Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RNU6-466P-201ENST00000391224 103 ntBASIC0.15□□□□□ -2.39
HOXC9P31274 RNU6-1064P-201ENST00000410626 104 ntBASIC0.15□□□□□ -2.39
HOXC9P31274 RNU7-74P-201ENST00000459104 62 ntBASIC0.15□□□□□ -2.39
HOXC9P31274 RNU6-848P-201ENST00000515948 107 ntBASIC0.15□□□□□ -2.39
HOXC9P31274 RNU6-617P-201ENST00000516147 107 ntBASIC0.15□□□□□ -2.39
HOXC9P31274 RNU6-473P-201ENST00000516164 107 ntBASIC0.15□□□□□ -2.39
HOXC9P31274 RNU6-1049P-201ENST00000516414 107 ntBASIC0.15□□□□□ -2.39
HOXC9P31274 RNU4-36P-201ENST00000364294 144 ntBASIC0.14□□□□□ -2.39
HOXC9P31274 SNORD45B-201ENST00000364617 72 ntBASIC0.14□□□□□ -2.39
HOXC9P31274 RNU6-1168P-201ENST00000390831 104 ntBASIC0.14□□□□□ -2.39
HOXC9P31274 SNORD110-201ENST00000408189 75 ntBASIC0.14□□□□□ -2.39
HOXC9P31274 MIR548AG2-201ENST00000581228 64 ntBASIC0.14□□□□□ -2.39
HOXC9P31274 MIR6129-201ENST00000616087 109 ntBASIC0.14□□□□□ -2.39
HOXC9P31274 AC025521.1-201ENST00000621624 286 ntBASIC0.14□□□□□ -2.39
HOXC9P31274 RNA5SP205-201ENST00000364653 136 ntBASIC0.13□□□□□ -2.39
HOXC9P31274 SNORD115-44-201ENST00000365391 82 ntBASIC0.13□□□□□ -2.39
HOXC9P31274 snoU13.11-201ENST00000459219 104 ntBASIC0.13□□□□□ -2.39
HOXC9P31274 RNU6-313P-201ENST00000516317 112 ntBASIC0.13□□□□□ -2.39
HOXC9P31274 MIR501-201ENST00000390204 84 ntBASIC0.12□□□□□ -2.39
HOXC9P31274 SNORA19.1-201ENST00000410656 129 ntBASIC0.12□□□□□ -2.39
HOXC9P31274 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.12□□□□□ -2.39
HOXC9P31274 MIR2113-201ENST00000459007 91 ntBASIC0.12□□□□□ -2.39
HOXC9P31274 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.12□□□□□ -2.39
HOXC9P31274 MIR5706-201ENST00000579841 80 ntBASIC0.12□□□□□ -2.39
HOXC9P31274 AC104408.1-201ENST00000605241 170 ntBASIC0.12□□□□□ -2.39
HOXC9P31274 U7.6-201ENST00000610841 64 ntBASIC0.12□□□□□ -2.39
HOXC9P31274 Y_RNA.10-201ENST00000362371 110 ntBASIC0.11□□□□□ -2.39
HOXC9P31274 Y_RNA.95-201ENST00000363079 95 ntBASIC0.11□□□□□ -2.39
HOXC9P31274 SNORA51.5-201ENST00000384126 131 ntBASIC0.11□□□□□ -2.39
HOXC9P31274 Y_RNA.596-201ENST00000410462 109 ntBASIC0.11□□□□□ -2.39
HOXC9P31274 RNU6-287P-201ENST00000516230 98 ntBASIC0.11□□□□□ -2.39
HOXC9P31274 RNU6-795P-201ENST00000516323 103 ntBASIC0.11□□□□□ -2.39
HOXC9P31274 uc_338.28-201ENST00000612082 187 ntBASIC0.11□□□□□ -2.39
HOXC9P31274 RNU6-1056P-201ENST00000383996 107 ntBASIC0.1□□□□□ -2.39
HOXC9P31274 Y_RNA.467-201ENST00000384297 102 ntBASIC0.1□□□□□ -2.39
HOXC9P31274 MIR617-201ENST00000385030 97 ntBASIC0.1□□□□□ -2.39
HOXC9P31274 MIR519E-201ENST00000385075 84 ntBASIC0.1□□□□□ -2.39
HOXC9P31274 RNU6-479P-201ENST00000516348 105 ntBASIC0.1□□□□□ -2.39
HOXC9P31274 RNA5SP214-201ENST00000363378 118 ntBASIC0.09□□□□□ -2.4
HOXC9P31274 RNU1-141P-201ENST00000364623 158 ntBASIC0.09□□□□□ -2.4
HOXC9P31274 Y_RNA.283-201ENST00000364798 112 ntBASIC0.09□□□□□ -2.4
HOXC9P31274 MIR548Z-201ENST00000584743 97 ntBASIC0.09□□□□□ -2.4
HOXC9P31274 AC103810.7-201ENST00000607821 91 ntBASIC0.09□□□□□ -2.4
HOXC9P31274 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.09□□□□□ -2.4
HOXC9P31274 SNORD114-5-201ENST00000362928 70 ntBASIC0.08□□□□□ -2.4
HOXC9P31274 SNORA42.1-201ENST00000363515 137 ntBASIC0.08□□□□□ -2.4
HOXC9P31274 MIR610-201ENST00000385139 96 ntBASIC0.08□□□□□ -2.4
HOXC9P31274 Y_RNA.601-201ENST00000410500 113 ntBASIC0.08□□□□□ -2.4
HOXC9P31274 RNU2-51P-201ENST00000410708 197 ntBASIC0.08□□□□□ -2.4
HOXC9P31274 AL513043.2-201ENST00000573941 143 ntBASIC0.08□□□□□ -2.4
HOXC9P31274 MIR4439-201ENST00000583746 80 ntBASIC0.08□□□□□ -2.4
HOXC9P31274 AC012531.4-201ENST00000616509 177 ntBASIC0.08□□□□□ -2.4
HOXC9P31274 Y_RNA.207-201ENST00000364142 106 ntBASIC0.07□□□□□ -2.4
HOXC9P31274 SNORD101-201ENST00000384027 73 ntBASIC0.07□□□□□ -2.4
HOXC9P31274 MIR1302-5-201ENST00000408164 150 ntBASIC0.07□□□□□ -2.4
HOXC9P31274 AL606753.1-201ENST00000427435 87 ntBASIC0.07□□□□□ -2.4
HOXC9P31274 Y_RNA.648-201ENST00000459455 110 ntBASIC0.07□□□□□ -2.4
HOXC9P31274 MIR4473-201ENST00000583731 91 ntBASIC0.07□□□□□ -2.4
HOXC9P31274 SNORD114-9-201ENST00000364370 72 ntBASIC0.06□□□□□ -2.4
HOXC9P31274 RNU6-813P-201ENST00000384691 107 ntBASIC0.06□□□□□ -2.4
HOXC9P31274 MIR593-201ENST00000384856 100 ntBASIC0.06□□□□□ -2.4
HOXC9P31274 RNU4-61P-201ENST00000411243 107 ntBASIC0.06□□□□□ -2.4
HOXC9P31274 HMGN2P22-201ENST00000427588 175 ntBASIC0.06□□□□□ -2.4
HOXC9P31274 RNU6-1057P-201ENST00000517162 102 ntBASIC0.06□□□□□ -2.4
HOXC9P31274 MIR4460-201ENST00000577862 86 ntBASIC0.06□□□□□ -2.4
HOXC9P31274 MIR4667-201ENST00000578933 66 ntBASIC0.06□□□□□ -2.4
HOXC9P31274 MIR4677-201ENST00000584153 80 ntBASIC0.06□□□□□ -2.4
HOXC9P31274 MIR548AD-201ENST00000584780 82 ntBASIC0.06□□□□□ -2.4
HOXC9P31274 RNU6-652P-201ENST00000365488 107 ntBASIC0.05□□□□□ -2.4
HOXC9P31274 SNORA19-201ENST00000384737 128 ntBASIC0.05□□□□□ -2.4
HOXC9P31274 SCARNA23-201ENST00000516060 130 ntBASIC0.05□□□□□ -2.4
HOXC9P31274 RNU6-904P-201ENST00000516206 101 ntBASIC0.05□□□□□ -2.4
HOXC9P31274 RNU6-65P-201ENST00000516332 98 ntBASIC0.05□□□□□ -2.4
HOXC9P31274 MIR4777-201ENST00000583710 86 ntBASIC0.05□□□□□ -2.4
HOXC9P31274 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.05□□□□□ -2.4
HOXC9P31274 RNU6-834P-201ENST00000362367 110 ntBASIC0.04□□□□□ -2.4
HOXC9P31274 RNU6-664P-201ENST00000362381 107 ntBASIC0.04□□□□□ -2.4
HOXC9P31274 Y_RNA.433-201ENST00000384089 102 ntBASIC0.04□□□□□ -2.4
HOXC9P31274 RNU6-782P-201ENST00000516852 104 ntBASIC0.04□□□□□ -2.4
HOXC9P31274 YWHAEP2-201ENST00000580066 112 ntBASIC0.04□□□□□ -2.4
HOXC9P31274 MIR4696-201ENST00000581431 70 ntBASIC0.04□□□□□ -2.4
HOXC9P31274 Y_RNA.125-201ENST00000363371 111 ntBASIC0.03□□□□□ -2.4
HOXC9P31274 MIR548H2-201ENST00000408874 88 ntBASIC0.03□□□□□ -2.4
HOXC9P31274 RNU6-554P-201ENST00000410466 106 ntBASIC0.03□□□□□ -2.4
HOXC9P31274 MIR4536-1-201ENST00000583537 88 ntBASIC0.03□□□□□ -2.4
HOXC9P31274 MTRNR2L2-201ENST00000604882 87 ntBASIC0.03□□□□□ -2.4
HOXC9P31274 SNORD113-1-201ENST00000365321 69 ntBASIC0.02□□□□□ -2.41
HOXC9P31274 MIR590-201ENST00000385008 97 ntBASIC0.02□□□□□ -2.41
HOXC9P31274 AC093423.1-201ENST00000440817 142 ntBASIC0.02□□□□□ -2.41
HOXC9P31274 RNU6-589P-201ENST00000516485 107 ntBASIC0.02□□□□□ -2.41
HOXC9P31274 RNU6-106P-201ENST00000384405 107 ntBASIC0.01□□□□□ -2.41
HOXC9P31274 MIR145-201ENST00000384967 88 ntBASIC0.01□□□□□ -2.41
HOXC9P31274 MIR516B1-201ENST00000385211 90 ntBASIC0.01□□□□□ -2.41
HOXC9P31274 RNU6-644P-201ENST00000391155 98 ntBASIC0.01□□□□□ -2.41
HOXC9P31274 RNU6-75P-201ENST00000515944 104 ntBASIC0.01□□□□□ -2.41
HOXC9P31274 Y_RNA.660-201ENST00000516002 120 ntBASIC0.01□□□□□ -2.41
HOXC9P31274 SNORA25.13-201ENST00000516395 103 ntBASIC0.01□□□□□ -2.41
HOXC9P31274 RNA5SP285-201ENST00000516619 119 ntBASIC0.01□□□□□ -2.41
HOXC9P31274 RNU5B-6P-201ENST00000516765 68 ntBASIC0.01□□□□□ -2.41
HOXC9P31274 RNU6-789P-201ENST00000517105 102 ntBASIC0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 224.1 ms