Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 AC244098.3-201ENST00000424803 96 ntBASIC1.28□□□□□ -2.2
EPHB3P54753 RNU6-135P-201ENST00000516769 101 ntBASIC1.28□□□□□ -2.2
EPHB3P54753 AL078603.1-201ENST00000603824 313 ntBASIC1.28□□□□□ -2.2
EPHB3P54753 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
EPHB3P54753 RNU6-495P-201ENST00000362995 107 ntBASIC1.27□□□□□ -2.21
EPHB3P54753 Y_RNA.224-201ENST00000364308 111 ntBASIC1.27□□□□□ -2.21
EPHB3P54753 RNU7-104P-201ENST00000459398 79 ntBASIC1.27□□□□□ -2.21
EPHB3P54753 AC002350.1-201ENST00000490759 375 ntBASIC1.27□□□□□ -2.21
EPHB3P54753 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.27□□□□□ -2.21
EPHB3P54753 MIR548O2-201ENST00000616090 70 ntBASIC1.27□□□□□ -2.21
EPHB3P54753 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.27□□□□□ -2.21
EPHB3P54753 SNORA25.4-201ENST00000363666 124 ntBASIC1.26□□□□□ -2.21
EPHB3P54753 Y_RNA.443-201ENST00000384135 111 ntBASIC1.26□□□□□ -2.21
EPHB3P54753 MIR519E-201ENST00000385075 84 ntBASIC1.26□□□□□ -2.21
EPHB3P54753 RNU6-1110P-201ENST00000516462 101 ntBASIC1.26□□□□□ -2.21
EPHB3P54753 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.26□□□□□ -2.21
EPHB3P54753 SNORD113.1-201ENST00000363280 73 ntBASIC1.25□□□□□ -2.21
EPHB3P54753 SNORA25-201ENST00000384384 134 ntBASIC1.25□□□□□ -2.21
EPHB3P54753 SNORD116-24-201ENST00000384549 92 ntBASIC1.25□□□□□ -2.21
EPHB3P54753 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
EPHB3P54753 RNU6-630P-201ENST00000391258 106 ntBASIC1.25□□□□□ -2.21
EPHB3P54753 AC068338.1-201ENST00000565567 176 ntBASIC1.25□□□□□ -2.21
EPHB3P54753 MIR4452-201ENST00000583004 71 ntBASIC1.25□□□□□ -2.21
EPHB3P54753 MIR4639-201ENST00000584938 69 ntBASIC1.25□□□□□ -2.21
EPHB3P54753 AL136317.1-201ENST00000612653 226 ntBASIC1.25□□□□□ -2.21
EPHB3P54753 AC067863.3-201ENST00000624172 122 ntBASIC1.25□□□□□ -2.21
EPHB3P54753 RNU6-1216P-201ENST00000362590 107 ntBASIC1.24□□□□□ -2.21
EPHB3P54753 SNORA25.8-201ENST00000364831 128 ntBASIC1.24□□□□□ -2.21
EPHB3P54753 Y_RNA.355-201ENST00000365462 98 ntBASIC1.24□□□□□ -2.21
EPHB3P54753 MIR222-201ENST00000384992 110 ntBASIC1.24□□□□□ -2.21
EPHB3P54753 SNORD41.1-201ENST00000391000 69 ntBASIC1.24□□□□□ -2.21
EPHB3P54753 MIR618-201ENST00000385287 98 ntBASIC1.23□□□□□ -2.21
EPHB3P54753 AL691482.2-201ENST00000457453 84 ntBASIC1.23□□□□□ -2.21
EPHB3P54753 RNU7-74P-201ENST00000459104 62 ntBASIC1.23□□□□□ -2.21
EPHB3P54753 MIR4295-201ENST00000585286 85 ntBASIC1.23□□□□□ -2.21
EPHB3P54753 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.23□□□□□ -2.21
EPHB3P54753 RNA5SP117-201ENST00000365294 118 ntBASIC1.22□□□□□ -2.21
EPHB3P54753 RNU6-1039P-201ENST00000383931 107 ntBASIC1.22□□□□□ -2.21
EPHB3P54753 SNORD28-201ENST00000384706 75 ntBASIC1.22□□□□□ -2.21
EPHB3P54753 MIR19B1-201ENST00000384829 87 ntBASIC1.22□□□□□ -2.21
EPHB3P54753 MIR644A-201ENST00000385262 94 ntBASIC1.22□□□□□ -2.21
EPHB3P54753 AC093423.1-201ENST00000440817 142 ntBASIC1.22□□□□□ -2.21
EPHB3P54753 U7.7-201ENST00000459276 60 ntBASIC1.22□□□□□ -2.21
EPHB3P54753 AC087343.1-201ENST00000477341 475 ntBASIC1.22□□□□□ -2.21
EPHB3P54753 SNORD114-22-201ENST00000365423 72 ntBASIC1.21□□□□□ -2.22
EPHB3P54753 SNORD105-201ENST00000386910 85 ntBASIC1.21□□□□□ -2.22
EPHB3P54753 FABP5P4-201ENST00000437203 171 ntBASIC1.21□□□□□ -2.22
EPHB3P54753 AC244669.1-204ENST00000621564 178 ntBASIC1.21□□□□□ -2.22
EPHB3P54753 RNU6-54P-201ENST00000365563 107 ntBASIC1.2□□□□□ -2.22
EPHB3P54753 SNORD89-201ENST00000390981 114 ntBASIC1.2□□□□□ -2.22
EPHB3P54753 NAMPTP3-201ENST00000569273 224 ntBASIC1.2□□□□□ -2.22
EPHB3P54753 MIR96-201ENST00000362288 78 ntBASIC1.19□□□□□ -2.22
EPHB3P54753 RNU6-469P-201ENST00000516253 101 ntBASIC1.19□□□□□ -2.22
EPHB3P54753 RNA5SP404-201ENST00000517118 132 ntBASIC1.19□□□□□ -2.22
EPHB3P54753 MIR4511-201ENST00000582784 87 ntBASIC1.19□□□□□ -2.22
EPHB3P54753 SNORD18A-201ENST00000363753 72 ntBASIC1.18□□□□□ -2.22
EPHB3P54753 SNORD114-27-201ENST00000363766 70 ntBASIC1.18□□□□□ -2.22
EPHB3P54753 RNU1-124P-201ENST00000363861 145 ntBASIC1.18□□□□□ -2.22
EPHB3P54753 RNA5SP47-201ENST00000517230 109 ntBASIC1.18□□□□□ -2.22
EPHB3P54753 MIR6509-201ENST00000614603 85 ntBASIC1.18□□□□□ -2.22
EPHB3P54753 AC103706.3-201ENST00000636297 85 ntBASIC1.18□□□□□ -2.22
EPHB3P54753 AC073869.9-201ENST00000641610 120 ntBASIC1.18□□□□□ -2.22
EPHB3P54753 RNU6-726P-201ENST00000364680 107 ntBASIC1.17□□□□□ -2.22
EPHB3P54753 RNU6V-201ENST00000384105 107 ntBASIC1.17□□□□□ -2.22
EPHB3P54753 RNU6-939P-201ENST00000384634 107 ntBASIC1.17□□□□□ -2.22
EPHB3P54753 MIR200A-201ENST00000384875 90 ntBASIC1.17□□□□□ -2.22
EPHB3P54753 MIR573-201ENST00000384964 99 ntBASIC1.17□□□□□ -2.22
EPHB3P54753 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.16□□□□□ -2.22
EPHB3P54753 MT-TY-201ENST00000387409 66 ntBASIC1.16□□□□□ -2.22
EPHB3P54753 SNORD42B-201ENST00000458893 67 ntBASIC1.16□□□□□ -2.22
EPHB3P54753 RNU6-982P-201ENST00000516216 102 ntBASIC1.16□□□□□ -2.22
EPHB3P54753 RNU1-93P-201ENST00000364704 169 ntBASIC1.15□□□□□ -2.23
EPHB3P54753 MIR489-201ENST00000384923 84 ntBASIC1.15□□□□□ -2.23
EPHB3P54753 MIR7-2-201ENST00000384970 110 ntBASIC1.15□□□□□ -2.23
EPHB3P54753 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.15□□□□□ -2.23
EPHB3P54753 MIR3657-201ENST00000584818 117 ntBASIC1.15□□□□□ -2.23
EPHB3P54753 RNU6-669P-201ENST00000365575 107 ntBASIC1.14□□□□□ -2.23
EPHB3P54753 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.13□□□□□ -2.23
EPHB3P54753 MIR9-2-201ENST00000384838 87 ntBASIC1.13□□□□□ -2.23
EPHB3P54753 MIR548L-201ENST00000408303 86 ntBASIC1.13□□□□□ -2.23
EPHB3P54753 MTND4LP1-201ENST00000446263 157 ntBASIC1.13□□□□□ -2.23
EPHB3P54753 SCARNA16.5-201ENST00000517114 183 ntBASIC1.13□□□□□ -2.23
EPHB3P54753 MIR3678-201ENST00000578455 94 ntBASIC1.13□□□□□ -2.23
EPHB3P54753 MIR3612-201ENST00000579753 87 ntBASIC1.13□□□□□ -2.23
EPHB3P54753 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.13□□□□□ -2.23
EPHB3P54753 RNU1-141P-201ENST00000364623 158 ntBASIC1.12□□□□□ -2.23
EPHB3P54753 RNU6-260P-201ENST00000384092 107 ntBASIC1.12□□□□□ -2.23
EPHB3P54753 MIR203A-201ENST00000384836 110 ntBASIC1.12□□□□□ -2.23
EPHB3P54753 snoU13.18-201ENST00000459483 104 ntBASIC1.12□□□□□ -2.23
EPHB3P54753 SNORD124-201ENST00000459577 104 ntBASIC1.12□□□□□ -2.23
EPHB3P54753 RNA5SP220-201ENST00000516298 104 ntBASIC1.12□□□□□ -2.23
EPHB3P54753 SNORA40.17-201ENST00000517256 115 ntBASIC1.12□□□□□ -2.23
EPHB3P54753 MIR4460-201ENST00000577862 86 ntBASIC1.12□□□□□ -2.23
EPHB3P54753 AC025627.3-201ENST00000582078 182 ntBASIC1.12□□□□□ -2.23
EPHB3P54753 AL109933.3-201ENST00000619095 188 ntBASIC1.12□□□□□ -2.23
EPHB3P54753 MIR6828-201ENST00000636181 60 ntBASIC1.12□□□□□ -2.23
EPHB3P54753 SNORA2.1-201ENST00000363089 137 ntBASIC1.11□□□□□ -2.23
EPHB3P54753 RNU6-1187P-201ENST00000364771 110 ntBASIC1.11□□□□□ -2.23
EPHB3P54753 RNU6-1335P-201ENST00000365426 107 ntBASIC1.11□□□□□ -2.23
EPHB3P54753 RNU6-42P-201ENST00000384165 107 ntBASIC1.11□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 210.8 ms