Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RNU6-1144P-201ENST00000384247 104 ntBASIC0.19□□□□□ -2.38
COL28A1Q2UY09 RNU6-476P-201ENST00000384726 107 ntBASIC0.19□□□□□ -2.38
COL28A1Q2UY09 RNU6-243P-201ENST00000391140 107 ntBASIC0.19□□□□□ -2.38
COL28A1Q2UY09 RNU7-74P-201ENST00000459104 62 ntBASIC0.19□□□□□ -2.38
COL28A1Q2UY09 RNU6-479P-201ENST00000516348 105 ntBASIC0.19□□□□□ -2.38
COL28A1Q2UY09 MIR4752-201ENST00000579672 72 ntBASIC0.19□□□□□ -2.38
COL28A1Q2UY09 SNORD114-31-201ENST00000363219 75 ntBASIC0.18□□□□□ -2.38
COL28A1Q2UY09 SNORA42.1-201ENST00000363515 137 ntBASIC0.18□□□□□ -2.38
COL28A1Q2UY09 RNU6-1107P-201ENST00000364817 104 ntBASIC0.18□□□□□ -2.38
COL28A1Q2UY09 RNA5SP128-201ENST00000365305 116 ntBASIC0.18□□□□□ -2.38
COL28A1Q2UY09 RNU6-1014P-201ENST00000383940 103 ntBASIC0.18□□□□□ -2.38
COL28A1Q2UY09 RNU6-269P-201ENST00000391077 97 ntBASIC0.18□□□□□ -2.38
COL28A1Q2UY09 RNU6-1064P-201ENST00000410626 104 ntBASIC0.18□□□□□ -2.38
COL28A1Q2UY09 RNU6-412P-201ENST00000516434 106 ntBASIC0.18□□□□□ -2.38
COL28A1Q2UY09 AP001180.6-201ENST00000584918 159 ntBASIC0.18□□□□□ -2.38
COL28A1Q2UY09 RNU6-834P-201ENST00000362367 110 ntBASIC0.17□□□□□ -2.38
COL28A1Q2UY09 RNU6-509P-201ENST00000363519 107 ntBASIC0.17□□□□□ -2.38
COL28A1Q2UY09 RNU6-1244P-201ENST00000363614 108 ntBASIC0.17□□□□□ -2.38
COL28A1Q2UY09 MIR760-201ENST00000390220 80 ntBASIC0.17□□□□□ -2.38
COL28A1Q2UY09 AC141557.1-201ENST00000540982 400 ntBASIC0.17□□□□□ -2.38
COL28A1Q2UY09 U7.6-201ENST00000610841 64 ntBASIC0.17□□□□□ -2.38
COL28A1Q2UY09 RNU6-1125P-201ENST00000363601 107 ntBASIC0.16□□□□□ -2.38
COL28A1Q2UY09 Y_RNA.163-201ENST00000363702 113 ntBASIC0.16□□□□□ -2.38
COL28A1Q2UY09 RNU6-480P-201ENST00000384332 107 ntBASIC0.16□□□□□ -2.38
COL28A1Q2UY09 MIR604-201ENST00000384880 94 ntBASIC0.16□□□□□ -2.38
COL28A1Q2UY09 MIR181B2-201ENST00000385004 89 ntBASIC0.16□□□□□ -2.38
COL28A1Q2UY09 RNU6-1154P-201ENST00000391001 104 ntBASIC0.16□□□□□ -2.38
COL28A1Q2UY09 AC109327.2-201ENST00000448339 378 ntBASIC0.16□□□□□ -2.38
COL28A1Q2UY09 Y_RNA.659-201ENST00000515994 113 ntBASIC0.16□□□□□ -2.38
COL28A1Q2UY09 RNU6-313P-201ENST00000516317 112 ntBASIC0.16□□□□□ -2.38
COL28A1Q2UY09 MIR4439-201ENST00000583746 80 ntBASIC0.16□□□□□ -2.38
COL28A1Q2UY09 MIR4768-201ENST00000585270 74 ntBASIC0.16□□□□□ -2.38
COL28A1Q2UY09 AC108676.2-201ENST00000605225 163 ntBASIC0.16□□□□□ -2.38
COL28A1Q2UY09 uc_338.28-201ENST00000612082 187 ntBASIC0.16□□□□□ -2.38
COL28A1Q2UY09 TRDV1-202ENST00000621643 102 ntBASIC0.16□□□□□ -2.38
COL28A1Q2UY09 RNA5SP266-201ENST00000410273 108 ntBASIC0.15□□□□□ -2.39
COL28A1Q2UY09 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.15□□□□□ -2.39
COL28A1Q2UY09 RNU6-1232P-201ENST00000516299 86 ntBASIC0.15□□□□□ -2.39
COL28A1Q2UY09 RNA5SP67-201ENST00000516422 131 ntBASIC0.15□□□□□ -2.39
COL28A1Q2UY09 RNU6-406P-201ENST00000516470 107 ntBASIC0.15□□□□□ -2.39
COL28A1Q2UY09 MIR548AG2-201ENST00000581228 64 ntBASIC0.15□□□□□ -2.39
COL28A1Q2UY09 MTRNR2L2-201ENST00000604882 87 ntBASIC0.15□□□□□ -2.39
COL28A1Q2UY09 RNU6-86P-201ENST00000606534 107 ntBASIC0.15□□□□□ -2.39
COL28A1Q2UY09 SNORA70.25-201ENST00000612741 95 ntBASIC0.15□□□□□ -2.39
COL28A1Q2UY09 MIR6129-201ENST00000616087 109 ntBASIC0.15□□□□□ -2.39
COL28A1Q2UY09 Y_RNA.78-201ENST00000362970 110 ntBASIC0.14□□□□□ -2.39
COL28A1Q2UY09 Y_RNA.95-201ENST00000363079 95 ntBASIC0.14□□□□□ -2.39
COL28A1Q2UY09 SNORD45B-201ENST00000364617 72 ntBASIC0.14□□□□□ -2.39
COL28A1Q2UY09 RNU6-1056P-201ENST00000383996 107 ntBASIC0.14□□□□□ -2.39
COL28A1Q2UY09 RNU2-51P-201ENST00000410708 197 ntBASIC0.14□□□□□ -2.39
COL28A1Q2UY09 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.14□□□□□ -2.39
COL28A1Q2UY09 AL161932.1-201ENST00000437408 146 ntBASIC0.14□□□□□ -2.39
COL28A1Q2UY09 RNU6-789P-201ENST00000517105 102 ntBASIC0.14□□□□□ -2.39
COL28A1Q2UY09 U6.100-201ENST00000636230 99 ntBASIC0.14□□□□□ -2.39
COL28A1Q2UY09 Y_RNA.10-201ENST00000362371 110 ntBASIC0.13□□□□□ -2.39
COL28A1Q2UY09 RNU6-957P-201ENST00000363652 99 ntBASIC0.13□□□□□ -2.39
COL28A1Q2UY09 SNORD95.1-201ENST00000364099 68 ntBASIC0.13□□□□□ -2.39
COL28A1Q2UY09 RNU4-36P-201ENST00000364294 144 ntBASIC0.13□□□□□ -2.39
COL28A1Q2UY09 MIR1295A-201ENST00000408463 79 ntBASIC0.13□□□□□ -2.39
COL28A1Q2UY09 Y_RNA.601-201ENST00000410500 113 ntBASIC0.13□□□□□ -2.39
COL28A1Q2UY09 RNU4-61P-201ENST00000411243 107 ntBASIC0.13□□□□□ -2.39
COL28A1Q2UY09 AL606753.1-201ENST00000427435 87 ntBASIC0.13□□□□□ -2.39
COL28A1Q2UY09 RNU6-589P-201ENST00000516485 107 ntBASIC0.13□□□□□ -2.39
COL28A1Q2UY09 AC025521.1-201ENST00000621624 286 ntBASIC0.13□□□□□ -2.39
COL28A1Q2UY09 MIR371B-201ENST00000638082 66 ntBASIC0.13□□□□□ -2.39
COL28A1Q2UY09 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.12□□□□□ -2.39
COL28A1Q2UY09 MIR617-201ENST00000385030 97 ntBASIC0.12□□□□□ -2.39
COL28A1Q2UY09 MIR519E-201ENST00000385075 84 ntBASIC0.12□□□□□ -2.39
COL28A1Q2UY09 RNU6-127P-201ENST00000390897 107 ntBASIC0.12□□□□□ -2.39
COL28A1Q2UY09 SNORA19.1-201ENST00000410656 129 ntBASIC0.12□□□□□ -2.39
COL28A1Q2UY09 RNA5SP484-201ENST00000458857 111 ntBASIC0.12□□□□□ -2.39
COL28A1Q2UY09 snoU13.11-201ENST00000459219 104 ntBASIC0.12□□□□□ -2.39
COL28A1Q2UY09 Y_RNA.648-201ENST00000459455 110 ntBASIC0.12□□□□□ -2.39
COL28A1Q2UY09 RNU6-904P-201ENST00000516206 101 ntBASIC0.12□□□□□ -2.39
COL28A1Q2UY09 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.12□□□□□ -2.39
COL28A1Q2UY09 Y_RNA.273-201ENST00000364703 102 ntBASIC0.11□□□□□ -2.39
COL28A1Q2UY09 Y_RNA.283-201ENST00000364798 112 ntBASIC0.11□□□□□ -2.39
COL28A1Q2UY09 Y_RNA.467-201ENST00000384297 102 ntBASIC0.11□□□□□ -2.39
COL28A1Q2UY09 RNU6-813P-201ENST00000384691 107 ntBASIC0.11□□□□□ -2.39
COL28A1Q2UY09 RNU6-466P-201ENST00000391224 103 ntBASIC0.11□□□□□ -2.39
COL28A1Q2UY09 Y_RNA.596-201ENST00000410462 109 ntBASIC0.11□□□□□ -2.39
COL28A1Q2UY09 AC093423.1-201ENST00000440817 142 ntBASIC0.11□□□□□ -2.39
COL28A1Q2UY09 MIR2113-201ENST00000459007 91 ntBASIC0.11□□□□□ -2.39
COL28A1Q2UY09 RNU6-287P-201ENST00000516230 98 ntBASIC0.11□□□□□ -2.39
COL28A1Q2UY09 RNU6-537P-201ENST00000517277 103 ntBASIC0.11□□□□□ -2.39
COL28A1Q2UY09 NAMPTP3-201ENST00000569273 224 ntBASIC0.11□□□□□ -2.39
COL28A1Q2UY09 AL513043.2-201ENST00000573941 143 ntBASIC0.11□□□□□ -2.39
COL28A1Q2UY09 MIR4777-201ENST00000583710 86 ntBASIC0.11□□□□□ -2.39
COL28A1Q2UY09 MIR4743-201ENST00000584576 69 ntBASIC0.11□□□□□ -2.39
COL28A1Q2UY09 MIR548Z-201ENST00000584743 97 ntBASIC0.11□□□□□ -2.39
COL28A1Q2UY09 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.11□□□□□ -2.39
COL28A1Q2UY09 RNU1-141P-201ENST00000364623 158 ntBASIC0.1□□□□□ -2.39
COL28A1Q2UY09 RNU6-106P-201ENST00000384405 107 ntBASIC0.1□□□□□ -2.39
COL28A1Q2UY09 MIR501-201ENST00000390204 84 ntBASIC0.1□□□□□ -2.39
COL28A1Q2UY09 AC104692.1-201ENST00000472406 90 ntBASIC0.1□□□□□ -2.39
COL28A1Q2UY09 SCARNA23-201ENST00000516060 130 ntBASIC0.1□□□□□ -2.39
COL28A1Q2UY09 RNU7-129P-201ENST00000516128 62 ntBASIC0.1□□□□□ -2.39
COL28A1Q2UY09 RNU6-795P-201ENST00000516323 103 ntBASIC0.1□□□□□ -2.39
COL28A1Q2UY09 RNU6-782P-201ENST00000516852 104 ntBASIC0.1□□□□□ -2.39
COL28A1Q2UY09 MIR548AD-201ENST00000584780 82 ntBASIC0.1□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 323.5 ms