Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 MIR938-201ENST00000401216 83 ntBASIC1.21□□□□□ -2.22
COL4A3Q01955 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.21□□□□□ -2.22
COL4A3Q01955 AC092628.1-201ENST00000436250 252 ntBASIC1.21□□□□□ -2.22
COL4A3Q01955 RNU7-56P-201ENST00000458744 62 ntBASIC1.21□□□□□ -2.22
COL4A3Q01955 RNU6-997P-201ENST00000384725 107 ntBASIC1.2□□□□□ -2.22
COL4A3Q01955 RNU7-40P-201ENST00000516397 64 ntBASIC1.2□□□□□ -2.22
COL4A3Q01955 MIR4804-201ENST00000581683 73 ntBASIC1.2□□□□□ -2.22
COL4A3Q01955 U7.4-201ENST00000614961 63 ntBASIC1.2□□□□□ -2.22
COL4A3Q01955 RNU6-1094P-201ENST00000362416 104 ntBASIC1.2□□□□□ -2.22
COL4A3Q01955 RNU6-315P-201ENST00000362666 107 ntBASIC1.2□□□□□ -2.22
COL4A3Q01955 RNU6-994P-201ENST00000410507 111 ntBASIC1.2□□□□□ -2.22
COL4A3Q01955 RPS29P23-201ENST00000458635 123 ntBASIC1.2□□□□□ -2.22
COL4A3Q01955 MIR4714-201ENST00000580728 77 ntBASIC1.2□□□□□ -2.22
COL4A3Q01955 MIR3064-201ENST00000581130 66 ntBASIC1.2□□□□□ -2.22
COL4A3Q01955 MIR4712-201ENST00000583750 82 ntBASIC1.2□□□□□ -2.22
COL4A3Q01955 RNU6-664P-201ENST00000362381 107 ntBASIC1.19□□□□□ -2.22
COL4A3Q01955 Y_RNA.239-201ENST00000364444 113 ntBASIC1.19□□□□□ -2.22
COL4A3Q01955 MIR1285-1-201ENST00000408593 84 ntBASIC1.19□□□□□ -2.22
COL4A3Q01955 RNU7-102P-201ENST00000458948 62 ntBASIC1.19□□□□□ -2.22
COL4A3Q01955 AC087343.1-201ENST00000477341 475 ntBASIC1.19□□□□□ -2.22
COL4A3Q01955 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.19□□□□□ -2.22
COL4A3Q01955 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
COL4A3Q01955 RNU6-161P-201ENST00000363051 106 ntBASIC1.18□□□□□ -2.22
COL4A3Q01955 RNU6-478P-201ENST00000363904 110 ntBASIC1.18□□□□□ -2.22
COL4A3Q01955 RNU1-119P-201ENST00000391122 165 ntBASIC1.18□□□□□ -2.22
COL4A3Q01955 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.18□□□□□ -2.22
COL4A3Q01955 RNU6-380P-201ENST00000410207 107 ntBASIC1.18□□□□□ -2.22
COL4A3Q01955 AC104996.3-201ENST00000590718 94 ntBASIC1.18□□□□□ -2.22
COL4A3Q01955 RNA5SP245-201ENST00000364239 121 ntBASIC1.17□□□□□ -2.22
COL4A3Q01955 MIR100-201ENST00000385259 80 ntBASIC1.17□□□□□ -2.22
COL4A3Q01955 AL606490.4-201ENST00000423117 127 ntBASIC1.17□□□□□ -2.22
COL4A3Q01955 RNU6-557P-201ENST00000516842 110 ntBASIC1.17□□□□□ -2.22
COL4A3Q01955 MIR599-201ENST00000385069 95 ntBASIC1.16□□□□□ -2.22
COL4A3Q01955 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
COL4A3Q01955 RNU6-369P-201ENST00000362515 102 ntBASIC1.16□□□□□ -2.22
COL4A3Q01955 MIR4696-201ENST00000581431 70 ntBASIC1.16□□□□□ -2.22
COL4A3Q01955 TRDV1-202ENST00000621643 102 ntBASIC1.16□□□□□ -2.22
COL4A3Q01955 RNU6-686P-201ENST00000364839 107 ntBASIC1.15□□□□□ -2.23
COL4A3Q01955 RNY4P3-201ENST00000365254 95 ntBASIC1.15□□□□□ -2.23
COL4A3Q01955 MIR520F-201ENST00000384824 87 ntBASIC1.15□□□□□ -2.23
COL4A3Q01955 Y_RNA.596-201ENST00000410462 109 ntBASIC1.15□□□□□ -2.23
COL4A3Q01955 AC097635.1-201ENST00000450678 155 ntBASIC1.15□□□□□ -2.23
COL4A3Q01955 AC008608.1-201ENST00000603910 127 ntBASIC1.15□□□□□ -2.23
COL4A3Q01955 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.14□□□□□ -2.23
COL4A3Q01955 MIRLET7A1-201ENST00000362295 80 ntBASIC1.14□□□□□ -2.23
COL4A3Q01955 Y_RNA.264-201ENST00000364665 102 ntBASIC1.14□□□□□ -2.23
COL4A3Q01955 SNORD12-201ENST00000391002 90 ntBASIC1.14□□□□□ -2.23
COL4A3Q01955 AC002429.1-201ENST00000437672 148 ntBASIC1.14□□□□□ -2.23
COL4A3Q01955 Y_RNA.660-201ENST00000516002 120 ntBASIC1.14□□□□□ -2.23
COL4A3Q01955 CYP3A137P-201ENST00000562436 69 ntBASIC1.14□□□□□ -2.23
COL4A3Q01955 SNORD101-201ENST00000384027 73 ntBASIC1.13□□□□□ -2.23
COL4A3Q01955 AC067940.1-201ENST00000458411 300 ntBASIC1.13□□□□□ -2.23
COL4A3Q01955 snoU13.17-201ENST00000458802 104 ntBASIC1.13□□□□□ -2.23
COL4A3Q01955 RNU6-1108P-201ENST00000516308 104 ntBASIC1.13□□□□□ -2.23
COL4A3Q01955 AC145423.2-201ENST00000610631 239 ntBASIC1.13□□□□□ -2.23
COL4A3Q01955 FAS-AS1.1-201ENST00000615327 126 ntBASIC1.13□□□□□ -2.23
COL4A3Q01955 RNU6-1051P-201ENST00000365471 102 ntBASIC1.13□□□□□ -2.23
COL4A3Q01955 SNORA25-201ENST00000384384 134 ntBASIC1.13□□□□□ -2.23
COL4A3Q01955 RNU6-291P-201ENST00000384720 107 ntBASIC1.13□□□□□ -2.23
COL4A3Q01955 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.13□□□□□ -2.23
COL4A3Q01955 SNORD77.2-201ENST00000391045 68 ntBASIC1.13□□□□□ -2.23
COL4A3Q01955 MIR889-201ENST00000401280 79 ntBASIC1.13□□□□□ -2.23
COL4A3Q01955 MIR3973-201ENST00000579824 107 ntBASIC1.13□□□□□ -2.23
COL4A3Q01955 YWHAEP2-201ENST00000580066 112 ntBASIC1.12□□□□□ -2.23
COL4A3Q01955 YWHAEP3-201ENST00000582767 121 ntBASIC1.12□□□□□ -2.23
COL4A3Q01955 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.11□□□□□ -2.23
COL4A3Q01955 RNU4-38P-201ENST00000364472 129 ntBASIC1.11□□□□□ -2.23
COL4A3Q01955 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.11□□□□□ -2.23
COL4A3Q01955 RNU6-1052P-201ENST00000411398 104 ntBASIC1.11□□□□□ -2.23
COL4A3Q01955 AC244505.6-201ENST00000452829 130 ntBASIC1.11□□□□□ -2.23
COL4A3Q01955 RNU6-719P-201ENST00000516671 104 ntBASIC1.11□□□□□ -2.23
COL4A3Q01955 MIR2909-201ENST00000617113 69 ntBASIC1.11□□□□□ -2.23
COL4A3Q01955 U6.100-201ENST00000636230 99 ntBASIC1.11□□□□□ -2.23
COL4A3Q01955 MIR1297-201ENST00000637311 77 ntBASIC1.11□□□□□ -2.23
COL4A3Q01955 RNU6-208P-201ENST00000362431 107 ntBASIC1.1□□□□□ -2.23
COL4A3Q01955 Y_RNA.174-201ENST00000363781 105 ntBASIC1.1□□□□□ -2.23
COL4A3Q01955 MIR1827-201ENST00000408549 66 ntBASIC1.1□□□□□ -2.23
COL4A3Q01955 SNORA31.14-201ENST00000516728 116 ntBASIC1.1□□□□□ -2.23
COL4A3Q01955 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.1□□□□□ -2.23
COL4A3Q01955 uc_338.16-201ENST00000621804 95 ntBASIC1.1□□□□□ -2.23
COL4A3Q01955 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
COL4A3Q01955 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
COL4A3Q01955 SNORD89-201ENST00000390981 114 ntBASIC1.1□□□□□ -2.23
COL4A3Q01955 MIR1197-201ENST00000408818 88 ntBASIC1.1□□□□□ -2.23
COL4A3Q01955 FGF7P7-201ENST00000514120 227 ntBASIC1.1□□□□□ -2.23
COL4A3Q01955 MTRNR2L2-201ENST00000604882 87 ntBASIC1.1□□□□□ -2.23
COL4A3Q01955 AC211469.2-201ENST00000605461 205 ntBASIC1.1□□□□□ -2.23
COL4A3Q01955 RNA5SP327-201ENST00000362494 101 ntBASIC1.09□□□□□ -2.24
COL4A3Q01955 Y_RNA.207-201ENST00000364142 106 ntBASIC1.09□□□□□ -2.24
COL4A3Q01955 RNU6-1229P-201ENST00000364295 107 ntBASIC1.09□□□□□ -2.24
COL4A3Q01955 U7.7-201ENST00000459276 60 ntBASIC1.09□□□□□ -2.24
COL4A3Q01955 RNA5SP117-201ENST00000365294 118 ntBASIC1.08□□□□□ -2.24
COL4A3Q01955 SNORD90-201ENST00000391145 111 ntBASIC1.08□□□□□ -2.24
COL4A3Q01955 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.08□□□□□ -2.24
COL4A3Q01955 RNU6-287P-201ENST00000516230 98 ntBASIC1.08□□□□□ -2.24
COL4A3Q01955 SNORD114-21-201ENST00000606412 72 ntBASIC1.08□□□□□ -2.24
COL4A3Q01955 AL136317.1-201ENST00000612653 226 ntBASIC1.08□□□□□ -2.24
COL4A3Q01955 Y_RNA.12-201ENST00000362393 112 ntBASIC1.07□□□□□ -2.24
COL4A3Q01955 Y_RNA.371-201ENST00000365591 113 ntBASIC1.07□□□□□ -2.24
COL4A3Q01955 MIR520H-201ENST00000385126 88 ntBASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 235.4 ms