Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 Y_RNA.420-201ENST00000384043 110 ntBASIC-1.02□□□□□ -2.57
CLDN3O15551 Y_RNA.568-201ENST00000384742 113 ntBASIC-1.02□□□□□ -2.57
CLDN3O15551 RNU6-86P-201ENST00000606534 107 ntBASIC-1.02□□□□□ -2.57
CLDN3O15551 RNU6-973P-201ENST00000364690 107 ntBASIC-1.03□□□□□ -2.57
CLDN3O15551 Y_RNA.353-201ENST00000365440 108 ntBASIC-1.03□□□□□ -2.57
CLDN3O15551 SNORD116-18-201ENST00000383961 92 ntBASIC-1.03□□□□□ -2.57
CLDN3O15551 RNU6-75P-201ENST00000515944 104 ntBASIC-1.03□□□□□ -2.57
CLDN3O15551 SCARNA15.1-201ENST00000516384 125 ntBASIC-1.03□□□□□ -2.57
CLDN3O15551 U7.2-201ENST00000607576 63 ntBASIC-1.03□□□□□ -2.57
CLDN3O15551 Y_RNA.377-201ENST00000365644 108 ntBASIC-1.04□□□□□ -2.58
CLDN3O15551 RNU6-394P-201ENST00000410735 107 ntBASIC-1.04□□□□□ -2.58
CLDN3O15551 MIR4324-201ENST00000584846 72 ntBASIC-1.04□□□□□ -2.58
CLDN3O15551 MIR6738-201ENST00000619620 64 ntBASIC-1.04□□□□□ -2.58
CLDN3O15551 Y_RNA.29-201ENST00000362570 113 ntBASIC-1.05□□□□□ -2.58
CLDN3O15551 AC025166.1-201ENST00000612411 163 ntBASIC-1.05□□□□□ -2.58
CLDN3O15551 DLEU2_3.1-201ENST00000620005 73 ntBASIC-1.05□□□□□ -2.58
CLDN3O15551 RNU6-502P-201ENST00000362419 108 ntBASIC-1.06□□□□□ -2.58
CLDN3O15551 Y_RNA.163-201ENST00000363702 113 ntBASIC-1.06□□□□□ -2.58
CLDN3O15551 Y_RNA.220-201ENST00000364244 109 ntBASIC-1.06□□□□□ -2.58
CLDN3O15551 RNU6-463P-201ENST00000384340 107 ntBASIC-1.06□□□□□ -2.58
CLDN3O15551 RNU6-476P-201ENST00000384726 107 ntBASIC-1.06□□□□□ -2.58
CLDN3O15551 MIR518B-201ENST00000385127 83 ntBASIC-1.06□□□□□ -2.58
CLDN3O15551 SNORD42B-201ENST00000458893 67 ntBASIC-1.06□□□□□ -2.58
CLDN3O15551 AC097510.1-201ENST00000510945 133 ntBASIC-1.06□□□□□ -2.58
CLDN3O15551 RNU6-65P-201ENST00000516332 98 ntBASIC-1.06□□□□□ -2.58
CLDN3O15551 MIR4536-1-201ENST00000583537 88 ntBASIC-1.06□□□□□ -2.58
CLDN3O15551 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-1.06□□□□□ -2.58
CLDN3O15551 AC025521.1-201ENST00000621624 286 ntBASIC-1.06□□□□□ -2.58
CLDN3O15551 MTND5P18-201ENST00000445624 1801 ntBASIC-1.06□□□□□ -2.58
CLDN3O15551 RNU6-1052P-201ENST00000411398 104 ntBASIC-1.07□□□□□ -2.58
CLDN3O15551 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-1.07□□□□□ -2.58
CLDN3O15551 RNU6-719P-201ENST00000516671 104 ntBASIC-1.07□□□□□ -2.58
CLDN3O15551 RNU6-10P-201ENST00000384036 107 ntBASIC-1.08□□□□□ -2.58
CLDN3O15551 MIR587-201ENST00000384845 96 ntBASIC-1.08□□□□□ -2.58
CLDN3O15551 MIR577-201ENST00000385196 96 ntBASIC-1.08□□□□□ -2.58
CLDN3O15551 Y_RNA.700-201ENST00000516806 100 ntBASIC-1.08□□□□□ -2.58
CLDN3O15551 AC004792.1-201ENST00000614523 137 ntBASIC-1.08□□□□□ -2.58
CLDN3O15551 MIRLET7F1-201ENST00000362202 87 ntBASIC-1.09□□□□□ -2.58
CLDN3O15551 RNU6-379P-201ENST00000363813 104 ntBASIC-1.09□□□□□ -2.58
CLDN3O15551 SNORD58C-201ENST00000365223 64 ntBASIC-1.09□□□□□ -2.58
CLDN3O15551 SNORD50.2-201ENST00000365465 70 ntBASIC-1.09□□□□□ -2.58
CLDN3O15551 Y_RNA.484-201ENST00000384389 103 ntBASIC-1.09□□□□□ -2.58
CLDN3O15551 RNA5SP67-201ENST00000516422 131 ntBASIC-1.09□□□□□ -2.58
CLDN3O15551 RNU6-1061P-201ENST00000516530 99 ntBASIC-1.09□□□□□ -2.58
CLDN3O15551 RNU6-881P-201ENST00000516813 102 ntBASIC-1.09□□□□□ -2.58
CLDN3O15551 Y_RNA.400-201ENST00000383963 111 ntBASIC-1.1□□□□□ -2.59
CLDN3O15551 FGF7P7-201ENST00000514120 227 ntBASIC-1.1□□□□□ -2.59
CLDN3O15551 MIR3179-1-201ENST00000578940 84 ntBASIC-1.1□□□□□ -2.59
CLDN3O15551 MIR3179-2-201ENST00000579107 84 ntBASIC-1.1□□□□□ -2.59
CLDN3O15551 MIR3179-3-201ENST00000579566 84 ntBASIC-1.1□□□□□ -2.59
CLDN3O15551 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-1.1□□□□□ -2.59
CLDN3O15551 MIR5704-201ENST00000584029 77 ntBASIC-1.1□□□□□ -2.59
CLDN3O15551 MIR3179-4-201ENST00000617599 84 ntBASIC-1.1□□□□□ -2.59
CLDN3O15551 Y_RNA.188-201ENST00000363952 111 ntBASIC-1.11□□□□□ -2.59
CLDN3O15551 MIR569-201ENST00000385228 96 ntBASIC-1.11□□□□□ -2.59
CLDN3O15551 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-1.11□□□□□ -2.59
CLDN3O15551 MIR4694-201ENST00000578534 80 ntBASIC-1.11□□□□□ -2.59
CLDN3O15551 Y_RNA.8-201ENST00000362353 102 ntBASIC-1.12□□□□□ -2.59
CLDN3O15551 Y_RNA.309-201ENST00000365046 111 ntBASIC-1.12□□□□□ -2.59
CLDN3O15551 RNU6-804P-201ENST00000384286 107 ntBASIC-1.12□□□□□ -2.59
CLDN3O15551 RNU6-24P-201ENST00000384440 107 ntBASIC-1.12□□□□□ -2.59
CLDN3O15551 RNU6-721P-201ENST00000410155 105 ntBASIC-1.12□□□□□ -2.59
CLDN3O15551 RNU7-85P-201ENST00000458851 63 ntBASIC-1.12□□□□□ -2.59
CLDN3O15551 MIR3144-201ENST00000579460 79 ntBASIC-1.12□□□□□ -2.59
CLDN3O15551 MIR6854-201ENST00000614935 69 ntBASIC-1.12□□□□□ -2.59
CLDN3O15551 RNU6-832P-201ENST00000363319 107 ntBASIC-1.13□□□□□ -2.59
CLDN3O15551 Y_RNA.659-201ENST00000515994 113 ntBASIC-1.13□□□□□ -2.59
CLDN3O15551 SNORD22.1-201ENST00000516331 125 ntBASIC-1.13□□□□□ -2.59
CLDN3O15551 RNU6-388P-201ENST00000517012 105 ntBASIC-1.13□□□□□ -2.59
CLDN3O15551 RNU6-389P-201ENST00000517048 105 ntBASIC-1.13□□□□□ -2.59
CLDN3O15551 AL513043.2-201ENST00000573941 143 ntBASIC-1.13□□□□□ -2.59
CLDN3O15551 Y_RNA.144-201ENST00000363521 113 ntBASIC-1.14□□□□□ -2.59
CLDN3O15551 Y_RNA.346-201ENST00000365385 112 ntBASIC-1.14□□□□□ -2.59
CLDN3O15551 Y_RNA.398-201ENST00000383952 99 ntBASIC-1.14□□□□□ -2.59
CLDN3O15551 SNORD74.6-201ENST00000364796 70 ntBASIC-1.15□□□□□ -2.59
CLDN3O15551 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.15□□□□□ -2.59
CLDN3O15551 RNA5SP470-201ENST00000516463 106 ntBASIC-1.15□□□□□ -2.59
CLDN3O15551 RNY1P9-201ENST00000532431 109 ntBASIC-1.15□□□□□ -2.59
CLDN3O15551 MIR3165-201ENST00000579874 75 ntBASIC-1.15□□□□□ -2.59
CLDN3O15551 MIR6773-201ENST00000612812 74 ntBASIC-1.15□□□□□ -2.59
CLDN3O15551 snoR1.1-201ENST00000628177 80 ntBASIC-1.15□□□□□ -2.59
CLDN3O15551 SNORA63.2-201ENST00000362603 126 ntBASIC-1.16□□□□□ -2.6
CLDN3O15551 RNY3P2-201ENST00000362918 102 ntBASIC-1.16□□□□□ -2.6
CLDN3O15551 RNU4-36P-201ENST00000364294 144 ntBASIC-1.16□□□□□ -2.6
CLDN3O15551 RNA5SP192-201ENST00000364404 120 ntBASIC-1.16□□□□□ -2.6
CLDN3O15551 RNU6-274P-201ENST00000459566 107 ntBASIC-1.16□□□□□ -2.6
CLDN3O15551 MIR378F-201ENST00000578143 78 ntBASIC-1.16□□□□□ -2.6
CLDN3O15551 MIR4679-2-201ENST00000578358 77 ntBASIC-1.16□□□□□ -2.6
CLDN3O15551 MIR8068-201ENST00000618032 68 ntBASIC-1.16□□□□□ -2.6
CLDN3O15551 RNU6-495P-201ENST00000362995 107 ntBASIC-1.17□□□□□ -2.6
CLDN3O15551 RNU6-132P-201ENST00000383863 107 ntBASIC-1.17□□□□□ -2.6
CLDN3O15551 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.17□□□□□ -2.6
CLDN3O15551 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.17□□□□□ -2.6
CLDN3O15551 RNA5SP272-201ENST00000516095 111 ntBASIC-1.17□□□□□ -2.6
CLDN3O15551 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.17□□□□□ -2.6
CLDN3O15551 MIR4439-201ENST00000583746 80 ntBASIC-1.17□□□□□ -2.6
CLDN3O15551 SNORA63.6-201ENST00000364921 119 ntBASIC-1.18□□□□□ -2.6
CLDN3O15551 MIR548U-201ENST00000390728 81 ntBASIC-1.18□□□□□ -2.6
CLDN3O15551 Y_RNA.630-201ENST00000411370 108 ntBASIC-1.18□□□□□ -2.6
CLDN3O15551 AC022137.1-201ENST00000483735 151 ntBASIC-1.18□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 173.2 ms