Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MIR606-201ENST00000384851 96 ntBASIC-1.09□□□□□ -2.58
USF1P22415 MIR548D2-201ENST00000384955 97 ntBASIC-1.09□□□□□ -2.58
USF1P22415 RNA5SP136-201ENST00000410906 107 ntBASIC-1.09□□□□□ -2.58
USF1P22415 RNU6-1023P-201ENST00000516137 106 ntBASIC-1.09□□□□□ -2.58
USF1P22415 RNU6-111P-201ENST00000517179 105 ntBASIC-1.09□□□□□ -2.58
USF1P22415 DLEU2_3.1-201ENST00000620005 73 ntBASIC-1.09□□□□□ -2.58
USF1P22415 RNU6-647P-201ENST00000364243 107 ntBASIC-1.1□□□□□ -2.59
USF1P22415 RNA5SP192-201ENST00000364404 120 ntBASIC-1.1□□□□□ -2.59
USF1P22415 SNORA20.1-201ENST00000364790 130 ntBASIC-1.1□□□□□ -2.59
USF1P22415 SNORA63.6-201ENST00000364921 119 ntBASIC-1.1□□□□□ -2.59
USF1P22415 snoR1.1-201ENST00000628177 80 ntBASIC-1.1□□□□□ -2.59
USF1P22415 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.11□□□□□ -2.59
USF1P22415 MIR601-201ENST00000385256 79 ntBASIC-1.11□□□□□ -2.59
USF1P22415 MIR1302-3-201ENST00000408128 138 ntBASIC-1.11□□□□□ -2.59
USF1P22415 RNA5SP461-201ENST00000516451 104 ntBASIC-1.11□□□□□ -2.59
USF1P22415 RNU6-1234P-201ENST00000516877 103 ntBASIC-1.11□□□□□ -2.59
USF1P22415 Y_RNA.326-201ENST00000365176 113 ntBASIC-1.12□□□□□ -2.59
USF1P22415 RNU6-409P-201ENST00000384114 104 ntBASIC-1.12□□□□□ -2.59
USF1P22415 Y_RNA.459-201ENST00000384251 102 ntBASIC-1.12□□□□□ -2.59
USF1P22415 AC022559.1-201ENST00000520905 205 ntBASIC-1.12□□□□□ -2.59
USF1P22415 AC072026.1-201ENST00000605023 201 ntBASIC-1.12□□□□□ -2.59
USF1P22415 AC062037.2-201ENST00000610137 73 ntBASIC-1.12□□□□□ -2.59
USF1P22415 AL442128.1-201ENST00000615151 90 ntBASIC-1.12□□□□□ -2.59
USF1P22415 MIRLET7F1-201ENST00000362202 87 ntBASIC-1.13□□□□□ -2.59
USF1P22415 RNU6-1125P-201ENST00000363601 107 ntBASIC-1.13□□□□□ -2.59
USF1P22415 Y_RNA.344-201ENST00000365381 112 ntBASIC-1.13□□□□□ -2.59
USF1P22415 RNU6-1052P-201ENST00000411398 104 ntBASIC-1.13□□□□□ -2.59
USF1P22415 RNU7-197P-201ENST00000458836 62 ntBASIC-1.13□□□□□ -2.59
USF1P22415 RNU7-134P-201ENST00000458997 64 ntBASIC-1.13□□□□□ -2.59
USF1P22415 SNORD18.2-201ENST00000459604 70 ntBASIC-1.13□□□□□ -2.59
USF1P22415 RNU6-719P-201ENST00000516671 104 ntBASIC-1.13□□□□□ -2.59
USF1P22415 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-1.13□□□□□ -2.59
USF1P22415 MIR198-201ENST00000637333 62 ntBASIC-1.13□□□□□ -2.59
USF1P22415 RNU6-495P-201ENST00000362995 107 ntBASIC-1.14□□□□□ -2.59
USF1P22415 Y_RNA.155-201ENST00000363632 101 ntBASIC-1.14□□□□□ -2.59
USF1P22415 RNU6-915P-201ENST00000364943 103 ntBASIC-1.14□□□□□ -2.59
USF1P22415 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.14□□□□□ -2.59
USF1P22415 Y_RNA.507-201ENST00000384500 99 ntBASIC-1.14□□□□□ -2.59
USF1P22415 MIR1263-201ENST00000408324 86 ntBASIC-1.14□□□□□ -2.59
USF1P22415 MTCYBP9-201ENST00000431021 303 ntBASIC-1.14□□□□□ -2.59
USF1P22415 Y_RNA.680-201ENST00000516441 93 ntBASIC-1.14□□□□□ -2.59
USF1P22415 AC025521.1-201ENST00000621624 286 ntBASIC-1.14□□□□□ -2.59
USF1P22415 Y_RNA.114-201ENST00000363265 113 ntBASIC-1.15□□□□□ -2.59
USF1P22415 Y_RNA.441-201ENST00000384123 112 ntBASIC-1.15□□□□□ -2.59
USF1P22415 MIR8485-201ENST00000401372 91 ntBASIC-1.15□□□□□ -2.59
USF1P22415 RNU6-1135P-201ENST00000411083 103 ntBASIC-1.15□□□□□ -2.59
USF1P22415 RNU7-85P-201ENST00000458851 63 ntBASIC-1.15□□□□□ -2.59
USF1P22415 FGF7P7-201ENST00000514120 227 ntBASIC-1.15□□□□□ -2.59
USF1P22415 MIR3165-201ENST00000579874 75 ntBASIC-1.15□□□□□ -2.59
USF1P22415 MIR4464-201ENST00000580818 92 ntBASIC-1.15□□□□□ -2.59
USF1P22415 YWHAEP3-201ENST00000582767 121 ntBASIC-1.15□□□□□ -2.59
USF1P22415 RNU6-990P-201ENST00000364385 104 ntBASIC-1.16□□□□□ -2.6
USF1P22415 RNU4-11P-201ENST00000365287 132 ntBASIC-1.16□□□□□ -2.6
USF1P22415 SNORD50.2-201ENST00000365465 70 ntBASIC-1.16□□□□□ -2.6
USF1P22415 SNORA62.4-201ENST00000365504 151 ntBASIC-1.16□□□□□ -2.6
USF1P22415 SNORA24B-201ENST00000384176 131 ntBASIC-1.16□□□□□ -2.6
USF1P22415 MIR124-2-201ENST00000385081 109 ntBASIC-1.16□□□□□ -2.6
USF1P22415 RNU6-706P-201ENST00000517229 104 ntBASIC-1.16□□□□□ -2.6
USF1P22415 Y_RNA.11-201ENST00000362375 109 ntBASIC-1.17□□□□□ -2.6
USF1P22415 SNORD114-17-201ENST00000364699 75 ntBASIC-1.17□□□□□ -2.6
USF1P22415 RNU6-132P-201ENST00000383863 107 ntBASIC-1.17□□□□□ -2.6
USF1P22415 RNU6-738P-201ENST00000384531 106 ntBASIC-1.17□□□□□ -2.6
USF1P22415 snoU83B.1-201ENST00000517136 88 ntBASIC-1.17□□□□□ -2.6
USF1P22415 MIR4723-201ENST00000585070 81 ntBASIC-1.17□□□□□ -2.6
USF1P22415 SNORA63.2-201ENST00000362603 126 ntBASIC-1.18□□□□□ -2.6
USF1P22415 Y_RNA.240-201ENST00000364469 95 ntBASIC-1.18□□□□□ -2.6
USF1P22415 RNU6-460P-201ENST00000391158 108 ntBASIC-1.18□□□□□ -2.6
USF1P22415 Y_RNA.633-201ENST00000459107 95 ntBASIC-1.18□□□□□ -2.6
USF1P22415 RNU6-65P-201ENST00000516332 98 ntBASIC-1.18□□□□□ -2.6
USF1P22415 MIR4536-1-201ENST00000583537 88 ntBASIC-1.18□□□□□ -2.6
USF1P22415 MIR3140-201ENST00000583685 90 ntBASIC-1.18□□□□□ -2.6
USF1P22415 AC141273.2-201ENST00000618989 130 ntBASIC-1.18□□□□□ -2.6
USF1P22415 AC090617.8-201ENST00000623339 167 ntBASIC-1.18□□□□□ -2.6
USF1P22415 Y_RNA.528-201ENST00000384575 108 ntBASIC-1.19□□□□□ -2.6
USF1P22415 RNU6-1271P-201ENST00000517049 105 ntBASIC-1.19□□□□□ -2.6
USF1P22415 AC026421.1-201ENST00000519101 163 ntBASIC-1.19□□□□□ -2.6
USF1P22415 Y_RNA.812-201ENST00000610788 101 ntBASIC-1.19□□□□□ -2.6
USF1P22415 Y_RNA.784-201ENST00000613803 101 ntBASIC-1.19□□□□□ -2.6
USF1P22415 Y_RNA.787-201ENST00000616522 101 ntBASIC-1.19□□□□□ -2.6
USF1P22415 Y_RNA.780-201ENST00000617336 101 ntBASIC-1.19□□□□□ -2.6
USF1P22415 Y_RNA.801-201ENST00000619005 101 ntBASIC-1.19□□□□□ -2.6
USF1P22415 RNU6-208P-201ENST00000362431 107 ntBASIC-1.2□□□□□ -2.6
USF1P22415 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.2□□□□□ -2.6
USF1P22415 SNORA63-201ENST00000363450 132 ntBASIC-1.2□□□□□ -2.6
USF1P22415 Y_RNA.150-201ENST00000363562 102 ntBASIC-1.2□□□□□ -2.6
USF1P22415 RNY4P6-201ENST00000363667 96 ntBASIC-1.2□□□□□ -2.6
USF1P22415 MIR568-201ENST00000385036 95 ntBASIC-1.2□□□□□ -2.6
USF1P22415 RNU6-816P-201ENST00000390914 107 ntBASIC-1.2□□□□□ -2.6
USF1P22415 RNU6-1268P-201ENST00000391214 107 ntBASIC-1.2□□□□□ -2.6
USF1P22415 RNU6-1239P-201ENST00000391310 107 ntBASIC-1.2□□□□□ -2.6
USF1P22415 Y_RNA.644-201ENST00000459006 113 ntBASIC-1.2□□□□□ -2.6
USF1P22415 AC021146.9-201ENST00000512503 156 ntBASIC-1.2□□□□□ -2.6
USF1P22415 Y_RNA.674-201ENST00000516362 113 ntBASIC-1.2□□□□□ -2.6
USF1P22415 SNORA81.3-201ENST00000517283 198 ntBASIC-1.2□□□□□ -2.6
USF1P22415 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.2□□□□□ -2.6
USF1P22415 Y_RNA.272-201ENST00000364696 102 ntBASIC-1.21□□□□□ -2.6
USF1P22415 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.21□□□□□ -2.6
USF1P22415 RNU7-24P-201ENST00000458867 62 ntBASIC-1.21□□□□□ -2.6
USF1P22415 RNU6-479P-201ENST00000516348 105 ntBASIC-1.21□□□□□ -2.6
USF1P22415 RNU6-781P-201ENST00000516377 101 ntBASIC-1.21□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 167.9 ms