Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 Y_RNA.32-201ENST00000362589 110 ntBASIC1.55□□□□□ -2.16
SOX4Q06945 RNU6-824P-201ENST00000363724 104 ntBASIC1.55□□□□□ -2.16
SOX4Q06945 MIR154-201ENST00000385243 84 ntBASIC1.55□□□□□ -2.16
SOX4Q06945 RNU6-321P-201ENST00000410912 106 ntBASIC1.55□□□□□ -2.16
SOX4Q06945 AC067940.1-201ENST00000458411 300 ntBASIC1.55□□□□□ -2.16
SOX4Q06945 MIR4781-201ENST00000585250 76 ntBASIC1.55□□□□□ -2.16
SOX4Q06945 Y_RNA.118-201ENST00000363300 101 ntBASIC1.54□□□□□ -2.16
SOX4Q06945 SNORD115-44-201ENST00000365391 82 ntBASIC1.54□□□□□ -2.16
SOX4Q06945 U3.27-201ENST00000391237 200 ntBASIC1.54□□□□□ -2.16
SOX4Q06945 MIR1827-201ENST00000408549 66 ntBASIC1.54□□□□□ -2.16
SOX4Q06945 MIR4421-201ENST00000578133 69 ntBASIC1.54□□□□□ -2.16
SOX4Q06945 U6.81-201ENST00000612550 106 ntBASIC1.54□□□□□ -2.16
SOX4Q06945 SNORD115-24-201ENST00000363528 82 ntBASIC1.53□□□□□ -2.16
SOX4Q06945 Y_RNA.174-201ENST00000363781 105 ntBASIC1.53□□□□□ -2.16
SOX4Q06945 RNU6-649P-201ENST00000384463 107 ntBASIC1.53□□□□□ -2.16
SOX4Q06945 SNORD12-201ENST00000391002 90 ntBASIC1.53□□□□□ -2.16
SOX4Q06945 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.53□□□□□ -2.16
SOX4Q06945 RNU7-13P-201ENST00000516413 62 ntBASIC1.53□□□□□ -2.16
SOX4Q06945 MIR3675-201ENST00000583661 73 ntBASIC1.53□□□□□ -2.16
SOX4Q06945 Y_RNA.164-201ENST00000363709 102 ntBASIC1.52□□□□□ -2.17
SOX4Q06945 SNORA7.1-201ENST00000363750 139 ntBASIC1.52□□□□□ -2.17
SOX4Q06945 RNU6-540P-201ENST00000384622 101 ntBASIC1.52□□□□□ -2.17
SOX4Q06945 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
SOX4Q06945 RNU1-92P-201ENST00000517017 135 ntBASIC1.52□□□□□ -2.17
SOX4Q06945 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.52□□□□□ -2.17
SOX4Q06945 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
SOX4Q06945 RNA5SP403-201ENST00000363598 108 ntBASIC1.51□□□□□ -2.17
SOX4Q06945 SNORD115-31-201ENST00000365318 82 ntBASIC1.51□□□□□ -2.17
SOX4Q06945 RNU6-997P-201ENST00000384725 107 ntBASIC1.51□□□□□ -2.17
SOX4Q06945 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.51□□□□□ -2.17
SOX4Q06945 RNU6-1177P-201ENST00000391058 104 ntBASIC1.51□□□□□ -2.17
SOX4Q06945 SNORD30.1-201ENST00000391309 70 ntBASIC1.51□□□□□ -2.17
SOX4Q06945 AC002429.1-201ENST00000437672 148 ntBASIC1.51□□□□□ -2.17
SOX4Q06945 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
SOX4Q06945 RMST_2.1-201ENST00000617263 136 ntBASIC1.51□□□□□ -2.17
SOX4Q06945 MIR222-201ENST00000384992 110 ntBASIC1.5□□□□□ -2.17
SOX4Q06945 MIR2113-201ENST00000459007 91 ntBASIC1.5□□□□□ -2.17
SOX4Q06945 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.49□□□□□ -2.17
SOX4Q06945 RNU7-161P-201ENST00000517289 62 ntBASIC1.49□□□□□ -2.17
SOX4Q06945 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.49□□□□□ -2.17
SOX4Q06945 Y_RNA.226-201ENST00000364337 114 ntBASIC1.48□□□□□ -2.17
SOX4Q06945 RNU6-1126P-201ENST00000384002 107 ntBASIC1.48□□□□□ -2.17
SOX4Q06945 MIR1287-201ENST00000408492 90 ntBASIC1.48□□□□□ -2.17
SOX4Q06945 AC125388.1-201ENST00000459631 156 ntBASIC1.48□□□□□ -2.17
SOX4Q06945 TRMT112P2-201ENST00000512910 132 ntBASIC1.48□□□□□ -2.17
SOX4Q06945 MIR548AG2-201ENST00000581228 64 ntBASIC1.48□□□□□ -2.17
SOX4Q06945 MIR3920-201ENST00000581751 86 ntBASIC1.48□□□□□ -2.17
SOX4Q06945 MIR4773-1-201ENST00000637203 78 ntBASIC1.48□□□□□ -2.17
SOX4Q06945 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
SOX4Q06945 Y_RNA.340-201ENST00000365330 92 ntBASIC1.47□□□□□ -2.17
SOX4Q06945 RNA5SP61-201ENST00000516453 100 ntBASIC1.47□□□□□ -2.17
SOX4Q06945 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
SOX4Q06945 SNORD45.1-201ENST00000363181 77 ntBASIC1.46□□□□□ -2.18
SOX4Q06945 Y_RNA.258-201ENST00000364613 105 ntBASIC1.46□□□□□ -2.18
SOX4Q06945 RNU6-382P-201ENST00000365181 106 ntBASIC1.46□□□□□ -2.18
SOX4Q06945 SNORA25-201ENST00000384384 134 ntBASIC1.46□□□□□ -2.18
SOX4Q06945 RNU7-104P-201ENST00000459398 79 ntBASIC1.46□□□□□ -2.18
SOX4Q06945 AL136317.1-201ENST00000612653 226 ntBASIC1.46□□□□□ -2.18
SOX4Q06945 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.46□□□□□ -2.18
SOX4Q06945 RNA5SP327-201ENST00000362494 101 ntBASIC1.45□□□□□ -2.18
SOX4Q06945 Y_RNA.327-201ENST00000365201 102 ntBASIC1.45□□□□□ -2.18
SOX4Q06945 RNA5SP117-201ENST00000365294 118 ntBASIC1.45□□□□□ -2.18
SOX4Q06945 RNU6-663P-201ENST00000391105 106 ntBASIC1.45□□□□□ -2.18
SOX4Q06945 RNU1-123P-201ENST00000458950 160 ntBASIC1.45□□□□□ -2.18
SOX4Q06945 RNU6-274P-201ENST00000459566 107 ntBASIC1.45□□□□□ -2.18
SOX4Q06945 AC002350.1-201ENST00000490759 375 ntBASIC1.45□□□□□ -2.18
SOX4Q06945 AL078603.1-201ENST00000603824 313 ntBASIC1.45□□□□□ -2.18
SOX4Q06945 AL353770.2-201ENST00000620024 78 ntBASIC1.45□□□□□ -2.18
SOX4Q06945 U6.111-201ENST00000636093 83 ntBASIC1.45□□□□□ -2.18
SOX4Q06945 Y_RNA.386-201ENST00000383913 105 ntBASIC1.44□□□□□ -2.18
SOX4Q06945 MIR644A-201ENST00000385262 94 ntBASIC1.44□□□□□ -2.18
SOX4Q06945 SNORD89-201ENST00000390981 114 ntBASIC1.44□□□□□ -2.18
SOX4Q06945 MIR337-201ENST00000362281 93 ntBASIC1.43□□□□□ -2.18
SOX4Q06945 RNU6-800P-201ENST00000384473 103 ntBASIC1.43□□□□□ -2.18
SOX4Q06945 MIR617-201ENST00000385030 97 ntBASIC1.43□□□□□ -2.18
SOX4Q06945 MIR216B-201ENST00000390186 82 ntBASIC1.43□□□□□ -2.18
SOX4Q06945 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.43□□□□□ -2.18
SOX4Q06945 RNU6-1110P-201ENST00000516462 101 ntBASIC1.43□□□□□ -2.18
SOX4Q06945 MIR3660-201ENST00000584845 100 ntBASIC1.43□□□□□ -2.18
SOX4Q06945 AC067863.3-201ENST00000624172 122 ntBASIC1.43□□□□□ -2.18
SOX4Q06945 RNU6-392P-201ENST00000364926 101 ntBASIC1.42□□□□□ -2.18
SOX4Q06945 RNU6-895P-201ENST00000384125 103 ntBASIC1.42□□□□□ -2.18
SOX4Q06945 SNORD45A-201ENST00000384512 84 ntBASIC1.42□□□□□ -2.18
SOX4Q06945 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
SOX4Q06945 RPS29P23-201ENST00000458635 123 ntBASIC1.42□□□□□ -2.18
SOX4Q06945 RNU6-752P-201ENST00000516376 102 ntBASIC1.42□□□□□ -2.18
SOX4Q06945 MIR8053-201ENST00000613344 75 ntBASIC1.42□□□□□ -2.18
SOX4Q06945 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.42□□□□□ -2.18
SOX4Q06945 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
SOX4Q06945 MIR7-2-201ENST00000384970 110 ntBASIC1.41□□□□□ -2.18
SOX4Q06945 SNORA40.6-201ENST00000391153 128 ntBASIC1.41□□□□□ -2.18
SOX4Q06945 MIR1265-201ENST00000408444 86 ntBASIC1.41□□□□□ -2.18
SOX4Q06945 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.4□□□□□ -2.19
SOX4Q06945 SNORD115-22-201ENST00000364456 82 ntBASIC1.4□□□□□ -2.19
SOX4Q06945 MIR519E-201ENST00000385075 84 ntBASIC1.4□□□□□ -2.19
SOX4Q06945 SNORD105-201ENST00000386910 85 ntBASIC1.4□□□□□ -2.19
SOX4Q06945 AC244098.3-201ENST00000424803 96 ntBASIC1.4□□□□□ -2.19
SOX4Q06945 RNU6-135P-201ENST00000516769 101 ntBASIC1.4□□□□□ -2.19
SOX4Q06945 AC068338.1-201ENST00000565567 176 ntBASIC1.4□□□□□ -2.19
SOX4Q06945 MIR8070-201ENST00000616510 88 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 196.6 ms