Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RNU6-70P-201ENST00000516438 60 ntBASIC1.67□□□□□ -2.14
CHMP3Q9Y3E7 RNU6-1015P-201ENST00000517121 99 ntBASIC1.67□□□□□ -2.14
CHMP3Q9Y3E7 RNU7-161P-201ENST00000517289 62 ntBASIC1.67□□□□□ -2.14
CHMP3Q9Y3E7 RNY4P3-201ENST00000365254 95 ntBASIC1.66□□□□□ -2.14
CHMP3Q9Y3E7 RNU6-411P-201ENST00000384451 107 ntBASIC1.65□□□□□ -2.15
CHMP3Q9Y3E7 MIR644A-201ENST00000385262 94 ntBASIC1.65□□□□□ -2.15
CHMP3Q9Y3E7 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
CHMP3Q9Y3E7 MIR548AG2-201ENST00000581228 64 ntBASIC1.65□□□□□ -2.15
CHMP3Q9Y3E7 AL136317.1-201ENST00000612653 226 ntBASIC1.65□□□□□ -2.15
CHMP3Q9Y3E7 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.65□□□□□ -2.15
CHMP3Q9Y3E7 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.65□□□□□ -2.15
CHMP3Q9Y3E7 MIR1297-201ENST00000637311 77 ntBASIC1.65□□□□□ -2.15
CHMP3Q9Y3E7 RNA5SP403-201ENST00000363598 108 ntBASIC1.64□□□□□ -2.15
CHMP3Q9Y3E7 RNU6-824P-201ENST00000363724 104 ntBASIC1.64□□□□□ -2.15
CHMP3Q9Y3E7 RNU6-340P-201ENST00000364005 107 ntBASIC1.64□□□□□ -2.15
CHMP3Q9Y3E7 RNU6-154P-201ENST00000384306 106 ntBASIC1.64□□□□□ -2.15
CHMP3Q9Y3E7 MIR2113-201ENST00000459007 91 ntBASIC1.64□□□□□ -2.15
CHMP3Q9Y3E7 MIR26B-201ENST00000362251 77 ntBASIC1.63□□□□□ -2.15
CHMP3Q9Y3E7 Y_RNA.174-201ENST00000363781 105 ntBASIC1.63□□□□□ -2.15
CHMP3Q9Y3E7 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
CHMP3Q9Y3E7 RNU7-104P-201ENST00000459398 79 ntBASIC1.63□□□□□ -2.15
CHMP3Q9Y3E7 RNU7-13P-201ENST00000516413 62 ntBASIC1.63□□□□□ -2.15
CHMP3Q9Y3E7 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.63□□□□□ -2.15
CHMP3Q9Y3E7 AC002350.1-201ENST00000490759 375 ntBASIC1.62□□□□□ -2.15
CHMP3Q9Y3E7 RNU6-687P-201ENST00000516443 89 ntBASIC1.62□□□□□ -2.15
CHMP3Q9Y3E7 MIR6078-201ENST00000611069 100 ntBASIC1.62□□□□□ -2.15
CHMP3Q9Y3E7 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
CHMP3Q9Y3E7 SNORD124-201ENST00000459577 104 ntBASIC1.61□□□□□ -2.15
CHMP3Q9Y3E7 Y_RNA.681-201ENST00000516445 113 ntBASIC1.61□□□□□ -2.15
CHMP3Q9Y3E7 MIR3920-201ENST00000581751 86 ntBASIC1.61□□□□□ -2.15
CHMP3Q9Y3E7 Y_RNA.36-201ENST00000362602 112 ntBASIC1.6□□□□□ -2.15
CHMP3Q9Y3E7 RNU6-1335P-201ENST00000365426 107 ntBASIC1.6□□□□□ -2.15
CHMP3Q9Y3E7 RNU6-1126P-201ENST00000384002 107 ntBASIC1.6□□□□□ -2.15
CHMP3Q9Y3E7 SNORA40.6-201ENST00000391153 128 ntBASIC1.6□□□□□ -2.15
CHMP3Q9Y3E7 RNA5SP247-201ENST00000411181 105 ntBASIC1.6□□□□□ -2.15
CHMP3Q9Y3E7 RNU6-1057P-201ENST00000517162 102 ntBASIC1.6□□□□□ -2.15
CHMP3Q9Y3E7 MIR8070-201ENST00000616510 88 ntBASIC1.6□□□□□ -2.15
CHMP3Q9Y3E7 Y_RNA.258-201ENST00000364613 105 ntBASIC1.59□□□□□ -2.15
CHMP3Q9Y3E7 RNU6-392P-201ENST00000364926 101 ntBASIC1.59□□□□□ -2.15
CHMP3Q9Y3E7 SNORD115-44-201ENST00000365391 82 ntBASIC1.59□□□□□ -2.15
CHMP3Q9Y3E7 AC114801.3-201ENST00000510231 177 ntBASIC1.59□□□□□ -2.15
CHMP3Q9Y3E7 AC097510.1-201ENST00000510945 133 ntBASIC1.59□□□□□ -2.15
CHMP3Q9Y3E7 U6.81-201ENST00000612550 106 ntBASIC1.59□□□□□ -2.15
CHMP3Q9Y3E7 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.59□□□□□ -2.15
CHMP3Q9Y3E7 MIR7974-201ENST00000615835 79 ntBASIC1.59□□□□□ -2.15
CHMP3Q9Y3E7 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
CHMP3Q9Y3E7 SNORA8.1-201ENST00000384250 140 ntBASIC1.58□□□□□ -2.16
CHMP3Q9Y3E7 SNORD105-201ENST00000386910 85 ntBASIC1.58□□□□□ -2.16
CHMP3Q9Y3E7 MIR942-201ENST00000401111 86 ntBASIC1.58□□□□□ -2.16
CHMP3Q9Y3E7 RNU6-1110P-201ENST00000516462 101 ntBASIC1.58□□□□□ -2.16
CHMP3Q9Y3E7 MIR3660-201ENST00000584845 100 ntBASIC1.58□□□□□ -2.16
CHMP3Q9Y3E7 RNA5SP117-201ENST00000365294 118 ntBASIC1.57□□□□□ -2.16
CHMP3Q9Y3E7 Y_RNA.606-201ENST00000410579 103 ntBASIC1.57□□□□□ -2.16
CHMP3Q9Y3E7 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.57□□□□□ -2.16
CHMP3Q9Y3E7 MIR19B1-201ENST00000384829 87 ntBASIC1.56□□□□□ -2.16
CHMP3Q9Y3E7 RNU6-1177P-201ENST00000391058 104 ntBASIC1.56□□□□□ -2.16
CHMP3Q9Y3E7 RNU6-587P-201ENST00000391282 106 ntBASIC1.56□□□□□ -2.16
CHMP3Q9Y3E7 RNU2-59P-201ENST00000410482 191 ntBASIC1.56□□□□□ -2.16
CHMP3Q9Y3E7 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.56□□□□□ -2.16
CHMP3Q9Y3E7 RNU6-1241P-201ENST00000384536 107 ntBASIC1.55□□□□□ -2.16
CHMP3Q9Y3E7 MIR758-201ENST00000390227 88 ntBASIC1.55□□□□□ -2.16
CHMP3Q9Y3E7 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.55□□□□□ -2.16
CHMP3Q9Y3E7 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
CHMP3Q9Y3E7 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.54□□□□□ -2.16
CHMP3Q9Y3E7 FABP5P4-201ENST00000437203 171 ntBASIC1.54□□□□□ -2.16
CHMP3Q9Y3E7 RNU6-634P-201ENST00000459134 106 ntBASIC1.54□□□□□ -2.16
CHMP3Q9Y3E7 AC068338.1-201ENST00000565567 176 ntBASIC1.54□□□□□ -2.16
CHMP3Q9Y3E7 MIR4773-1-201ENST00000637203 78 ntBASIC1.54□□□□□ -2.16
CHMP3Q9Y3E7 Y_RNA.226-201ENST00000364337 114 ntBASIC1.53□□□□□ -2.16
CHMP3Q9Y3E7 RNU6-382P-201ENST00000365181 106 ntBASIC1.53□□□□□ -2.16
CHMP3Q9Y3E7 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
CHMP3Q9Y3E7 U7.7-201ENST00000459276 60 ntBASIC1.53□□□□□ -2.16
CHMP3Q9Y3E7 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
CHMP3Q9Y3E7 AC244669.1-204ENST00000621564 178 ntBASIC1.53□□□□□ -2.16
CHMP3Q9Y3E7 AC067863.3-201ENST00000624172 122 ntBASIC1.53□□□□□ -2.16
CHMP3Q9Y3E7 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.17
CHMP3Q9Y3E7 RNU6-681P-201ENST00000364012 104 ntBASIC1.52□□□□□ -2.17
CHMP3Q9Y3E7 SNORD28-201ENST00000384706 75 ntBASIC1.52□□□□□ -2.17
CHMP3Q9Y3E7 MIR519E-201ENST00000385075 84 ntBASIC1.52□□□□□ -2.17
CHMP3Q9Y3E7 RNU6-788P-201ENST00000390967 104 ntBASIC1.52□□□□□ -2.17
CHMP3Q9Y3E7 U3.27-201ENST00000391237 200 ntBASIC1.52□□□□□ -2.17
CHMP3Q9Y3E7 AL078603.1-201ENST00000603824 313 ntBASIC1.52□□□□□ -2.17
CHMP3Q9Y3E7 SNORD115-31-201ENST00000365318 82 ntBASIC1.51□□□□□ -2.17
CHMP3Q9Y3E7 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
CHMP3Q9Y3E7 SNORD18A-201ENST00000363753 72 ntBASIC1.5□□□□□ -2.17
CHMP3Q9Y3E7 MIR573-201ENST00000384964 99 ntBASIC1.5□□□□□ -2.17
CHMP3Q9Y3E7 MIR617-201ENST00000385030 97 ntBASIC1.5□□□□□ -2.17
CHMP3Q9Y3E7 MIR154-201ENST00000385243 84 ntBASIC1.5□□□□□ -2.17
CHMP3Q9Y3E7 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.5□□□□□ -2.17
CHMP3Q9Y3E7 RNU6-871P-201ENST00000516122 100 ntBASIC1.5□□□□□ -2.17
CHMP3Q9Y3E7 MIR3612-201ENST00000579753 87 ntBASIC1.5□□□□□ -2.17
CHMP3Q9Y3E7 MIR3675-201ENST00000583661 73 ntBASIC1.5□□□□□ -2.17
CHMP3Q9Y3E7 MIR1287-201ENST00000408492 90 ntBASIC1.49□□□□□ -2.17
CHMP3Q9Y3E7 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.49□□□□□ -2.17
CHMP3Q9Y3E7 RNU6-469P-201ENST00000516253 101 ntBASIC1.49□□□□□ -2.17
CHMP3Q9Y3E7 MIR3678-201ENST00000578455 94 ntBASIC1.49□□□□□ -2.17
CHMP3Q9Y3E7 MIR4639-201ENST00000584938 69 ntBASIC1.49□□□□□ -2.17
CHMP3Q9Y3E7 RNU6-540P-201ENST00000384622 101 ntBASIC1.48□□□□□ -2.17
CHMP3Q9Y3E7 MIR150-201ENST00000385048 84 ntBASIC1.48□□□□□ -2.17
CHMP3Q9Y3E7 RNA5SP102-201ENST00000516865 106 ntBASIC1.48□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 217.3 ms