Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 MTND3P22-201ENST00000510932 243 ntBASIC-3.21□□□□□ -2.92
SCAPERQ9BY12 RNU6-1174P-201ENST00000517278 101 ntBASIC-3.21□□□□□ -2.92
SCAPERQ9BY12 UBE2WP1-201ENST00000362030 340 ntBASIC-3.22□□□□□ -2.93
SCAPERQ9BY12 RNU4-90P-201ENST00000362773 141 ntBASIC-3.22□□□□□ -2.93
SCAPERQ9BY12 RNU6-1152P-201ENST00000384576 107 ntBASIC-3.22□□□□□ -2.93
SCAPERQ9BY12 RNU6-780P-201ENST00000391030 104 ntBASIC-3.22□□□□□ -2.93
SCAPERQ9BY12 Y_RNA.584-201ENST00000391090 114 ntBASIC-3.22□□□□□ -2.93
SCAPERQ9BY12 RNU6-101P-201ENST00000410323 104 ntBASIC-3.22□□□□□ -2.93
SCAPERQ9BY12 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-3.22□□□□□ -2.93
SCAPERQ9BY12 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-3.22□□□□□ -2.93
SCAPERQ9BY12 Y_RNA.83-201ENST00000363005 113 ntBASIC-3.23□□□□□ -2.93
SCAPERQ9BY12 Y_RNA.344-201ENST00000365381 112 ntBASIC-3.23□□□□□ -2.93
SCAPERQ9BY12 Y_RNA.396-201ENST00000383949 103 ntBASIC-3.23□□□□□ -2.93
SCAPERQ9BY12 Y_RNA.419-201ENST00000384041 102 ntBASIC-3.23□□□□□ -2.93
SCAPERQ9BY12 RNU6-211P-201ENST00000384047 107 ntBASIC-3.23□□□□□ -2.93
SCAPERQ9BY12 SNORD19B.1-201ENST00000630615 80 ntBASIC-3.23□□□□□ -2.93
SCAPERQ9BY12 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC-3.24□□□□□ -2.93
SCAPERQ9BY12 SNORD38.1-201ENST00000363863 68 ntBASIC-3.25□□□□□ -2.93
SCAPERQ9BY12 Y_RNA.793-201ENST00000411222 111 ntBASIC-3.25□□□□□ -2.93
SCAPERQ9BY12 RNU6-518P-201ENST00000516056 96 ntBASIC-3.25□□□□□ -2.93
SCAPERQ9BY12 MIRLET7F1-201ENST00000362202 87 ntBASIC-3.26□□□□□ -2.93
SCAPERQ9BY12 RNU6-1109P-201ENST00000391187 107 ntBASIC-3.26□□□□□ -2.93
SCAPERQ9BY12 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC-3.26□□□□□ -2.93
SCAPERQ9BY12 RNU6-65P-201ENST00000516332 98 ntBASIC-3.26□□□□□ -2.93
SCAPERQ9BY12 Y_RNA.701-201ENST00000516812 110 ntBASIC-3.26□□□□□ -2.93
SCAPERQ9BY12 MIR4536-1-201ENST00000583537 88 ntBASIC-3.26□□□□□ -2.93
SCAPERQ9BY12 AL138825.1-201ENST00000618587 192 ntBASIC-3.26□□□□□ -2.93
SCAPERQ9BY12 MTND5P26-201ENST00000426018 1752 ntBASIC-3.26□□□□□ -2.93
SCAPERQ9BY12 Y_RNA.64-201ENST00000362845 102 ntBASIC-3.27□□□□□ -2.93
SCAPERQ9BY12 Y_RNA.602-201ENST00000410535 92 ntBASIC-3.27□□□□□ -2.93
SCAPERQ9BY12 MIR3140-201ENST00000583685 90 ntBASIC-3.27□□□□□ -2.93
SCAPERQ9BY12 AC015540.1-201ENST00000615828 501 ntBASIC-3.27□□□□□ -2.93
SCAPERQ9BY12 Y_RNA.781-201ENST00000620301 103 ntBASIC-3.27□□□□□ -2.93
SCAPERQ9BY12 RNU6-246P-201ENST00000384702 107 ntBASIC-3.27□□□□□ -2.93
SCAPERQ9BY12 RNU6-1267P-201ENST00000410747 107 ntBASIC-3.27□□□□□ -2.93
SCAPERQ9BY12 AC119751.7-201ENST00000600494 245 ntBASIC-3.27□□□□□ -2.93
SCAPERQ9BY12 MIR4272-201ENST00000635924 64 ntBASIC-3.27□□□□□ -2.93
SCAPERQ9BY12 SNORA25.1-201ENST00000362326 128 ntBASIC-3.28□□□□□ -2.94
SCAPERQ9BY12 Y_RNA.646-201ENST00000410980 101 ntBASIC-3.28□□□□□ -2.94
SCAPERQ9BY12 RNU6-956P-201ENST00000458868 103 ntBASIC-3.28□□□□□ -2.94
SCAPERQ9BY12 SNORA24B-201ENST00000384176 131 ntBASIC-3.29□□□□□ -2.94
SCAPERQ9BY12 Y_RNA.773-201ENST00000607168 90 ntBASIC-3.29□□□□□ -2.94
SCAPERQ9BY12 DLEU2_1.1-201ENST00000612089 120 ntBASIC-3.29□□□□□ -2.94
SCAPERQ9BY12 DLEU2_1.2-201ENST00000614667 120 ntBASIC-3.29□□□□□ -2.94
SCAPERQ9BY12 AL512310.12-203ENST00000640543 90 ntBASIC-3.29□□□□□ -2.94
SCAPERQ9BY12 Y_RNA.82-201ENST00000363000 102 ntBASIC-3.3□□□□□ -2.94
SCAPERQ9BY12 Y_RNA.92-201ENST00000363043 102 ntBASIC-3.3□□□□□ -2.94
SCAPERQ9BY12 Y_RNA.235-201ENST00000364412 102 ntBASIC-3.3□□□□□ -2.94
SCAPERQ9BY12 Y_RNA.306-201ENST00000365015 102 ntBASIC-3.3□□□□□ -2.94
SCAPERQ9BY12 Y_RNA.308-201ENST00000365043 101 ntBASIC-3.3□□□□□ -2.94
SCAPERQ9BY12 Y_RNA.312-201ENST00000365089 102 ntBASIC-3.3□□□□□ -2.94
SCAPERQ9BY12 Y_RNA.322-201ENST00000365151 102 ntBASIC-3.3□□□□□ -2.94
SCAPERQ9BY12 RNU6-1283P-201ENST00000365314 105 ntBASIC-3.3□□□□□ -2.94
SCAPERQ9BY12 Y_RNA.394-201ENST00000383942 103 ntBASIC-3.3□□□□□ -2.94
SCAPERQ9BY12 MIR203A-201ENST00000384836 110 ntBASIC-3.3□□□□□ -2.94
SCAPERQ9BY12 RNU6-630P-201ENST00000391258 106 ntBASIC-3.3□□□□□ -2.94
SCAPERQ9BY12 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC-3.3□□□□□ -2.94
SCAPERQ9BY12 Y_RNA.650-201ENST00000459002 102 ntBASIC-3.3□□□□□ -2.94
SCAPERQ9BY12 Y_RNA.777-201ENST00000516982 102 ntBASIC-3.3□□□□□ -2.94
SCAPERQ9BY12 Y_RNA.771-201ENST00000598668 102 ntBASIC-3.3□□□□□ -2.94
SCAPERQ9BY12 SNX3P1Y-201ENST00000615757 176 ntBASIC-3.3□□□□□ -2.94
SCAPERQ9BY12 AL603755.1-201ENST00000619504 163 ntBASIC-3.3□□□□□ -2.94
SCAPERQ9BY12 Y_RNA.789-201ENST00000622480 102 ntBASIC-3.3□□□□□ -2.94
SCAPERQ9BY12 RNU6-326P-201ENST00000365480 107 ntBASIC-3.31□□□□□ -2.94
SCAPERQ9BY12 RNU6-132P-201ENST00000383863 107 ntBASIC-3.31□□□□□ -2.94
SCAPERQ9BY12 Y_RNA.463-201ENST00000384271 102 ntBASIC-3.31□□□□□ -2.94
SCAPERQ9BY12 RNU2-38P-201ENST00000410856 79 ntBASIC-3.31□□□□□ -2.94
SCAPERQ9BY12 AC097484.2-201ENST00000509147 251 ntBASIC-3.31□□□□□ -2.94
SCAPERQ9BY12 RNU6-803P-201ENST00000516034 102 ntBASIC-3.31□□□□□ -2.94
SCAPERQ9BY12 RNU6-415P-201ENST00000516252 97 ntBASIC-3.31□□□□□ -2.94
SCAPERQ9BY12 Y_RNA.695-201ENST00000516715 107 ntBASIC-3.31□□□□□ -2.94
SCAPERQ9BY12 RNU7-6P-201ENST00000516845 62 ntBASIC-3.31□□□□□ -2.94
SCAPERQ9BY12 AC006254.2-201ENST00000603259 279 ntBASIC-3.31□□□□□ -2.94
SCAPERQ9BY12 RNU6-890P-201ENST00000384121 107 ntBASIC-3.32□□□□□ -2.94
SCAPERQ9BY12 RNU6-310P-201ENST00000384655 107 ntBASIC-3.32□□□□□ -2.94
SCAPERQ9BY12 MIR521-2-201ENST00000384818 87 ntBASIC-3.32□□□□□ -2.94
SCAPERQ9BY12 RNU6-510P-201ENST00000391239 108 ntBASIC-3.32□□□□□ -2.94
SCAPERQ9BY12 AL021921.1-201ENST00000442774 93 ntBASIC-3.32□□□□□ -2.94
SCAPERQ9BY12 AL121914.1-201ENST00000450188 156 ntBASIC-3.32□□□□□ -2.94
SCAPERQ9BY12 AC037487.3-201ENST00000606668 112 ntBASIC-3.32□□□□□ -2.94
SCAPERQ9BY12 RNU6-861P-201ENST00000516745 106 ntBASIC-3.33□□□□□ -2.94
SCAPERQ9BY12 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-3.33□□□□□ -2.94
SCAPERQ9BY12 AL132765.2-201ENST00000610812 351 ntBASIC-3.33□□□□□ -2.94
SCAPERQ9BY12 MIR6509-201ENST00000614603 85 ntBASIC-3.33□□□□□ -2.94
SCAPERQ9BY12 AL606534.2-204ENST00000635008 178 ntBASIC-3.33□□□□□ -2.94
SCAPERQ9BY12 RNU6-130P-201ENST00000411112 103 ntBASIC-3.34□□□□□ -2.94
SCAPERQ9BY12 MTATP6P21-201ENST00000440681 189 ntBASIC-3.34□□□□□ -2.94
SCAPERQ9BY12 RNU6-1313P-201ENST00000362622 102 ntBASIC-3.35□□□□□ -2.95
SCAPERQ9BY12 Y_RNA.527-201ENST00000384573 102 ntBASIC-3.35□□□□□ -2.95
SCAPERQ9BY12 RNU6-976P-201ENST00000516086 111 ntBASIC-3.35□□□□□ -2.95
SCAPERQ9BY12 RNU6-1046P-201ENST00000516538 107 ntBASIC-3.35□□□□□ -2.95
SCAPERQ9BY12 Y_RNA.721-201ENST00000517207 102 ntBASIC-3.35□□□□□ -2.95
SCAPERQ9BY12 MIR376A1-201ENST00000616574 68 ntBASIC-3.35□□□□□ -2.95
SCAPERQ9BY12 RNU6-1039P-201ENST00000383931 107 ntBASIC-3.36□□□□□ -2.95
SCAPERQ9BY12 RNU6-141P-201ENST00000410499 105 ntBASIC-3.36□□□□□ -2.95
SCAPERQ9BY12 Y_RNA.658-201ENST00000515990 97 ntBASIC-3.36□□□□□ -2.95
SCAPERQ9BY12 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-3.36□□□□□ -2.95
SCAPERQ9BY12 RNU6-259P-201ENST00000383999 107 ntBASIC-3.36□□□□□ -2.95
SCAPERQ9BY12 RNU6-1042P-201ENST00000384204 107 ntBASIC-3.36□□□□□ -2.95
SCAPERQ9BY12 Y_RNA.483-201ENST00000384380 101 ntBASIC-3.36□□□□□ -2.95
Retrieved 100 of 98,524 protein–RNA pairs in 190.1 ms