Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 SCARNA23-201ENST00000516060 130 ntBASIC0.26□□□□□ -2.37
USP28Q96RU2 Y_RNA.283-201ENST00000364798 112 ntBASIC0.25□□□□□ -2.37
USP28Q96RU2 RNU6-215P-201ENST00000365169 102 ntBASIC0.25□□□□□ -2.37
USP28Q96RU2 RNU6-756P-201ENST00000383997 107 ntBASIC0.25□□□□□ -2.37
USP28Q96RU2 RNU6-813P-201ENST00000384691 107 ntBASIC0.25□□□□□ -2.37
USP28Q96RU2 AC073261.1-201ENST00000429409 121 ntBASIC0.25□□□□□ -2.37
USP28Q96RU2 MIR5093-201ENST00000583199 100 ntBASIC0.25□□□□□ -2.37
USP28Q96RU2 AC010487.4-201ENST00000637027 61 ntBASIC0.25□□□□□ -2.37
USP28Q96RU2 Y_RNA.10-201ENST00000362371 110 ntBASIC0.24□□□□□ -2.37
USP28Q96RU2 RNU6-1327P-201ENST00000365302 105 ntBASIC0.24□□□□□ -2.37
USP28Q96RU2 MIR760-201ENST00000390220 80 ntBASIC0.24□□□□□ -2.37
USP28Q96RU2 RNU6-644P-201ENST00000391155 98 ntBASIC0.24□□□□□ -2.37
USP28Q96RU2 RNU7-85P-201ENST00000458851 63 ntBASIC0.24□□□□□ -2.37
USP28Q96RU2 RNU6-75P-201ENST00000515944 104 ntBASIC0.24□□□□□ -2.37
USP28Q96RU2 RNU7-129P-201ENST00000516128 62 ntBASIC0.24□□□□□ -2.37
USP28Q96RU2 RNU6-287P-201ENST00000516230 98 ntBASIC0.24□□□□□ -2.37
USP28Q96RU2 MIR4439-201ENST00000583746 80 ntBASIC0.24□□□□□ -2.37
USP28Q96RU2 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.24□□□□□ -2.37
USP28Q96RU2 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
USP28Q96RU2 MIR519E-201ENST00000385075 84 ntBASIC0.23□□□□□ -2.37
USP28Q96RU2 RNU6-466P-201ENST00000391224 103 ntBASIC0.23□□□□□ -2.37
USP28Q96RU2 MIR2113-201ENST00000459007 91 ntBASIC0.23□□□□□ -2.37
USP28Q96RU2 NAMPTP3-201ENST00000569273 224 ntBASIC0.23□□□□□ -2.37
USP28Q96RU2 MIR1273G-201ENST00000577677 100 ntBASIC0.23□□□□□ -2.37
USP28Q96RU2 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC0.23□□□□□ -2.37
USP28Q96RU2 RNU6-766P-201ENST00000362478 107 ntBASIC0.22□□□□□ -2.37
USP28Q96RU2 Y_RNA.540-201ENST00000384638 111 ntBASIC0.22□□□□□ -2.37
USP28Q96RU2 MIR7-2-201ENST00000384970 110 ntBASIC0.22□□□□□ -2.37
USP28Q96RU2 Y_RNA.648-201ENST00000459455 110 ntBASIC0.22□□□□□ -2.37
USP28Q96RU2 RNU7-61P-201ENST00000515897 61 ntBASIC0.22□□□□□ -2.37
USP28Q96RU2 AC069113.3-201ENST00000521019 150 ntBASIC0.22□□□□□ -2.37
USP28Q96RU2 MTRNR2L2-201ENST00000604882 87 ntBASIC0.22□□□□□ -2.37
USP28Q96RU2 MIR499B-201ENST00000636498 73 ntBASIC0.22□□□□□ -2.37
USP28Q96RU2 Y_RNA.205-201ENST00000364128 113 ntBASIC0.21□□□□□ -2.38
USP28Q96RU2 Y_RNA.207-201ENST00000364142 106 ntBASIC0.21□□□□□ -2.38
USP28Q96RU2 SNORA2A-201ENST00000383885 135 ntBASIC0.21□□□□□ -2.38
USP28Q96RU2 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.21□□□□□ -2.38
USP28Q96RU2 Y_RNA.596-201ENST00000410462 109 ntBASIC0.21□□□□□ -2.38
USP28Q96RU2 MIR4696-201ENST00000581431 70 ntBASIC0.21□□□□□ -2.38
USP28Q96RU2 MIR6779-201ENST00000617283 64 ntBASIC0.21□□□□□ -2.38
USP28Q96RU2 RNU6-44P-201ENST00000384045 107 ntBASIC0.2□□□□□ -2.38
USP28Q96RU2 MIR501-201ENST00000390204 84 ntBASIC0.2□□□□□ -2.38
USP28Q96RU2 RNU6-162P-201ENST00000516228 103 ntBASIC0.2□□□□□ -2.38
USP28Q96RU2 MIR548AI-201ENST00000579940 88 ntBASIC0.2□□□□□ -2.38
USP28Q96RU2 MIRLET7F1-201ENST00000362202 87 ntBASIC0.19□□□□□ -2.38
USP28Q96RU2 Y_RNA.107-201ENST00000363190 121 ntBASIC0.19□□□□□ -2.38
USP28Q96RU2 RNA5SP128-201ENST00000365305 116 ntBASIC0.19□□□□□ -2.38
USP28Q96RU2 SNORD115-44-201ENST00000365391 82 ntBASIC0.19□□□□□ -2.38
USP28Q96RU2 SNORD101-201ENST00000384027 73 ntBASIC0.19□□□□□ -2.38
USP28Q96RU2 MIR617-201ENST00000385030 97 ntBASIC0.19□□□□□ -2.38
USP28Q96RU2 RNU6-127P-201ENST00000390897 107 ntBASIC0.19□□□□□ -2.38
USP28Q96RU2 AC093423.1-201ENST00000440817 142 ntBASIC0.19□□□□□ -2.38
USP28Q96RU2 AL031737.1-201ENST00000450125 223 ntBASIC0.19□□□□□ -2.38
USP28Q96RU2 RNU6-919P-201ENST00000516731 104 ntBASIC0.19□□□□□ -2.38
USP28Q96RU2 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.19□□□□□ -2.38
USP28Q96RU2 RNU6-664P-201ENST00000362381 107 ntBASIC0.18□□□□□ -2.38
USP28Q96RU2 SNORA9.1-201ENST00000362412 131 ntBASIC0.18□□□□□ -2.38
USP28Q96RU2 RNU6-755P-201ENST00000364400 103 ntBASIC0.18□□□□□ -2.38
USP28Q96RU2 RNU1-141P-201ENST00000364623 158 ntBASIC0.18□□□□□ -2.38
USP28Q96RU2 RNU6-132P-201ENST00000383863 107 ntBASIC0.18□□□□□ -2.38
USP28Q96RU2 SNORD58A-201ENST00000383875 65 ntBASIC0.18□□□□□ -2.38
USP28Q96RU2 SNORD110-201ENST00000408189 75 ntBASIC0.18□□□□□ -2.38
USP28Q96RU2 RNU6-887P-201ENST00000410660 100 ntBASIC0.18□□□□□ -2.38
USP28Q96RU2 AL035461.1-201ENST00000421490 332 ntBASIC0.18□□□□□ -2.38
USP28Q96RU2 AC006210.1-201ENST00000424882 111 ntBASIC0.18□□□□□ -2.38
USP28Q96RU2 HMGN2P22-201ENST00000427588 175 ntBASIC0.18□□□□□ -2.38
USP28Q96RU2 SNORA62.5-201ENST00000516634 120 ntBASIC0.18□□□□□ -2.38
USP28Q96RU2 Y_RNA.705-201ENST00000516862 110 ntBASIC0.18□□□□□ -2.38
USP28Q96RU2 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.18□□□□□ -2.38
USP28Q96RU2 AC073869.9-201ENST00000641610 120 ntBASIC0.18□□□□□ -2.38
USP28Q96RU2 RNU6-509P-201ENST00000363519 107 ntBASIC0.17□□□□□ -2.38
USP28Q96RU2 MIR643-201ENST00000385267 97 ntBASIC0.17□□□□□ -2.38
USP28Q96RU2 MIR4514-201ENST00000581410 57 ntBASIC0.17□□□□□ -2.38
USP28Q96RU2 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.17□□□□□ -2.38
USP28Q96RU2 Y_RNA.818-201ENST00000618813 71 ntBASIC0.17□□□□□ -2.38
USP28Q96RU2 MIR924-201ENST00000638017 53 ntBASIC0.17□□□□□ -2.38
USP28Q96RU2 RNU6-1113P-201ENST00000384348 107 ntBASIC0.16□□□□□ -2.38
USP28Q96RU2 SNORD4B-201ENST00000459083 72 ntBASIC0.16□□□□□ -2.38
USP28Q96RU2 MIR4536-1-201ENST00000583537 88 ntBASIC0.16□□□□□ -2.38
USP28Q96RU2 MIR4473-201ENST00000583731 91 ntBASIC0.16□□□□□ -2.38
USP28Q96RU2 U7.3-201ENST00000616123 62 ntBASIC0.16□□□□□ -2.38
USP28Q96RU2 Y_RNA.93-201ENST00000363066 109 ntBASIC0.15□□□□□ -2.39
USP28Q96RU2 RNU6-147P-201ENST00000383983 107 ntBASIC0.15□□□□□ -2.39
USP28Q96RU2 RNU6-972P-201ENST00000391208 107 ntBASIC0.15□□□□□ -2.39
USP28Q96RU2 RNU7-74P-201ENST00000459104 62 ntBASIC0.15□□□□□ -2.39
USP28Q96RU2 RNU6-65P-201ENST00000516332 98 ntBASIC0.15□□□□□ -2.39
USP28Q96RU2 MIR8087-201ENST00000612745 78 ntBASIC0.15□□□□□ -2.39
USP28Q96RU2 Y_RNA.190-201ENST00000363964 101 ntBASIC0.14□□□□□ -2.39
USP28Q96RU2 MIR548H2-201ENST00000408874 88 ntBASIC0.14□□□□□ -2.39
USP28Q96RU2 MTATP8P2-201ENST00000435212 202 ntBASIC0.14□□□□□ -2.39
USP28Q96RU2 RNU6-848P-201ENST00000515948 107 ntBASIC0.14□□□□□ -2.39
USP28Q96RU2 RNU6-617P-201ENST00000516147 107 ntBASIC0.14□□□□□ -2.39
USP28Q96RU2 RNU6-473P-201ENST00000516164 107 ntBASIC0.14□□□□□ -2.39
USP28Q96RU2 RNU6-1049P-201ENST00000516414 107 ntBASIC0.14□□□□□ -2.39
USP28Q96RU2 RNU5B-6P-201ENST00000516765 68 ntBASIC0.14□□□□□ -2.39
USP28Q96RU2 AC026421.1-201ENST00000519101 163 ntBASIC0.14□□□□□ -2.39
USP28Q96RU2 MIR5706-201ENST00000579841 80 ntBASIC0.14□□□□□ -2.39
USP28Q96RU2 MIR4677-201ENST00000584153 80 ntBASIC0.14□□□□□ -2.39
USP28Q96RU2 MIR4315-1-201ENST00000636800 73 ntBASIC0.14□□□□□ -2.39
USP28Q96RU2 MIR4315-2-201ENST00000640925 73 ntBASIC0.14□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 169.8 ms