Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC145423.2-201ENST00000610631 239 ntBASIC1.1□□□□□ -2.23
COL6A1P12109 U7.4-201ENST00000614961 63 ntBASIC1.1□□□□□ -2.23
COL6A1P12109 MIR1297-201ENST00000637311 77 ntBASIC1.1□□□□□ -2.23
COL6A1P12109 MIR573-201ENST00000384964 99 ntBASIC1.09□□□□□ -2.23
COL6A1P12109 SNORD90-201ENST00000391145 111 ntBASIC1.09□□□□□ -2.23
COL6A1P12109 ACA64.5-201ENST00000516207 127 ntBASIC1.09□□□□□ -2.23
COL6A1P12109 RNU7-161P-201ENST00000517289 62 ntBASIC1.09□□□□□ -2.23
COL6A1P12109 MIR4639-201ENST00000584938 69 ntBASIC1.09□□□□□ -2.23
COL6A1P12109 AC067863.3-201ENST00000624172 122 ntBASIC1.09□□□□□ -2.23
COL6A1P12109 RNA5SP457-201ENST00000363657 124 ntBASIC1.08□□□□□ -2.24
COL6A1P12109 MIR644A-201ENST00000385262 94 ntBASIC1.08□□□□□ -2.24
COL6A1P12109 MIR216B-201ENST00000390186 82 ntBASIC1.08□□□□□ -2.24
COL6A1P12109 U3.27-201ENST00000391237 200 ntBASIC1.08□□□□□ -2.24
COL6A1P12109 RNU6-1187P-201ENST00000364771 110 ntBASIC1.07□□□□□ -2.24
COL6A1P12109 MIR2113-201ENST00000459007 91 ntBASIC1.07□□□□□ -2.24
COL6A1P12109 YWHAEP2-201ENST00000580066 112 ntBASIC1.07□□□□□ -2.24
COL6A1P12109 YWHAEP3-201ENST00000582767 121 ntBASIC1.07□□□□□ -2.24
COL6A1P12109 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.06□□□□□ -2.24
COL6A1P12109 Y_RNA.12-201ENST00000362393 112 ntBASIC1.06□□□□□ -2.24
COL6A1P12109 MIR193B-201ENST00000384907 83 ntBASIC1.06□□□□□ -2.24
COL6A1P12109 RNU7-74P-201ENST00000459104 62 ntBASIC1.06□□□□□ -2.24
COL6A1P12109 RNA5SP255-201ENST00000516370 107 ntBASIC1.06□□□□□ -2.24
COL6A1P12109 RNU6-303P-201ENST00000517091 106 ntBASIC1.06□□□□□ -2.24
COL6A1P12109 MIR1273G-201ENST00000577677 100 ntBASIC1.06□□□□□ -2.24
COL6A1P12109 MIR3612-201ENST00000579753 87 ntBASIC1.06□□□□□ -2.24
COL6A1P12109 MIR4714-201ENST00000580728 77 ntBASIC1.06□□□□□ -2.24
COL6A1P12109 MIR3920-201ENST00000581751 86 ntBASIC1.06□□□□□ -2.24
COL6A1P12109 MIR3140-201ENST00000583685 90 ntBASIC1.06□□□□□ -2.24
COL6A1P12109 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
COL6A1P12109 RNU6-1126P-201ENST00000384002 107 ntBASIC1.05□□□□□ -2.24
COL6A1P12109 SNORD28-201ENST00000384706 75 ntBASIC1.05□□□□□ -2.24
COL6A1P12109 MIR548L-201ENST00000408303 86 ntBASIC1.05□□□□□ -2.24
COL6A1P12109 AC244669.1-204ENST00000621564 178 ntBASIC1.05□□□□□ -2.24
COL6A1P12109 RNU6-681P-201ENST00000364012 104 ntBASIC1.04□□□□□ -2.24
COL6A1P12109 MIR617-201ENST00000385030 97 ntBASIC1.04□□□□□ -2.24
COL6A1P12109 MIR889-201ENST00000401280 79 ntBASIC1.04□□□□□ -2.24
COL6A1P12109 RNU2-59P-201ENST00000410482 191 ntBASIC1.04□□□□□ -2.24
COL6A1P12109 RNU6-1052P-201ENST00000411398 104 ntBASIC1.04□□□□□ -2.24
COL6A1P12109 snoU13.17-201ENST00000458802 104 ntBASIC1.04□□□□□ -2.24
COL6A1P12109 PSMC1P5-201ENST00000512850 177 ntBASIC1.04□□□□□ -2.24
COL6A1P12109 RNU6-719P-201ENST00000516671 104 ntBASIC1.04□□□□□ -2.24
COL6A1P12109 AL590095.2-201ENST00000604136 117 ntBASIC1.04□□□□□ -2.24
COL6A1P12109 RNU6-1335P-201ENST00000365426 107 ntBASIC1.03□□□□□ -2.24
COL6A1P12109 RNU4-45P-201ENST00000365469 141 ntBASIC1.03□□□□□ -2.24
COL6A1P12109 MIR608-201ENST00000384820 100 ntBASIC1.03□□□□□ -2.24
COL6A1P12109 AC097510.1-201ENST00000510945 133 ntBASIC1.03□□□□□ -2.24
COL6A1P12109 MIR3678-201ENST00000578455 94 ntBASIC1.03□□□□□ -2.24
COL6A1P12109 MIR6513-201ENST00000621188 64 ntBASIC1.03□□□□□ -2.24
COL6A1P12109 SNORD18A-201ENST00000363753 72 ntBASIC1.02□□□□□ -2.25
COL6A1P12109 Y_RNA.545-201ENST00000384652 105 ntBASIC1.02□□□□□ -2.25
COL6A1P12109 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.02□□□□□ -2.25
COL6A1P12109 MIR4698-201ENST00000577795 80 ntBASIC1.02□□□□□ -2.25
COL6A1P12109 FAS-AS1.1-201ENST00000615327 126 ntBASIC1.02□□□□□ -2.25
COL6A1P12109 Y_RNA.371-201ENST00000365591 113 ntBASIC1.01□□□□□ -2.25
COL6A1P12109 SNORD99-201ENST00000408612 74 ntBASIC1.01□□□□□ -2.25
COL6A1P12109 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.01□□□□□ -2.25
COL6A1P12109 AC011195.1-201ENST00000578177 177 ntBASIC1.01□□□□□ -2.25
COL6A1P12109 MIR4484-201ENST00000582855 83 ntBASIC1.01□□□□□ -2.25
COL6A1P12109 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.01□□□□□ -2.25
COL6A1P12109 RNU6-340P-201ENST00000364005 107 ntBASIC1□□□□□ -2.25
COL6A1P12109 SNORA24B-201ENST00000384176 131 ntBASIC1□□□□□ -2.25
COL6A1P12109 RNU6-1177P-201ENST00000391058 104 ntBASIC1□□□□□ -2.25
COL6A1P12109 RNA5SP47-201ENST00000517230 109 ntBASIC1□□□□□ -2.25
COL6A1P12109 MIR548AG2-201ENST00000581228 64 ntBASIC1□□□□□ -2.25
COL6A1P12109 SNORD41.1-201ENST00000391000 69 ntBASIC0.99□□□□□ -2.25
COL6A1P12109 Y_RNA.606-201ENST00000410579 103 ntBASIC0.99□□□□□ -2.25
COL6A1P12109 AC074348.1-201ENST00000426503 132 ntBASIC0.99□□□□□ -2.25
COL6A1P12109 AC073261.1-201ENST00000429409 121 ntBASIC0.99□□□□□ -2.25
COL6A1P12109 SCARNA18B-201ENST00000458806 135 ntBASIC0.99□□□□□ -2.25
COL6A1P12109 Y_RNA.681-201ENST00000516445 113 ntBASIC0.99□□□□□ -2.25
COL6A1P12109 SCARNA16.5-201ENST00000517114 183 ntBASIC0.99□□□□□ -2.25
COL6A1P12109 MIR4653-201ENST00000585107 83 ntBASIC0.99□□□□□ -2.25
COL6A1P12109 Y_RNA.115-201ENST00000363272 98 ntBASIC0.98□□□□□ -2.25
COL6A1P12109 Y_RNA.532-201ENST00000384590 113 ntBASIC0.98□□□□□ -2.25
COL6A1P12109 MIR936-201ENST00000401264 98 ntBASIC0.98□□□□□ -2.25
COL6A1P12109 RPL39P28-201ENST00000465655 155 ntBASIC0.98□□□□□ -2.25
COL6A1P12109 U6.81-201ENST00000612550 106 ntBASIC0.98□□□□□ -2.25
COL6A1P12109 RNU6-411P-201ENST00000384451 107 ntBASIC0.97□□□□□ -2.25
COL6A1P12109 MIR519E-201ENST00000385075 84 ntBASIC0.97□□□□□ -2.25
COL6A1P12109 AC244098.3-201ENST00000424803 96 ntBASIC0.97□□□□□ -2.25
COL6A1P12109 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
COL6A1P12109 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
COL6A1P12109 MIR18A-201ENST00000362310 71 ntBASIC0.96□□□□□ -2.26
COL6A1P12109 RNU6-726P-201ENST00000364680 107 ntBASIC0.96□□□□□ -2.26
COL6A1P12109 RNU6-716P-201ENST00000365621 103 ntBASIC0.96□□□□□ -2.26
COL6A1P12109 SNORA8.1-201ENST00000384250 140 ntBASIC0.96□□□□□ -2.26
COL6A1P12109 Y_RNA.565-201ENST00000384719 101 ntBASIC0.96□□□□□ -2.26
COL6A1P12109 RNU6-274P-201ENST00000459566 107 ntBASIC0.96□□□□□ -2.26
COL6A1P12109 RNA5SP330-201ENST00000517096 96 ntBASIC0.96□□□□□ -2.26
COL6A1P12109 AC103810.9-201ENST00000606688 112 ntBASIC0.96□□□□□ -2.26
COL6A1P12109 Y_RNA.68-201ENST00000362881 102 ntBASIC0.95□□□□□ -2.26
COL6A1P12109 RNU6-824P-201ENST00000363724 104 ntBASIC0.95□□□□□ -2.26
COL6A1P12109 Y_RNA.258-201ENST00000364613 105 ntBASIC0.95□□□□□ -2.26
COL6A1P12109 RNU6-70P-201ENST00000516438 60 ntBASIC0.95□□□□□ -2.26
COL6A1P12109 MIR3134-201ENST00000579433 74 ntBASIC0.95□□□□□ -2.26
COL6A1P12109 AL353765.1-201ENST00000605514 183 ntBASIC0.95□□□□□ -2.26
COL6A1P12109 Y_RNA.788-201ENST00000622394 112 ntBASIC0.95□□□□□ -2.26
COL6A1P12109 RNA5SP227-201ENST00000516184 113 ntBASIC0.94□□□□□ -2.26
COL6A1P12109 MIR548O2-201ENST00000616090 70 ntBASIC0.94□□□□□ -2.26
COL6A1P12109 AC010487.4-201ENST00000637027 61 ntBASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 173.4 ms