Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SNORD101-201ENST00000384027 73 ntBASIC0.79□□□□□ -2.28
TRAIPQ9BWF2 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.79□□□□□ -2.28
TRAIPQ9BWF2 RNU2-59P-201ENST00000410482 191 ntBASIC0.79□□□□□ -2.28
TRAIPQ9BWF2 RNA5SP436-201ENST00000516020 115 ntBASIC0.79□□□□□ -2.28
TRAIPQ9BWF2 MIR3920-201ENST00000581751 86 ntBASIC0.79□□□□□ -2.28
TRAIPQ9BWF2 MIR6866-201ENST00000638146 69 ntBASIC0.79□□□□□ -2.28
TRAIPQ9BWF2 AC098934.3-201ENST00000430450 190 ntBASIC0.78□□□□□ -2.28
TRAIPQ9BWF2 RNU6-863P-201ENST00000515989 104 ntBASIC0.78□□□□□ -2.28
TRAIPQ9BWF2 Y_RNA.239-201ENST00000364444 113 ntBASIC0.77□□□□□ -2.29
TRAIPQ9BWF2 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.77□□□□□ -2.29
TRAIPQ9BWF2 RNU6-1126P-201ENST00000384002 107 ntBASIC0.76□□□□□ -2.29
TRAIPQ9BWF2 MIR548U-201ENST00000390728 81 ntBASIC0.76□□□□□ -2.29
TRAIPQ9BWF2 MIR6513-201ENST00000621188 64 ntBASIC0.76□□□□□ -2.29
TRAIPQ9BWF2 U6.100-201ENST00000636230 99 ntBASIC0.76□□□□□ -2.29
TRAIPQ9BWF2 AC073869.9-201ENST00000641610 120 ntBASIC0.76□□□□□ -2.29
TRAIPQ9BWF2 Y_RNA.348-201ENST00000365403 103 ntBASIC0.75□□□□□ -2.29
TRAIPQ9BWF2 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.75□□□□□ -2.29
TRAIPQ9BWF2 RNU6-664P-201ENST00000362381 107 ntBASIC0.74□□□□□ -2.29
TRAIPQ9BWF2 SNORD114-26-201ENST00000363543 72 ntBASIC0.74□□□□□ -2.29
TRAIPQ9BWF2 Y_RNA.220-201ENST00000364244 109 ntBASIC0.74□□□□□ -2.29
TRAIPQ9BWF2 MIR508-201ENST00000384857 115 ntBASIC0.74□□□□□ -2.29
TRAIPQ9BWF2 RNA5SP89-201ENST00000410300 108 ntBASIC0.74□□□□□ -2.29
TRAIPQ9BWF2 RNU6-287P-201ENST00000516230 98 ntBASIC0.74□□□□□ -2.29
TRAIPQ9BWF2 MIR617-201ENST00000385030 97 ntBASIC0.73□□□□□ -2.29
TRAIPQ9BWF2 AC069271.1-201ENST00000445577 156 ntBASIC0.73□□□□□ -2.29
TRAIPQ9BWF2 MIR2113-201ENST00000459007 91 ntBASIC0.72□□□□□ -2.29
TRAIPQ9BWF2 RNA5SP480-201ENST00000516840 109 ntBASIC0.72□□□□□ -2.29
TRAIPQ9BWF2 AL162376.1-201ENST00000624117 175 ntBASIC0.72□□□□□ -2.29
TRAIPQ9BWF2 MIR216B-201ENST00000390186 82 ntBASIC0.71□□□□□ -2.3
TRAIPQ9BWF2 RNU6-269P-201ENST00000391077 97 ntBASIC0.71□□□□□ -2.3
TRAIPQ9BWF2 Y_RNA.609-201ENST00000410669 89 ntBASIC0.71□□□□□ -2.3
TRAIPQ9BWF2 MALAT1.1-201ENST00000618249 95 ntBASIC0.71□□□□□ -2.3
TRAIPQ9BWF2 Y_RNA.207-201ENST00000364142 106 ntBASIC0.7□□□□□ -2.3
TRAIPQ9BWF2 Y_RNA.290-201ENST00000364879 114 ntBASIC0.7□□□□□ -2.3
TRAIPQ9BWF2 RNU7-85P-201ENST00000458851 63 ntBASIC0.7□□□□□ -2.3
TRAIPQ9BWF2 SNORD4B-201ENST00000459083 72 ntBASIC0.7□□□□□ -2.3
TRAIPQ9BWF2 MIR4696-201ENST00000581431 70 ntBASIC0.7□□□□□ -2.3
TRAIPQ9BWF2 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.7□□□□□ -2.3
TRAIPQ9BWF2 SNORA68.3-201ENST00000515906 83 ntBASIC0.69□□□□□ -2.3
TRAIPQ9BWF2 SNORA2A-201ENST00000383885 135 ntBASIC0.68□□□□□ -2.3
TRAIPQ9BWF2 Y_RNA.423-201ENST00000384057 113 ntBASIC0.68□□□□□ -2.3
TRAIPQ9BWF2 MIR936-201ENST00000401264 98 ntBASIC0.68□□□□□ -2.3
TRAIPQ9BWF2 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.68□□□□□ -2.3
TRAIPQ9BWF2 RNU6-935P-201ENST00000410371 100 ntBASIC0.68□□□□□ -2.3
TRAIPQ9BWF2 MTRNR2L2-201ENST00000604882 87 ntBASIC0.68□□□□□ -2.3
TRAIPQ9BWF2 U7.6-201ENST00000610841 64 ntBASIC0.68□□□□□ -2.3
TRAIPQ9BWF2 AC090625.1-201ENST00000357130 210 ntBASIC0.67□□□□□ -2.3
TRAIPQ9BWF2 MIRLET7D-201ENST00000362263 87 ntBASIC0.67□□□□□ -2.3
TRAIPQ9BWF2 SNORD44.1-201ENST00000363202 61 ntBASIC0.67□□□□□ -2.3
TRAIPQ9BWF2 Y_RNA.190-201ENST00000363964 101 ntBASIC0.67□□□□□ -2.3
TRAIPQ9BWF2 RNU6-811P-201ENST00000384069 107 ntBASIC0.67□□□□□ -2.3
TRAIPQ9BWF2 RNU6-905P-201ENST00000384434 107 ntBASIC0.67□□□□□ -2.3
TRAIPQ9BWF2 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.67□□□□□ -2.3
TRAIPQ9BWF2 RNU6-229P-201ENST00000516614 102 ntBASIC0.67□□□□□ -2.3
TRAIPQ9BWF2 RNA5SP347-201ENST00000362445 119 ntBASIC0.66□□□□□ -2.3
TRAIPQ9BWF2 RNU6-75P-201ENST00000515944 104 ntBASIC0.66□□□□□ -2.3
TRAIPQ9BWF2 RNU6-848P-201ENST00000515948 107 ntBASIC0.66□□□□□ -2.3
TRAIPQ9BWF2 RNU6-617P-201ENST00000516147 107 ntBASIC0.66□□□□□ -2.3
TRAIPQ9BWF2 RNU6-473P-201ENST00000516164 107 ntBASIC0.66□□□□□ -2.3
TRAIPQ9BWF2 RNU6-1049P-201ENST00000516414 107 ntBASIC0.66□□□□□ -2.3
TRAIPQ9BWF2 RN7SL793P-201ENST00000583259 296 ntBASIC0.66□□□□□ -2.3
TRAIPQ9BWF2 RNA5SP193-201ENST00000410353 107 ntBASIC0.65□□□□□ -2.31
TRAIPQ9BWF2 AC006210.1-201ENST00000424882 111 ntBASIC0.65□□□□□ -2.31
TRAIPQ9BWF2 MIR4711-201ENST00000578274 70 ntBASIC0.65□□□□□ -2.31
TRAIPQ9BWF2 uc_338.17-201ENST00000619633 179 ntBASIC0.65□□□□□ -2.31
TRAIPQ9BWF2 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.65□□□□□ -2.31
TRAIPQ9BWF2 MIRLET7F1-201ENST00000362202 87 ntBASIC0.64□□□□□ -2.31
TRAIPQ9BWF2 RNU6-640P-201ENST00000363693 105 ntBASIC0.64□□□□□ -2.31
TRAIPQ9BWF2 MIR216A-201ENST00000385063 110 ntBASIC0.64□□□□□ -2.31
TRAIPQ9BWF2 AC026421.1-201ENST00000519101 163 ntBASIC0.64□□□□□ -2.31
TRAIPQ9BWF2 Y_RNA.36-201ENST00000362602 112 ntBASIC0.63□□□□□ -2.31
TRAIPQ9BWF2 RNU4-32P-201ENST00000363404 141 ntBASIC0.63□□□□□ -2.31
TRAIPQ9BWF2 MIR7-2-201ENST00000384970 110 ntBASIC0.63□□□□□ -2.31
TRAIPQ9BWF2 MIR519E-201ENST00000385075 84 ntBASIC0.63□□□□□ -2.31
TRAIPQ9BWF2 Y_RNA.694-201ENST00000516677 117 ntBASIC0.63□□□□□ -2.31
TRAIPQ9BWF2 MIR5706-201ENST00000579841 80 ntBASIC0.63□□□□□ -2.31
TRAIPQ9BWF2 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.62□□□□□ -2.31
TRAIPQ9BWF2 RNA5SP499-201ENST00000363982 119 ntBASIC0.62□□□□□ -2.31
TRAIPQ9BWF2 MIR92A1-201ENST00000385233 78 ntBASIC0.62□□□□□ -2.31
TRAIPQ9BWF2 RNY4P30-201ENST00000410216 95 ntBASIC0.62□□□□□ -2.31
TRAIPQ9BWF2 MIR4752-201ENST00000579672 72 ntBASIC0.62□□□□□ -2.31
TRAIPQ9BWF2 SNORD116-22-201ENST00000384430 92 ntBASIC0.61□□□□□ -2.31
TRAIPQ9BWF2 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
TRAIPQ9BWF2 SNORD110-201ENST00000408189 75 ntBASIC0.61□□□□□ -2.31
TRAIPQ9BWF2 NAMPTP3-201ENST00000569273 224 ntBASIC0.61□□□□□ -2.31
TRAIPQ9BWF2 MIR4460-201ENST00000577862 86 ntBASIC0.61□□□□□ -2.31
TRAIPQ9BWF2 MIR548AG2-201ENST00000581228 64 ntBASIC0.61□□□□□ -2.31
TRAIPQ9BWF2 AC104996.3-201ENST00000590718 94 ntBASIC0.61□□□□□ -2.31
TRAIPQ9BWF2 RNA5SP62-201ENST00000363457 110 ntBASIC0.59□□□□□ -2.31
TRAIPQ9BWF2 RNU1-141P-201ENST00000364623 158 ntBASIC0.59□□□□□ -2.31
TRAIPQ9BWF2 Y_RNA.491-201ENST00000384417 107 ntBASIC0.59□□□□□ -2.31
TRAIPQ9BWF2 MIR451A-201ENST00000385059 72 ntBASIC0.59□□□□□ -2.31
TRAIPQ9BWF2 MIR1236-201ENST00000408340 102 ntBASIC0.59□□□□□ -2.31
TRAIPQ9BWF2 AC073261.1-201ENST00000429409 121 ntBASIC0.59□□□□□ -2.31
TRAIPQ9BWF2 RNA5SP484-201ENST00000458857 111 ntBASIC0.59□□□□□ -2.31
TRAIPQ9BWF2 MIR3064-201ENST00000581130 66 ntBASIC0.59□□□□□ -2.31
TRAIPQ9BWF2 MIR103A1-201ENST00000362165 78 ntBASIC0.58□□□□□ -2.32
TRAIPQ9BWF2 RNY4P3-201ENST00000365254 95 ntBASIC0.58□□□□□ -2.32
TRAIPQ9BWF2 MIR760-201ENST00000390220 80 ntBASIC0.58□□□□□ -2.32
TRAIPQ9BWF2 U3.27-201ENST00000391237 200 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 225 ms