Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC145423.2-201ENST00000610631 239 ntBASIC-1.26□□□□□ -2.61
HDDC3Q8N4P3 RNY4P6-201ENST00000363667 96 ntBASIC-1.27□□□□□ -2.61
HDDC3Q8N4P3 Y_RNA.220-201ENST00000364244 109 ntBASIC-1.27□□□□□ -2.61
HDDC3Q8N4P3 RNU6-196P-201ENST00000384315 107 ntBASIC-1.27□□□□□ -2.61
HDDC3Q8N4P3 RNU6-86P-201ENST00000606534 107 ntBASIC-1.27□□□□□ -2.61
HDDC3Q8N4P3 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.28□□□□□ -2.61
HDDC3Q8N4P3 Y_RNA.344-201ENST00000365381 112 ntBASIC-1.28□□□□□ -2.61
HDDC3Q8N4P3 RNU6-816P-201ENST00000390914 107 ntBASIC-1.28□□□□□ -2.61
HDDC3Q8N4P3 RNU6-1268P-201ENST00000391214 107 ntBASIC-1.28□□□□□ -2.61
HDDC3Q8N4P3 U3.27-201ENST00000391237 200 ntBASIC-1.28□□□□□ -2.61
HDDC3Q8N4P3 RNU6-1239P-201ENST00000391310 107 ntBASIC-1.28□□□□□ -2.61
HDDC3Q8N4P3 RNU6-502P-201ENST00000362419 108 ntBASIC-1.29□□□□□ -2.62
HDDC3Q8N4P3 RNU6-973P-201ENST00000364690 107 ntBASIC-1.29□□□□□ -2.62
HDDC3Q8N4P3 Y_RNA.353-201ENST00000365440 108 ntBASIC-1.29□□□□□ -2.62
HDDC3Q8N4P3 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-1.29□□□□□ -2.62
HDDC3Q8N4P3 MIR4503-201ENST00000582187 83 ntBASIC-1.29□□□□□ -2.62
HDDC3Q8N4P3 AP001340.1-201ENST00000624405 217 ntBASIC-1.29□□□□□ -2.62
HDDC3Q8N4P3 Y_RNA.484-201ENST00000384389 103 ntBASIC-1.3□□□□□ -2.62
HDDC3Q8N4P3 RNU7-120P-201ENST00000459334 63 ntBASIC-1.3□□□□□ -2.62
HDDC3Q8N4P3 RNU6-1045P-201ENST00000516321 107 ntBASIC-1.3□□□□□ -2.62
HDDC3Q8N4P3 SNORD114-3-201ENST00000364969 75 ntBASIC-1.31□□□□□ -2.62
HDDC3Q8N4P3 MIR582-201ENST00000365731 98 ntBASIC-1.31□□□□□ -2.62
HDDC3Q8N4P3 Y_RNA.452-201ENST00000384202 108 ntBASIC-1.31□□□□□ -2.62
HDDC3Q8N4P3 MIR548E-201ENST00000408287 88 ntBASIC-1.31□□□□□ -2.62
HDDC3Q8N4P3 AL158147.1-201ENST00000443970 75 ntBASIC-1.31□□□□□ -2.62
HDDC3Q8N4P3 RNU6-65P-201ENST00000516332 98 ntBASIC-1.31□□□□□ -2.62
HDDC3Q8N4P3 RNU6-1271P-201ENST00000517049 105 ntBASIC-1.31□□□□□ -2.62
HDDC3Q8N4P3 Y_RNA.371-201ENST00000365591 113 ntBASIC-1.32□□□□□ -2.62
HDDC3Q8N4P3 SNORD116-18-201ENST00000383961 92 ntBASIC-1.32□□□□□ -2.62
HDDC3Q8N4P3 MIR196A1-201ENST00000388006 70 ntBASIC-1.32□□□□□ -2.62
HDDC3Q8N4P3 RNU6-781P-201ENST00000516377 101 ntBASIC-1.32□□□□□ -2.62
HDDC3Q8N4P3 RNU6-682P-201ENST00000363843 106 ntBASIC-1.33□□□□□ -2.62
HDDC3Q8N4P3 Y_RNA.420-201ENST00000384043 110 ntBASIC-1.33□□□□□ -2.62
HDDC3Q8N4P3 MIR518B-201ENST00000385127 83 ntBASIC-1.33□□□□□ -2.62
HDDC3Q8N4P3 MTND3P2-201ENST00000438452 342 ntBASIC-1.33□□□□□ -2.62
HDDC3Q8N4P3 RNU6-881P-201ENST00000516813 102 ntBASIC-1.33□□□□□ -2.62
HDDC3Q8N4P3 U7.2-201ENST00000607576 63 ntBASIC-1.33□□□□□ -2.62
HDDC3Q8N4P3 MTND5P18-201ENST00000445624 1801 ntBASIC-1.33□□□□□ -2.62
HDDC3Q8N4P3 Y_RNA.163-201ENST00000363702 113 ntBASIC-1.34□□□□□ -2.62
HDDC3Q8N4P3 RNA5SP192-201ENST00000364404 120 ntBASIC-1.34□□□□□ -2.62
HDDC3Q8N4P3 RNA5SP461-201ENST00000516451 104 ntBASIC-1.34□□□□□ -2.62
HDDC3Q8N4P3 MIR3179-1-201ENST00000578940 84 ntBASIC-1.34□□□□□ -2.62
HDDC3Q8N4P3 MIR3179-2-201ENST00000579107 84 ntBASIC-1.34□□□□□ -2.62
HDDC3Q8N4P3 MIR3179-3-201ENST00000579566 84 ntBASIC-1.34□□□□□ -2.62
HDDC3Q8N4P3 MIR548X2-201ENST00000579776 100 ntBASIC-1.34□□□□□ -2.62
HDDC3Q8N4P3 MIR4536-1-201ENST00000583537 88 ntBASIC-1.34□□□□□ -2.62
HDDC3Q8N4P3 MIR3179-4-201ENST00000617599 84 ntBASIC-1.34□□□□□ -2.62
HDDC3Q8N4P3 DLEU2_3.1-201ENST00000620005 73 ntBASIC-1.34□□□□□ -2.62
HDDC3Q8N4P3 RNU6-1130P-201ENST00000365434 107 ntBASIC-1.35□□□□□ -2.63
HDDC3Q8N4P3 FGF7P7-201ENST00000514120 227 ntBASIC-1.35□□□□□ -2.63
HDDC3Q8N4P3 SNORA81.3-201ENST00000517283 198 ntBASIC-1.35□□□□□ -2.63
HDDC3Q8N4P3 snoR1.1-201ENST00000628177 80 ntBASIC-1.35□□□□□ -2.63
HDDC3Q8N4P3 Y_RNA.377-201ENST00000365644 108 ntBASIC-1.36□□□□□ -2.63
HDDC3Q8N4P3 AC097510.1-201ENST00000510945 133 ntBASIC-1.36□□□□□ -2.63
HDDC3Q8N4P3 AC025166.1-201ENST00000612411 163 ntBASIC-1.36□□□□□ -2.63
HDDC3Q8N4P3 Y_RNA.162-201ENST00000363683 102 ntBASIC-1.37□□□□□ -2.63
HDDC3Q8N4P3 RNU6-1061P-201ENST00000516530 99 ntBASIC-1.37□□□□□ -2.63
HDDC3Q8N4P3 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-1.37□□□□□ -2.63
HDDC3Q8N4P3 AC025521.1-201ENST00000621624 286 ntBASIC-1.37□□□□□ -2.63
HDDC3Q8N4P3 MIR365A-201ENST00000362260 87 ntBASIC-1.38□□□□□ -2.63
HDDC3Q8N4P3 Y_RNA.555-201ENST00000384673 110 ntBASIC-1.38□□□□□ -2.63
HDDC3Q8N4P3 RNU6-476P-201ENST00000384726 107 ntBASIC-1.38□□□□□ -2.63
HDDC3Q8N4P3 Y_RNA.580-201ENST00000391004 95 ntBASIC-1.38□□□□□ -2.63
HDDC3Q8N4P3 RNU6-1052P-201ENST00000411398 104 ntBASIC-1.38□□□□□ -2.63
HDDC3Q8N4P3 RNU6-75P-201ENST00000515944 104 ntBASIC-1.38□□□□□ -2.63
HDDC3Q8N4P3 RNU6-719P-201ENST00000516671 104 ntBASIC-1.38□□□□□ -2.63
HDDC3Q8N4P3 MIR5704-201ENST00000584029 77 ntBASIC-1.38□□□□□ -2.63
HDDC3Q8N4P3 MIRLET7F1-201ENST00000362202 87 ntBASIC-1.39□□□□□ -2.63
HDDC3Q8N4P3 Y_RNA.29-201ENST00000362570 113 ntBASIC-1.39□□□□□ -2.63
HDDC3Q8N4P3 RNU4-36P-201ENST00000364294 144 ntBASIC-1.39□□□□□ -2.63
HDDC3Q8N4P3 RNU6-200P-201ENST00000364743 107 ntBASIC-1.39□□□□□ -2.63
HDDC3Q8N4P3 RNU6-574P-201ENST00000384265 107 ntBASIC-1.39□□□□□ -2.63
HDDC3Q8N4P3 SNORD83B-201ENST00000386745 93 ntBASIC-1.39□□□□□ -2.63
HDDC3Q8N4P3 SCARNA20.2-201ENST00000516052 116 ntBASIC-1.39□□□□□ -2.63
HDDC3Q8N4P3 SNORD22.1-201ENST00000516331 125 ntBASIC-1.39□□□□□ -2.63
HDDC3Q8N4P3 MIR3115-201ENST00000577915 68 ntBASIC-1.39□□□□□ -2.63
HDDC3Q8N4P3 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-1.39□□□□□ -2.63
HDDC3Q8N4P3 MIR6854-201ENST00000614935 69 ntBASIC-1.39□□□□□ -2.63
HDDC3Q8N4P3 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.4□□□□□ -2.63
HDDC3Q8N4P3 RNU6-24P-201ENST00000384440 107 ntBASIC-1.4□□□□□ -2.63
HDDC3Q8N4P3 SNORD42B-201ENST00000458893 67 ntBASIC-1.4□□□□□ -2.63
HDDC3Q8N4P3 MIR3165-201ENST00000579874 75 ntBASIC-1.4□□□□□ -2.63
HDDC3Q8N4P3 RNU6-694P-201ENST00000364071 147 ntBASIC-1.41□□□□□ -2.64
HDDC3Q8N4P3 Y_RNA.309-201ENST00000365046 111 ntBASIC-1.43□□□□□ -2.64
HDDC3Q8N4P3 SNORD58C-201ENST00000365223 64 ntBASIC-1.43□□□□□ -2.64
HDDC3Q8N4P3 SNORD50.2-201ENST00000365465 70 ntBASIC-1.43□□□□□ -2.64
HDDC3Q8N4P3 MIR577-201ENST00000385196 96 ntBASIC-1.43□□□□□ -2.64
HDDC3Q8N4P3 RNU6-721P-201ENST00000410155 105 ntBASIC-1.43□□□□□ -2.64
HDDC3Q8N4P3 AC022137.1-201ENST00000483735 151 ntBASIC-1.43□□□□□ -2.64
HDDC3Q8N4P3 MIR4694-201ENST00000578534 80 ntBASIC-1.43□□□□□ -2.64
HDDC3Q8N4P3 SNORA63.6-201ENST00000364921 119 ntBASIC-1.44□□□□□ -2.64
HDDC3Q8N4P3 Y_RNA.8-201ENST00000362353 102 ntBASIC-1.45□□□□□ -2.64
HDDC3Q8N4P3 MIR548U-201ENST00000390728 81 ntBASIC-1.45□□□□□ -2.64
HDDC3Q8N4P3 MIR1285-2-201ENST00000408311 88 ntBASIC-1.45□□□□□ -2.64
HDDC3Q8N4P3 RNU6-1064P-201ENST00000410626 104 ntBASIC-1.45□□□□□ -2.64
HDDC3Q8N4P3 MIR4441-201ENST00000582623 100 ntBASIC-1.45□□□□□ -2.64
HDDC3Q8N4P3 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-1.45□□□□□ -2.64
HDDC3Q8N4P3 MIR6773-201ENST00000612812 74 ntBASIC-1.45□□□□□ -2.64
HDDC3Q8N4P3 SNORD74.6-201ENST00000364796 70 ntBASIC-1.46□□□□□ -2.64
HDDC3Q8N4P3 Y_RNA.346-201ENST00000365385 112 ntBASIC-1.46□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 222.2 ms