Protein–RNA interactions for Protein: P35625

TIMP3, Metalloproteinase inhibitor 3, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP3P35625 MIR5087-201ENST00000635826 76 ntBASIC0.45□□□□□ -2.34
TIMP3P35625 RNY1P1-201ENST00000364372 112 ntBASIC0.44□□□□□ -2.34
TIMP3P35625 MIR519E-201ENST00000385075 84 ntBASIC0.44□□□□□ -2.34
TIMP3P35625 AC098934.3-201ENST00000430450 190 ntBASIC0.44□□□□□ -2.34
TIMP3P35625 AL157398.1-201ENST00000452981 186 ntBASIC0.44□□□□□ -2.34
TIMP3P35625 RNU6-229P-201ENST00000516614 102 ntBASIC0.44□□□□□ -2.34
TIMP3P35625 SNORD115-37-201ENST00000363768 82 ntBASIC0.43□□□□□ -2.34
TIMP3P35625 MIR450A2-201ENST00000385022 100 ntBASIC0.43□□□□□ -2.34
TIMP3P35625 AC114737.2-201ENST00000421583 173 ntBASIC0.43□□□□□ -2.34
TIMP3P35625 AC069271.1-201ENST00000445577 156 ntBASIC0.43□□□□□ -2.34
TIMP3P35625 RN7SKP12-201ENST00000516275 143 ntBASIC0.43□□□□□ -2.34
TIMP3P35625 RNU7-153P-201ENST00000516455 62 ntBASIC0.43□□□□□ -2.34
TIMP3P35625 MIR1273G-201ENST00000577677 100 ntBASIC0.43□□□□□ -2.34
TIMP3P35625 MIR4796-201ENST00000580742 81 ntBASIC0.43□□□□□ -2.34
TIMP3P35625 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.43□□□□□ -2.34
TIMP3P35625 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.43□□□□□ -2.34
TIMP3P35625 MIR451A-201ENST00000385059 72 ntBASIC0.42□□□□□ -2.34
TIMP3P35625 Y_RNA.611-201ENST00000410682 108 ntBASIC0.42□□□□□ -2.34
TIMP3P35625 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.42□□□□□ -2.34
TIMP3P35625 MIR548BB-201ENST00000626714 66 ntBASIC0.42□□□□□ -2.34
TIMP3P35625 MIR216B-201ENST00000390186 82 ntBASIC0.41□□□□□ -2.34
TIMP3P35625 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.41□□□□□ -2.34
TIMP3P35625 RNU2-59P-201ENST00000410482 191 ntBASIC0.41□□□□□ -2.34
TIMP3P35625 AC093729.1-201ENST00000513074 128 ntBASIC0.41□□□□□ -2.34
TIMP3P35625 AC243829.6-201ENST00000612652 106 ntBASIC0.41□□□□□ -2.34
TIMP3P35625 AC073869.9-201ENST00000641610 120 ntBASIC0.41□□□□□ -2.34
TIMP3P35625 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.4□□□□□ -2.35
TIMP3P35625 MIR494-201ENST00000349529 81 ntBASIC0.4□□□□□ -2.35
TIMP3P35625 SNORD73B-201ENST00000364394 72 ntBASIC0.4□□□□□ -2.35
TIMP3P35625 RNU1-141P-201ENST00000364623 158 ntBASIC0.4□□□□□ -2.35
TIMP3P35625 RNY4P3-201ENST00000365254 95 ntBASIC0.4□□□□□ -2.35
TIMP3P35625 RNU6-497P-201ENST00000365316 104 ntBASIC0.4□□□□□ -2.35
TIMP3P35625 RNU6-1051P-201ENST00000365471 102 ntBASIC0.4□□□□□ -2.35
TIMP3P35625 SNORA50A-201ENST00000384225 134 ntBASIC0.4□□□□□ -2.35
TIMP3P35625 U3.27-201ENST00000391237 200 ntBASIC0.4□□□□□ -2.35
TIMP3P35625 RNU6-1052P-201ENST00000411398 104 ntBASIC0.4□□□□□ -2.35
TIMP3P35625 RNA5SP484-201ENST00000458857 111 ntBASIC0.4□□□□□ -2.35
TIMP3P35625 FGF7P7-201ENST00000514120 227 ntBASIC0.4□□□□□ -2.35
TIMP3P35625 RNU6-719P-201ENST00000516671 104 ntBASIC0.4□□□□□ -2.35
TIMP3P35625 MIR4752-201ENST00000579672 72 ntBASIC0.4□□□□□ -2.35
TIMP3P35625 SNORA63.2-201ENST00000362603 126 ntBASIC0.39□□□□□ -2.35
TIMP3P35625 RNU6-820P-201ENST00000384273 107 ntBASIC0.39□□□□□ -2.35
TIMP3P35625 AC093423.1-201ENST00000440817 142 ntBASIC0.39□□□□□ -2.35
TIMP3P35625 RNU6ATAC17P-201ENST00000516074 71 ntBASIC0.39□□□□□ -2.35
TIMP3P35625 RNU6-762P-201ENST00000517107 102 ntBASIC0.39□□□□□ -2.35
TIMP3P35625 MIR4460-201ENST00000577862 86 ntBASIC0.39□□□□□ -2.35
TIMP3P35625 Y_RNA.73-201ENST00000362910 113 ntBASIC0.38□□□□□ -2.35
TIMP3P35625 VTRNA1-3-201ENST00000365645 89 ntBASIC0.38□□□□□ -2.35
TIMP3P35625 Y_RNA.423-201ENST00000384057 113 ntBASIC0.38□□□□□ -2.35
TIMP3P35625 SNORA25.13-201ENST00000516395 103 ntBASIC0.38□□□□□ -2.35
TIMP3P35625 NAMPTP3-201ENST00000569273 224 ntBASIC0.38□□□□□ -2.35
TIMP3P35625 MIR3140-201ENST00000583685 90 ntBASIC0.38□□□□□ -2.35
TIMP3P35625 MIR924-201ENST00000638017 53 ntBASIC0.38□□□□□ -2.35
TIMP3P35625 SNORD44.1-201ENST00000363202 61 ntBASIC0.37□□□□□ -2.35
TIMP3P35625 SNORD90-201ENST00000391145 111 ntBASIC0.37□□□□□ -2.35
TIMP3P35625 SNORD110-201ENST00000408189 75 ntBASIC0.37□□□□□ -2.35
TIMP3P35625 AC006210.1-201ENST00000424882 111 ntBASIC0.37□□□□□ -2.35
TIMP3P35625 AC022137.1-201ENST00000483735 151 ntBASIC0.37□□□□□ -2.35
TIMP3P35625 SNORA68.3-201ENST00000515906 83 ntBASIC0.37□□□□□ -2.35
TIMP3P35625 AC062037.1-201ENST00000605302 128 ntBASIC0.37□□□□□ -2.35
TIMP3P35625 SNORA70.25-201ENST00000612741 95 ntBASIC0.37□□□□□ -2.35
TIMP3P35625 MIR4679-1-201ENST00000637619 75 ntBASIC0.37□□□□□ -2.35
TIMP3P35625 AC006160.2-201ENST00000637708 154 ntBASIC0.37□□□□□ -2.35
TIMP3P35625 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.36□□□□□ -2.35
TIMP3P35625 SNORA2A-201ENST00000383885 135 ntBASIC0.36□□□□□ -2.35
TIMP3P35625 Y_RNA.426-201ENST00000384068 113 ntBASIC0.36□□□□□ -2.35
TIMP3P35625 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.36□□□□□ -2.35
TIMP3P35625 RNU6-863P-201ENST00000515989 104 ntBASIC0.36□□□□□ -2.35
TIMP3P35625 MIR5588-201ENST00000581890 63 ntBASIC0.36□□□□□ -2.35
TIMP3P35625 AC069503.3-201ENST00000618674 145 ntBASIC0.36□□□□□ -2.35
TIMP3P35625 RNU5F-1-201ENST00000362507 117 ntBASIC0.35□□□□□ -2.35
TIMP3P35625 RNU6-979P-201ENST00000383896 107 ntBASIC0.35□□□□□ -2.35
TIMP3P35625 RNU6-242P-201ENST00000384359 107 ntBASIC0.35□□□□□ -2.35
TIMP3P35625 MT-TY-201ENST00000387409 66 ntBASIC0.35□□□□□ -2.35
TIMP3P35625 AC140658.3-201ENST00000567603 271 ntBASIC0.35□□□□□ -2.35
TIMP3P35625 MIR5706-201ENST00000579841 80 ntBASIC0.35□□□□□ -2.35
TIMP3P35625 MIR548O2-201ENST00000616090 70 ntBASIC0.35□□□□□ -2.35
TIMP3P35625 MIRLET7D-201ENST00000362263 87 ntBASIC0.34□□□□□ -2.36
TIMP3P35625 RNA5SP457-201ENST00000363657 124 ntBASIC0.34□□□□□ -2.36
TIMP3P35625 SNORA26.2-201ENST00000390922 122 ntBASIC0.34□□□□□ -2.36
TIMP3P35625 RNU6-848P-201ENST00000515948 107 ntBASIC0.34□□□□□ -2.36
TIMP3P35625 RNU6-617P-201ENST00000516147 107 ntBASIC0.34□□□□□ -2.36
TIMP3P35625 RNU6-473P-201ENST00000516164 107 ntBASIC0.34□□□□□ -2.36
TIMP3P35625 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.34□□□□□ -2.36
TIMP3P35625 RNU6-1049P-201ENST00000516414 107 ntBASIC0.34□□□□□ -2.36
TIMP3P35625 YWHAEP2-201ENST00000580066 112 ntBASIC0.34□□□□□ -2.36
TIMP3P35625 RNU1-29P-201ENST00000606574 126 ntBASIC0.34□□□□□ -2.36
TIMP3P35625 MIR6755-201ENST00000619993 66 ntBASIC0.34□□□□□ -2.36
TIMP3P35625 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
TIMP3P35625 MIR103A1-201ENST00000362165 78 ntBASIC0.33□□□□□ -2.36
TIMP3P35625 Y_RNA.607-201ENST00000410597 98 ntBASIC0.33□□□□□ -2.36
TIMP3P35625 RNY4P29-201ENST00000410801 97 ntBASIC0.33□□□□□ -2.36
TIMP3P35625 RNU5B-6P-201ENST00000516765 68 ntBASIC0.33□□□□□ -2.36
TIMP3P35625 U7.6-201ENST00000610841 64 ntBASIC0.33□□□□□ -2.36
TIMP3P35625 MIR330-201ENST00000362196 94 ntBASIC0.32□□□□□ -2.36
TIMP3P35625 Y_RNA.115-201ENST00000363272 98 ntBASIC0.32□□□□□ -2.36
TIMP3P35625 RNU6-624P-201ENST00000363411 107 ntBASIC0.32□□□□□ -2.36
TIMP3P35625 RNU6-1276P-201ENST00000365372 104 ntBASIC0.32□□□□□ -2.36
TIMP3P35625 RNU6V-201ENST00000384105 107 ntBASIC0.32□□□□□ -2.36
TIMP3P35625 SNORA24B-201ENST00000384176 131 ntBASIC0.32□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 166.6 ms