Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 SNORA24B-201ENST00000384176 131 ntBASIC1.07□□□□□ -2.24
NKX3-2P78367 SCARNA18B-201ENST00000458806 135 ntBASIC1.07□□□□□ -2.24
NKX3-2P78367 AC011195.1-201ENST00000578177 177 ntBASIC1.07□□□□□ -2.24
NKX3-2P78367 MIR4484-201ENST00000582855 83 ntBASIC1.07□□□□□ -2.24
NKX3-2P78367 MIR4639-201ENST00000584938 69 ntBASIC1.07□□□□□ -2.24
NKX3-2P78367 AC145423.2-201ENST00000610631 239 ntBASIC1.07□□□□□ -2.24
NKX3-2P78367 AC067863.3-201ENST00000624172 122 ntBASIC1.07□□□□□ -2.24
NKX3-2P78367 Y_RNA.12-201ENST00000362393 112 ntBASIC1.06□□□□□ -2.24
NKX3-2P78367 Y_RNA.264-201ENST00000364665 102 ntBASIC1.06□□□□□ -2.24
NKX3-2P78367 RNU6-1057P-201ENST00000517162 102 ntBASIC1.06□□□□□ -2.24
NKX3-2P78367 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.06□□□□□ -2.24
NKX3-2P78367 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
NKX3-2P78367 AC244098.3-201ENST00000424803 96 ntBASIC1.05□□□□□ -2.24
NKX3-2P78367 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.05□□□□□ -2.24
NKX3-2P78367 RNA5SP436-201ENST00000516020 115 ntBASIC1.05□□□□□ -2.24
NKX3-2P78367 RNU6-135P-201ENST00000516769 101 ntBASIC1.05□□□□□ -2.24
NKX3-2P78367 RNA5SP47-201ENST00000517230 109 ntBASIC1.05□□□□□ -2.24
NKX3-2P78367 Y_RNA.371-201ENST00000365591 113 ntBASIC1.04□□□□□ -2.24
NKX3-2P78367 RNU6-1296P-201ENST00000383879 107 ntBASIC1.04□□□□□ -2.24
NKX3-2P78367 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
NKX3-2P78367 U7.4-201ENST00000614961 63 ntBASIC1.04□□□□□ -2.24
NKX3-2P78367 MIR6779-201ENST00000617283 64 ntBASIC1.04□□□□□ -2.24
NKX3-2P78367 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.04□□□□□ -2.24
NKX3-2P78367 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.03□□□□□ -2.24
NKX3-2P78367 MIR18A-201ENST00000362310 71 ntBASIC1.03□□□□□ -2.24
NKX3-2P78367 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
NKX3-2P78367 MIR617-201ENST00000385030 97 ntBASIC1.03□□□□□ -2.24
NKX3-2P78367 MIR519E-201ENST00000385075 84 ntBASIC1.03□□□□□ -2.24
NKX3-2P78367 RNU6-380P-201ENST00000410207 107 ntBASIC1.03□□□□□ -2.24
NKX3-2P78367 YWHAEP2-201ENST00000580066 112 ntBASIC1.03□□□□□ -2.24
NKX3-2P78367 YWHAEP3-201ENST00000582767 121 ntBASIC1.03□□□□□ -2.24
NKX3-2P78367 RNU6-824P-201ENST00000363724 104 ntBASIC1.02□□□□□ -2.25
NKX3-2P78367 RNU6-716P-201ENST00000365621 103 ntBASIC1.02□□□□□ -2.25
NKX3-2P78367 RNU6-303P-201ENST00000517091 106 ntBASIC1.02□□□□□ -2.25
NKX3-2P78367 RNU6-726P-201ENST00000364680 107 ntBASIC1.01□□□□□ -2.25
NKX3-2P78367 SNORD41.1-201ENST00000391000 69 ntBASIC1.01□□□□□ -2.25
NKX3-2P78367 U3.27-201ENST00000391237 200 ntBASIC1.01□□□□□ -2.25
NKX3-2P78367 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.01□□□□□ -2.25
NKX3-2P78367 MIR3134-201ENST00000579433 74 ntBASIC1.01□□□□□ -2.25
NKX3-2P78367 FAS-AS1.1-201ENST00000615327 126 ntBASIC1.01□□□□□ -2.25
NKX3-2P78367 RNU6-340P-201ENST00000364005 107 ntBASIC1□□□□□ -2.25
NKX3-2P78367 Y_RNA.258-201ENST00000364613 105 ntBASIC1□□□□□ -2.25
NKX3-2P78367 MIR548L-201ENST00000408303 86 ntBASIC1□□□□□ -2.25
NKX3-2P78367 AC074348.1-201ENST00000426503 132 ntBASIC1□□□□□ -2.25
NKX3-2P78367 AC097510.1-201ENST00000510945 133 ntBASIC1□□□□□ -2.25
NKX3-2P78367 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1□□□□□ -2.25
NKX3-2P78367 AC103810.9-201ENST00000606688 112 ntBASIC1□□□□□ -2.25
NKX3-2P78367 RNU6-330P-201ENST00000363015 107 ntBASIC0.99□□□□□ -2.25
NKX3-2P78367 RNU6-1177P-201ENST00000391058 104 ntBASIC0.99□□□□□ -2.25
NKX3-2P78367 SCARNA16.5-201ENST00000517114 183 ntBASIC0.99□□□□□ -2.25
NKX3-2P78367 AL353765.1-201ENST00000605514 183 ntBASIC0.99□□□□□ -2.25
NKX3-2P78367 MIR664A-201ENST00000626086 82 ntBASIC0.99□□□□□ -2.25
NKX3-2P78367 Y_RNA.36-201ENST00000362602 112 ntBASIC0.98□□□□□ -2.25
NKX3-2P78367 SNORA36.1-201ENST00000363424 132 ntBASIC0.98□□□□□ -2.25
NKX3-2P78367 Y_RNA.565-201ENST00000384719 101 ntBASIC0.98□□□□□ -2.25
NKX3-2P78367 RNU2-59P-201ENST00000410482 191 ntBASIC0.98□□□□□ -2.25
NKX3-2P78367 RNA5SP222-201ENST00000411039 105 ntBASIC0.98□□□□□ -2.25
NKX3-2P78367 RNU6-807P-201ENST00000516805 107 ntBASIC0.98□□□□□ -2.25
NKX3-2P78367 MIR4661-201ENST00000582720 75 ntBASIC0.98□□□□□ -2.25
NKX3-2P78367 Y_RNA.606-201ENST00000410579 103 ntBASIC0.97□□□□□ -2.25
NKX3-2P78367 U6.81-201ENST00000612550 106 ntBASIC0.97□□□□□ -2.25
NKX3-2P78367 MIR1297-201ENST00000637311 77 ntBASIC0.97□□□□□ -2.25
NKX3-2P78367 RNU6-1187P-201ENST00000364771 110 ntBASIC0.96□□□□□ -2.26
NKX3-2P78367 RNY1P8-201ENST00000383970 114 ntBASIC0.96□□□□□ -2.26
NKX3-2P78367 RNU6-154P-201ENST00000384306 106 ntBASIC0.96□□□□□ -2.26
NKX3-2P78367 RNU6-269P-201ENST00000391077 97 ntBASIC0.96□□□□□ -2.26
NKX3-2P78367 RNU6-523P-201ENST00000516304 54 ntBASIC0.96□□□□□ -2.26
NKX3-2P78367 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.96□□□□□ -2.26
NKX3-2P78367 MIR6828-201ENST00000636181 60 ntBASIC0.96□□□□□ -2.26
NKX3-2P78367 RNU6-382P-201ENST00000365181 106 ntBASIC0.95□□□□□ -2.26
NKX3-2P78367 AC093423.1-201ENST00000440817 142 ntBASIC0.95□□□□□ -2.26
NKX3-2P78367 RNA5SP94-201ENST00000516917 108 ntBASIC0.95□□□□□ -2.26
NKX3-2P78367 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.95□□□□□ -2.26
NKX3-2P78367 MIR4698-201ENST00000577795 80 ntBASIC0.95□□□□□ -2.26
NKX3-2P78367 MIR548O2-201ENST00000616090 70 ntBASIC0.95□□□□□ -2.26
NKX3-2P78367 MIR4773-1-201ENST00000637203 78 ntBASIC0.95□□□□□ -2.26
NKX3-2P78367 RNU6-70P-201ENST00000516438 60 ntBASIC0.94□□□□□ -2.26
NKX3-2P78367 RNU6-54P-201ENST00000365563 107 ntBASIC0.93□□□□□ -2.26
NKX3-2P78367 RNU7-74P-201ENST00000459104 62 ntBASIC0.93□□□□□ -2.26
NKX3-2P78367 RNA5SP227-201ENST00000516184 113 ntBASIC0.93□□□□□ -2.26
NKX3-2P78367 MIR4714-201ENST00000580728 77 ntBASIC0.93□□□□□ -2.26
NKX3-2P78367 RN7SL793P-201ENST00000583259 296 ntBASIC0.93□□□□□ -2.26
NKX3-2P78367 RNU6-681P-201ENST00000364012 104 ntBASIC0.92□□□□□ -2.26
NKX3-2P78367 RNU6V-201ENST00000384105 107 ntBASIC0.92□□□□□ -2.26
NKX3-2P78367 MIR216B-201ENST00000390186 82 ntBASIC0.92□□□□□ -2.26
NKX3-2P78367 RNA5SP268-201ENST00000516828 124 ntBASIC0.92□□□□□ -2.26
NKX3-2P78367 NAMPTP3-201ENST00000569273 224 ntBASIC0.92□□□□□ -2.26
NKX3-2P78367 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
NKX3-2P78367 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.91□□□□□ -2.26
NKX3-2P78367 RNU1-141P-201ENST00000364623 158 ntBASIC0.91□□□□□ -2.26
NKX3-2P78367 RNU4-45P-201ENST00000365469 141 ntBASIC0.91□□□□□ -2.26
NKX3-2P78367 Y_RNA.545-201ENST00000384652 105 ntBASIC0.91□□□□□ -2.26
NKX3-2P78367 ACA64.5-201ENST00000516207 127 ntBASIC0.91□□□□□ -2.26
NKX3-2P78367 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.91□□□□□ -2.26
NKX3-2P78367 AL162376.1-201ENST00000624117 175 ntBASIC0.91□□□□□ -2.26
NKX3-2P78367 RNU6-495P-201ENST00000362995 107 ntBASIC0.9□□□□□ -2.27
NKX3-2P78367 SNORA36.2-201ENST00000384004 127 ntBASIC0.9□□□□□ -2.27
NKX3-2P78367 SNORA8.1-201ENST00000384250 140 ntBASIC0.9□□□□□ -2.27
NKX3-2P78367 SNORA8.2-201ENST00000384372 139 ntBASIC0.9□□□□□ -2.27
NKX3-2P78367 RNU6-411P-201ENST00000384451 107 ntBASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 168.1 ms