EP1 OR2A41P-201ENST00000473586 105 ntBASIC1.15□□□□□ -2.23
CHFRQ96EP1 RNU6-542P-201ENST00000516405 103 ntBASIC1.15□□□□□ -2.23
CHFRQ96EP1 AL136317.1-201ENST00000612653 226 ntBASIC1.15□□□□□ -2.23
CHFRQ96EP1 MIR1-1-201ENST00000362147 71 ntBASIC1.14□□□□□ -2.23
CHFRQ96EP1 RNU6-446P-201ENST00000362827 106 ntBASIC1.14□□□□□ -2.23
CHFRQ96EP1 RNU6-990P-201ENST00000364385 104 ntBASIC1.14□□□□□ -2.23
CHFRQ96EP1 RNA5SP192-201ENST00000364404 120 ntBASIC1.14□□□□□ -2.23
CHFRQ96EP1 RNU6-260P-201ENST00000384092 107 ntBASIC1.14□□□□□ -2.23
CHFRQ96EP1 RNU6V-201ENST00000384105 107 ntBASIC1.14□□□□□ -2.23
CHFRQ96EP1 MIR216B-201ENST00000390186 82 ntBASIC1.14□□□□□ -2.23
CHFRQ96EP1 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC1.14□□□□□ -2.23
CHFRQ96EP1 MIR1827-201ENST00000408549 66 ntBASIC1.14□□□□□ -2.23
CHFRQ96EP1 SNORA25.5-201ENST00000363782 126 ntBASIC1.13□□□□□ -2.23
CHFRQ96EP1 MIR644A-201ENST00000385262 94 ntBASIC1.13□□□□□ -2.23
CHFRQ96EP1 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.13□□□□□ -2.23
CHFRQ96EP1 RNU6-656P-201ENST00000516785 107 ntBASIC1.13□□□□□ -2.23
CHFRQ96EP1 MIR6788-201ENST00000618842 66 ntBASIC1.13□□□□□ -2.23
CHFRQ96EP1 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.13□□□□□ -2.23
CHFRQ96EP1 SNORD12-201ENST00000391002 90 ntBASIC1.12□□□□□ -2.23
CHFRQ96EP1 MIR548J-201ENST00000408833 112 ntBASIC1.12□□□□□ -2.23
CHFRQ96EP1 SCARNA21.1-201ENST00000515996 128 ntBASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 342.9 ms