Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 AC025521.1-201ENST00000621624 286 ntBASIC-3.06□□□□□ -2.9
HIST1H1AQ02539 Y_RNA.789-201ENST00000622480 102 ntBASIC-3.06□□□□□ -2.9
HIST1H1AQ02539 RNU2-16P-201ENST00000410712 136 ntBASIC-3.07□□□□□ -2.9
HIST1H1AQ02539 AC078883.4-201ENST00000623218 367 ntBASIC-3.07□□□□□ -2.9
HIST1H1AQ02539 RNU6-1051P-201ENST00000365471 102 ntBASIC-3.08□□□□□ -2.9
HIST1H1AQ02539 SNORD116-2-201ENST00000384274 95 ntBASIC-3.08□□□□□ -2.9
HIST1H1AQ02539 RNU6-246P-201ENST00000384702 107 ntBASIC-3.08□□□□□ -2.9
HIST1H1AQ02539 MIR521-2-201ENST00000384818 87 ntBASIC-3.08□□□□□ -2.9
HIST1H1AQ02539 Y_RNA.591-201ENST00000410228 104 ntBASIC-3.08□□□□□ -2.9
HIST1H1AQ02539 RNU6-508P-201ENST00000363231 103 ntBASIC-3.09□□□□□ -2.9
HIST1H1AQ02539 MT-TM-201ENST00000387377 68 ntBASIC-3.09□□□□□ -2.9
HIST1H1AQ02539 MIR759-201ENST00000390224 91 ntBASIC-3.09□□□□□ -2.9
HIST1H1AQ02539 RNU6-1174P-201ENST00000517278 101 ntBASIC-3.09□□□□□ -2.9
HIST1H1AQ02539 MIR3064-201ENST00000581130 66 ntBASIC-3.09□□□□□ -2.9
HIST1H1AQ02539 MTND4LP32-201ENST00000636111 270 ntBASIC-3.09□□□□□ -2.9
HIST1H1AQ02539 RNU6-363P-201ENST00000362895 105 ntBASIC-3.1□□□□□ -2.91
HIST1H1AQ02539 Y_RNA.259-201ENST00000364619 101 ntBASIC-3.1□□□□□ -2.91
HIST1H1AQ02539 MIR1302-11-201ENST00000408051 138 ntBASIC-3.1□□□□□ -2.91
HIST1H1AQ02539 MIR1302-9-201ENST00000408365 138 ntBASIC-3.1□□□□□ -2.91
HIST1H1AQ02539 MIR1302-10-201ENST00000408734 138 ntBASIC-3.1□□□□□ -2.91
HIST1H1AQ02539 SCARNA24.2-201ENST00000516968 130 ntBASIC-3.1□□□□□ -2.91
HIST1H1AQ02539 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC-3.1□□□□□ -2.91
HIST1H1AQ02539 MIR1302-2-201ENST00000607096 138 ntBASIC-3.1□□□□□ -2.91
HIST1H1AQ02539 Y_RNA.44-201ENST00000362676 108 ntBASIC-3.11□□□□□ -2.91
HIST1H1AQ02539 SNORD116-1-201ENST00000384335 95 ntBASIC-3.11□□□□□ -2.91
HIST1H1AQ02539 AL021921.1-201ENST00000442774 93 ntBASIC-3.11□□□□□ -2.91
HIST1H1AQ02539 Y_RNA.797-201ENST00000515977 94 ntBASIC-3.11□□□□□ -2.91
HIST1H1AQ02539 AC113139.1-201ENST00000605049 239 ntBASIC-3.11□□□□□ -2.91
HIST1H1AQ02539 AL442128.1-201ENST00000615151 90 ntBASIC-3.11□□□□□ -2.91
HIST1H1AQ02539 Y_RNA.248-201ENST00000364501 109 ntBASIC-3.12□□□□□ -2.91
HIST1H1AQ02539 Y_RNA.529-201ENST00000384586 119 ntBASIC-3.12□□□□□ -2.91
HIST1H1AQ02539 RNU2-38P-201ENST00000410856 79 ntBASIC-3.12□□□□□ -2.91
HIST1H1AQ02539 MIR3688-2-201ENST00000636963 87 ntBASIC-3.12□□□□□ -2.91
HIST1H1AQ02539 MIR4773-1-201ENST00000637203 78 ntBASIC-3.12□□□□□ -2.91
HIST1H1AQ02539 RNU6-309P-201ENST00000364573 106 ntBASIC-3.13□□□□□ -2.91
HIST1H1AQ02539 Y_RNA.403-201ENST00000383977 101 ntBASIC-3.13□□□□□ -2.91
HIST1H1AQ02539 MTND1P29-201ENST00000448112 647 ntBASIC-3.13□□□□□ -2.91
HIST1H1AQ02539 AC104996.3-201ENST00000590718 94 ntBASIC-3.13□□□□□ -2.91
HIST1H1AQ02539 U6.106-201ENST00000636360 105 ntBASIC-3.13□□□□□ -2.91
HIST1H1AQ02539 SNORD18B-201ENST00000365659 72 ntBASIC-3.14□□□□□ -2.91
HIST1H1AQ02539 SNORD116-29-201ENST00000384516 83 ntBASIC-3.14□□□□□ -2.91
HIST1H1AQ02539 RNU6-768P-201ENST00000384683 107 ntBASIC-3.14□□□□□ -2.91
HIST1H1AQ02539 Y_RNA.590-201ENST00000410140 107 ntBASIC-3.14□□□□□ -2.91
HIST1H1AQ02539 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC-3.14□□□□□ -2.91
HIST1H1AQ02539 MIR548AG1-201ENST00000579932 66 ntBASIC-3.14□□□□□ -2.91
HIST1H1AQ02539 Y_RNA.262-201ENST00000364641 102 ntBASIC-3.15□□□□□ -2.91
HIST1H1AQ02539 RNY4P28-201ENST00000365281 93 ntBASIC-3.15□□□□□ -2.91
HIST1H1AQ02539 RNU6-1271P-201ENST00000517049 105 ntBASIC-3.15□□□□□ -2.91
HIST1H1AQ02539 Y_RNA.166-201ENST00000363730 102 ntBASIC-3.16□□□□□ -2.92
HIST1H1AQ02539 Y_RNA.449-201ENST00000384187 102 ntBASIC-3.16□□□□□ -2.92
HIST1H1AQ02539 RNU6-1009P-201ENST00000390996 107 ntBASIC-3.16□□□□□ -2.92
HIST1H1AQ02539 RNU6-1338P-201ENST00000516328 91 ntBASIC-3.16□□□□□ -2.92
HIST1H1AQ02539 MIR4282-201ENST00000583613 67 ntBASIC-3.16□□□□□ -2.92
HIST1H1AQ02539 Y_RNA.182-201ENST00000363880 111 ntBASIC-3.17□□□□□ -2.92
HIST1H1AQ02539 RNY4P7-201ENST00000364600 96 ntBASIC-3.17□□□□□ -2.92
HIST1H1AQ02539 Y_RNA.315-201ENST00000365117 102 ntBASIC-3.17□□□□□ -2.92
HIST1H1AQ02539 RNU6-409P-201ENST00000384114 104 ntBASIC-3.17□□□□□ -2.92
HIST1H1AQ02539 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-3.17□□□□□ -2.92
HIST1H1AQ02539 AC002553.4-201ENST00000616896 331 ntBASIC-3.17□□□□□ -2.92
HIST1H1AQ02539 RNA5SP93-201ENST00000362525 114 ntBASIC-3.18□□□□□ -2.92
HIST1H1AQ02539 Y_RNA.155-201ENST00000363632 101 ntBASIC-3.18□□□□□ -2.92
HIST1H1AQ02539 Y_RNA.187-201ENST00000363918 113 ntBASIC-3.18□□□□□ -2.92
HIST1H1AQ02539 MT-TW-201ENST00000387382 68 ntBASIC-3.18□□□□□ -2.92
HIST1H1AQ02539 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-3.18□□□□□ -2.92
HIST1H1AQ02539 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC-3.18□□□□□ -2.92
HIST1H1AQ02539 AL691482.2-201ENST00000457453 84 ntBASIC-3.18□□□□□ -2.92
HIST1H1AQ02539 SNORA40.15-201ENST00000516884 107 ntBASIC-3.18□□□□□ -2.92
HIST1H1AQ02539 Y_RNA.718-201ENST00000517110 102 ntBASIC-3.18□□□□□ -2.92
HIST1H1AQ02539 Y_RNA.53-201ENST00000362765 102 ntBASIC-3.19□□□□□ -2.92
HIST1H1AQ02539 RNU6-258P-201ENST00000390884 101 ntBASIC-3.19□□□□□ -2.92
HIST1H1AQ02539 Y_RNA.690-201ENST00000516603 95 ntBASIC-3.19□□□□□ -2.92
HIST1H1AQ02539 MIR23C-201ENST00000579846 100 ntBASIC-3.19□□□□□ -2.92
HIST1H1AQ02539 TARS-215ENST00000626210 201 ntTSL 5 BASIC-3.19□□□□□ -2.92
HIST1H1AQ02539 RNU6-824P-201ENST00000363724 104 ntBASIC-3.2□□□□□ -2.92
HIST1H1AQ02539 RNU6-770P-201ENST00000363929 105 ntBASIC-3.2□□□□□ -2.92
HIST1H1AQ02539 RNU6-608P-201ENST00000383927 104 ntBASIC-3.2□□□□□ -2.92
HIST1H1AQ02539 RNY3P15-201ENST00000516297 97 ntBASIC-3.2□□□□□ -2.92
HIST1H1AQ02539 RNU6-62P-201ENST00000516526 102 ntBASIC-3.2□□□□□ -2.92
HIST1H1AQ02539 AL513043.2-201ENST00000573941 143 ntBASIC-3.2□□□□□ -2.92
HIST1H1AQ02539 MIR6739-201ENST00000622461 75 ntBASIC-3.2□□□□□ -2.92
HIST1H1AQ02539 Y_RNA.163-201ENST00000363702 113 ntBASIC-3.21□□□□□ -2.92
HIST1H1AQ02539 SNORD90-201ENST00000391145 111 ntBASIC-3.21□□□□□ -2.92
HIST1H1AQ02539 SNORA75.5-201ENST00000391291 81 ntBASIC-3.21□□□□□ -2.92
HIST1H1AQ02539 MIR3149-201ENST00000584629 83 ntBASIC-3.21□□□□□ -2.92
HIST1H1AQ02539 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC-3.21□□□□□ -2.92
HIST1H1AQ02539 Y_RNA.84-201ENST00000363011 104 ntBASIC-3.22□□□□□ -2.92
HIST1H1AQ02539 RNU6-478P-201ENST00000363904 110 ntBASIC-3.22□□□□□ -2.92
HIST1H1AQ02539 MTATP6P29-201ENST00000415057 132 ntBASIC-3.22□□□□□ -2.92
HIST1H1AQ02539 MIR466-201ENST00000580653 84 ntBASIC-3.22□□□□□ -2.92
HIST1H1AQ02539 Y_RNA.19-201ENST00000362462 99 ntBASIC-3.23□□□□□ -2.93
HIST1H1AQ02539 Y_RNA.213-201ENST00000364178 111 ntBASIC-3.23□□□□□ -2.93
HIST1H1AQ02539 Y_RNA.344-201ENST00000365381 112 ntBASIC-3.23□□□□□ -2.93
HIST1H1AQ02539 MIR548D2-201ENST00000384955 97 ntBASIC-3.23□□□□□ -2.93
HIST1H1AQ02539 MIR1252-201ENST00000408861 65 ntBASIC-3.23□□□□□ -2.93
HIST1H1AQ02539 RNU7-152P-201ENST00000458982 64 ntBASIC-3.23□□□□□ -2.93
HIST1H1AQ02539 RNU6-563P-201ENST00000364872 108 ntBASIC-3.24□□□□□ -2.93
HIST1H1AQ02539 Y_RNA.507-201ENST00000384500 99 ntBASIC-3.24□□□□□ -2.93
HIST1H1AQ02539 AC120024.2-201ENST00000576526 175 ntBASIC-3.24□□□□□ -2.93
HIST1H1AQ02539 MIR3974-201ENST00000637126 96 ntBASIC-3.24□□□□□ -2.93
HIST1H1AQ02539 Y_RNA.198-201ENST00000364013 98 ntBASIC-3.25□□□□□ -2.93
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms