Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MIR518A1-201ENST00000385068 85 ntBASIC0.51□□□□□ -2.33
HOXD3P31249 RNA5SP395-201ENST00000516567 118 ntBASIC0.51□□□□□ -2.33
HOXD3P31249 AC006254.2-201ENST00000603259 279 ntBASIC0.51□□□□□ -2.33
HOXD3P31249 RNA5SP347-201ENST00000362445 119 ntBASIC0.5□□□□□ -2.33
HOXD3P31249 RNA5SP257-201ENST00000363023 116 ntBASIC0.5□□□□□ -2.33
HOXD3P31249 RNY1P1-201ENST00000364372 112 ntBASIC0.5□□□□□ -2.33
HOXD3P31249 MIR617-201ENST00000385030 97 ntBASIC0.5□□□□□ -2.33
HOXD3P31249 MIR519C-201ENST00000385053 87 ntBASIC0.5□□□□□ -2.33
HOXD3P31249 MIR1236-201ENST00000408340 102 ntBASIC0.5□□□□□ -2.33
HOXD3P31249 AC098934.3-201ENST00000430450 190 ntBASIC0.5□□□□□ -2.33
HOXD3P31249 RNA5SP121-201ENST00000516537 101 ntBASIC0.5□□□□□ -2.33
HOXD3P31249 MIR3140-201ENST00000583685 90 ntBASIC0.5□□□□□ -2.33
HOXD3P31249 IGLL4P-201ENST00000614590 133 ntBASIC0.5□□□□□ -2.33
HOXD3P31249 AL109933.3-201ENST00000619095 188 ntBASIC0.5□□□□□ -2.33
HOXD3P31249 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.5□□□□□ -2.33
HOXD3P31249 AL162376.1-201ENST00000624117 175 ntBASIC0.5□□□□□ -2.33
HOXD3P31249 MIR548BB-201ENST00000626714 66 ntBASIC0.5□□□□□ -2.33
HOXD3P31249 RNU6-497P-201ENST00000365316 104 ntBASIC0.49□□□□□ -2.33
HOXD3P31249 Y_RNA.558-201ENST00000384685 113 ntBASIC0.49□□□□□ -2.33
HOXD3P31249 MIR451A-201ENST00000385059 72 ntBASIC0.49□□□□□ -2.33
HOXD3P31249 MIR548U-201ENST00000390728 81 ntBASIC0.49□□□□□ -2.33
HOXD3P31249 Y_RNA.611-201ENST00000410682 108 ntBASIC0.49□□□□□ -2.33
HOXD3P31249 RNA5SP484-201ENST00000458857 111 ntBASIC0.49□□□□□ -2.33
HOXD3P31249 RNU6-229P-201ENST00000516614 102 ntBASIC0.49□□□□□ -2.33
HOXD3P31249 AC062037.1-201ENST00000605302 128 ntBASIC0.49□□□□□ -2.33
HOXD3P31249 SNORA70.25-201ENST00000612741 95 ntBASIC0.49□□□□□ -2.33
HOXD3P31249 AC243829.3-201ENST00000622177 108 ntBASIC0.49□□□□□ -2.33
HOXD3P31249 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.49□□□□□ -2.33
HOXD3P31249 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.48□□□□□ -2.33
HOXD3P31249 RNU6-935P-201ENST00000410371 100 ntBASIC0.48□□□□□ -2.33
HOXD3P31249 FGF7P7-201ENST00000514120 227 ntBASIC0.48□□□□□ -2.33
HOXD3P31249 RNU6ATAC17P-201ENST00000516074 71 ntBASIC0.48□□□□□ -2.33
HOXD3P31249 RNA5SP330-201ENST00000517096 96 ntBASIC0.48□□□□□ -2.33
HOXD3P31249 AC018659.1-201ENST00000551083 169 ntBASIC0.48□□□□□ -2.33
HOXD3P31249 MIR4796-201ENST00000580742 81 ntBASIC0.48□□□□□ -2.33
HOXD3P31249 MIR8087-201ENST00000612745 78 ntBASIC0.48□□□□□ -2.33
HOXD3P31249 RNU6-1051P-201ENST00000365471 102 ntBASIC0.47□□□□□ -2.33
HOXD3P31249 MIR450A2-201ENST00000385022 100 ntBASIC0.47□□□□□ -2.33
HOXD3P31249 RNA5SP193-201ENST00000410353 107 ntBASIC0.47□□□□□ -2.33
HOXD3P31249 SNORA68.3-201ENST00000515906 83 ntBASIC0.47□□□□□ -2.33
HOXD3P31249 MIR4711-201ENST00000578274 70 ntBASIC0.47□□□□□ -2.33
HOXD3P31249 RNU1-29P-201ENST00000606574 126 ntBASIC0.47□□□□□ -2.33
HOXD3P31249 SNORD44.1-201ENST00000363202 61 ntBASIC0.46□□□□□ -2.34
HOXD3P31249 RNU1-141P-201ENST00000364623 158 ntBASIC0.46□□□□□ -2.34
HOXD3P31249 Y_RNA.423-201ENST00000384057 113 ntBASIC0.46□□□□□ -2.34
HOXD3P31249 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.46□□□□□ -2.34
HOXD3P31249 AC093423.1-201ENST00000440817 142 ntBASIC0.46□□□□□ -2.34
HOXD3P31249 snoU13.17-201ENST00000458802 104 ntBASIC0.46□□□□□ -2.34
HOXD3P31249 RNU6-1232P-201ENST00000516299 86 ntBASIC0.46□□□□□ -2.34
HOXD3P31249 RNU6-1057P-201ENST00000517162 102 ntBASIC0.46□□□□□ -2.34
HOXD3P31249 NAMPTP3-201ENST00000569273 224 ntBASIC0.46□□□□□ -2.34
HOXD3P31249 MIR5087-201ENST00000635826 76 ntBASIC0.46□□□□□ -2.34
HOXD3P31249 MIR103A1-201ENST00000362165 78 ntBASIC0.45□□□□□ -2.34
HOXD3P31249 RNA5SP499-201ENST00000363982 119 ntBASIC0.45□□□□□ -2.34
HOXD3P31249 SNORD71-201ENST00000411292 86 ntBASIC0.45□□□□□ -2.34
HOXD3P31249 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.45□□□□□ -2.34
HOXD3P31249 AC022137.1-201ENST00000483735 151 ntBASIC0.45□□□□□ -2.34
HOXD3P31249 SNORA25.13-201ENST00000516395 103 ntBASIC0.45□□□□□ -2.34
HOXD3P31249 MIR6755-201ENST00000619993 66 ntBASIC0.45□□□□□ -2.34
HOXD3P31249 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.44□□□□□ -2.34
HOXD3P31249 Y_RNA.388-201ENST00000383919 113 ntBASIC0.44□□□□□ -2.34
HOXD3P31249 MIR92A1-201ENST00000385233 78 ntBASIC0.44□□□□□ -2.34
HOXD3P31249 RNU2-59P-201ENST00000410482 191 ntBASIC0.44□□□□□ -2.34
HOXD3P31249 RNU7-74P-201ENST00000459104 62 ntBASIC0.44□□□□□ -2.34
HOXD3P31249 AC093729.1-201ENST00000513074 128 ntBASIC0.44□□□□□ -2.34
HOXD3P31249 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.44□□□□□ -2.34
HOXD3P31249 MIR330-201ENST00000362196 94 ntBASIC0.43□□□□□ -2.34
HOXD3P31249 RNU6-35P-201ENST00000384530 107 ntBASIC0.43□□□□□ -2.34
HOXD3P31249 RNU6-592P-201ENST00000411333 103 ntBASIC0.43□□□□□ -2.34
HOXD3P31249 HAR1A.1-201ENST00000459583 118 ntBASIC0.43□□□□□ -2.34
HOXD3P31249 RN7SKP12-201ENST00000516275 143 ntBASIC0.43□□□□□ -2.34
HOXD3P31249 RNU5B-6P-201ENST00000516765 68 ntBASIC0.43□□□□□ -2.34
HOXD3P31249 uc_338.17-201ENST00000619633 179 ntBASIC0.43□□□□□ -2.34
HOXD3P31249 AC006160.2-201ENST00000637708 154 ntBASIC0.43□□□□□ -2.34
HOXD3P31249 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.43□□□□□ -2.34
HOXD3P31249 SNORA63.2-201ENST00000362603 126 ntBASIC0.42□□□□□ -2.34
HOXD3P31249 Y_RNA.258-201ENST00000364613 105 ntBASIC0.42□□□□□ -2.34
HOXD3P31249 RNU6-979P-201ENST00000383896 107 ntBASIC0.42□□□□□ -2.34
HOXD3P31249 RNY4P29-201ENST00000410801 97 ntBASIC0.42□□□□□ -2.34
HOXD3P31249 MIR4460-201ENST00000577862 86 ntBASIC0.42□□□□□ -2.34
HOXD3P31249 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.42□□□□□ -2.34
HOXD3P31249 MIR5588-201ENST00000581890 63 ntBASIC0.42□□□□□ -2.34
HOXD3P31249 SNORD115-37-201ENST00000363768 82 ntBASIC0.41□□□□□ -2.34
HOXD3P31249 MT-TY-201ENST00000387409 66 ntBASIC0.41□□□□□ -2.34
HOXD3P31249 SNORD110-201ENST00000408189 75 ntBASIC0.41□□□□□ -2.34
HOXD3P31249 MIR1197-201ENST00000408818 88 ntBASIC0.41□□□□□ -2.34
HOXD3P31249 RNA5SP476-201ENST00000516613 103 ntBASIC0.41□□□□□ -2.34
HOXD3P31249 AC140658.3-201ENST00000567603 271 ntBASIC0.41□□□□□ -2.34
HOXD3P31249 MIRLET7D-201ENST00000362263 87 ntBASIC0.4□□□□□ -2.35
HOXD3P31249 RNU6-573P-201ENST00000383938 106 ntBASIC0.4□□□□□ -2.35
HOXD3P31249 RNU6V-201ENST00000384105 107 ntBASIC0.4□□□□□ -2.35
HOXD3P31249 SNORA24B-201ENST00000384176 131 ntBASIC0.4□□□□□ -2.35
HOXD3P31249 RNU6-820P-201ENST00000384273 107 ntBASIC0.4□□□□□ -2.35
HOXD3P31249 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.4□□□□□ -2.35
HOXD3P31249 SNORA62.5-201ENST00000516634 120 ntBASIC0.4□□□□□ -2.35
HOXD3P31249 YWHAEP2-201ENST00000580066 112 ntBASIC0.4□□□□□ -2.35
HOXD3P31249 MIR548O2-201ENST00000616090 70 ntBASIC0.4□□□□□ -2.35
HOXD3P31249 RNU6-54P-201ENST00000365563 107 ntBASIC0.39□□□□□ -2.35
HOXD3P31249 SNORA2A-201ENST00000383885 135 ntBASIC0.39□□□□□ -2.35
HOXD3P31249 SNORA26.2-201ENST00000390922 122 ntBASIC0.39□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 170.7 ms